-
1
-
-
39149142575
-
CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea
-
Sorek, R., Kunin, V. and Hugenholtz, P. (2008) CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat. Rev. Microbiol., 6, 181-186.
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 181-186
-
-
Sorek, R.1
Kunin, V.2
Hugenholtz, P.3
-
2
-
-
68249102788
-
CRISPR-based adaptive and heritable immunity in prokaryotes
-
van der Oost, J., Jore, M.M., Westra, E.R., Lundgren, M. and Brouns, S.J. (2009) CRISPR-based adaptive and heritable immunity in prokaryotes. Trends Biochem. Sci., 34, 401-407.
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 401-407
-
-
Van Der Oost, J.1
Jore, M.M.2
Westra, E.R.3
Lundgren, M.4
Brouns, S.J.5
-
3
-
-
77249170201
-
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
-
Marraffini, L.A. and Sontheimer, E.J. (2010) CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nat. Rev. Genet., 11, 181-190.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 181-190
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
4
-
-
23844505202
-
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
-
Bolotin, A., Quinquis, B., Sorokin, A. and Ehrlich, S.D. (2005) Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology, 151, 2551-2561.
-
(2005)
Microbiology
, vol.151
, pp. 2551-2561
-
-
Bolotin, A.1
Quinquis, B.2
Sorokin, A.3
Ehrlich, S.D.4
-
5
-
-
15844390228
-
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
-
Pourcel, C., Salvignol, G. and Vergnaud, G. (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology, 151, 653-663.
-
(2005)
Microbiology
, vol.151
, pp. 653-663
-
-
Pourcel, C.1
Salvignol, G.2
Vergnaud, G.3
-
6
-
-
16444385662
-
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
-
Mojica, F.J., Diez-Villasenor, C., Garcia-Martinez, J. and Soria, E. (2005) Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol., 60, 174-182.
-
(2005)
J. Mol. Evol.
, vol.60
, pp. 174-182
-
-
Mojica, F.J.1
Diez-Villasenor, C.2
Garcia-Martinez, J.3
Soria, E.4
-
7
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns, S.J., Jore, M.M., Lundgren, M., Westra, E.R., Slijkhuis, R.J., Snijders, A.P., Dickman, M.J., Makarova, K.S., Koonin, E.V. and van der Oost, J. (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science, 321, 960-964.
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
Dickman, M.J.7
Makarova, K.S.8
Koonin, E.V.9
Van Der Oost, J.10
-
8
-
-
70449753811
-
RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex
-
Hale, C.R., Zhao, P., Olson, S., Duff, M.O., Graveley, B.R., Wells, L., Terns, R.M. and Terns, M.P. (2009) RNA-guided RNA cleavage by a CRISPR RNA-Cas protein complex. Cell, 139, 945-956.
-
(2009)
Cell
, vol.139
, pp. 945-956
-
-
Hale, C.R.1
Zhao, P.2
Olson, S.3
Duff, M.O.4
Graveley, B.R.5
Wells, L.6
Terns, R.M.7
Terns, M.P.8
-
9
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
Makarova, K.S., Haft, D.H., Barrangou, R., Brouns, S.J., Charpentier, E., Horvath, P., Moineau, S., Mojica, F.J., Wolf, Y.I., Yakunin, A.F. et al. (2011) Evolution and classification of the CRISPR-Cas systems. Nat. Rev. Microbiol., 9, 467-477.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
Horvath, P.6
Moineau, S.7
Mojica, F.J.8
Wolf, Y.I.9
Yakunin, A.F.10
-
10
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D.A. and Horvath, P. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science, 315, 1709-1712.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
11
-
-
84870718176
-
Memory of viral infections by CRISPR-Cas adaptive immune systems: Acquisition of new information
-
Fineran, P.C. and Charpentier, E. (2012) Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information. Virology, 434, 202-209.
-
(2012)
Virology
, vol.434
, pp. 202-209
-
-
Fineran, P.C.1
Charpentier, E.2
-
12
-
-
84861639567
-
Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
-
Yosef, I., Goren, M.G. and Qimron, U. (2012) Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res., 40, 5569-5576.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5569-5576
-
-
Yosef, I.1
Goren, M.G.2
Qimron, U.3
-
13
-
-
84864864464
-
Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
-
Datsenko, K.A., Pougach, K., Tikhonov, A., Wanner, B.L., Severinov, K. and Semenova, E. (2012) Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat. Commun., 3, 945.
-
(2012)
Nat. Commun.
, vol.3
, pp. 945
-
-
Datsenko, K.A.1
Pougach, K.2
Tikhonov, A.3
Wanner, B.L.4
Severinov, K.5
Semenova, E.6
-
14
-
-
84860433123
-
CRISPR interference directs strand specific spacer acquisition
-
Swarts, D.C., Mosterd, C., van Passel, M.W. and Brouns, S.J. (2012) CRISPR interference directs strand specific spacer acquisition. PLoS One, 7, e35888.
-
(2012)
PLoS One
, vol.7
-
-
Swarts, D.C.1
Mosterd, C.2
Van Passel, M.W.3
Brouns, S.J.4
-
15
-
-
84866023604
-
Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms
-
Erdmann, S. and Garrett, R.A. (2012) Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms. Mol. Microbiol., 85, 1044-1056.
-
(2012)
Mol. Microbiol.
, vol.85
, pp. 1044-1056
-
-
Erdmann, S.1
Garrett, R.A.2
-
16
-
-
84868143545
-
The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages
-
Cady, K.C., Bondy-Denomy, J., Heussler, G.E., Davidson, A.R. and O'Toole, G.A. (2012) The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages. J. Bacteriol., 194, 5728-5738.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 5728-5738
-
-
Cady, K.C.1
Bondy-Denomy, J.2
Heussler, G.E.3
Davidson, A.R.4
O'Toole, G.A.5
-
17
-
-
84873528026
-
Characterization of CRISPR RNA biogenesis and Cas6 cleavage-mediated inhibition of a provirus in the haloarchaeon Haloferax mediterranei
-
Li, M., Liu, H., Han, J., Liu, J., Wang, R., Zhao, D., Zhou, J. and Xiang, H. (2013) Characterization of CRISPR RNA biogenesis and Cas6 cleavage-mediated inhibition of a provirus in the haloarchaeon Haloferax mediterranei. J. Bacteriol., 195, 867-875.
-
(2013)
J. Bacteriol.
, vol.195
, pp. 867-875
-
-
Li, M.1
Liu, H.2
Han, J.3
Liu, J.4
Wang, R.5
Zhao, D.6
Zhou, J.7
Xiang, H.8
-
18
-
-
84866951828
-
An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA
-
Fischer, S., Maier, L.K., Stoll, B., Brendel, J., Fischer, E., Pfeiffer, F., Dyall-Smith, M. and Marchfelder, A. (2012) An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA. J. Biol. Chem., 287, 33351-33363.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 33351-33363
-
-
Fischer, S.1
Maier, L.K.2
Stoll, B.3
Brendel, J.4
Fischer, E.5
Pfeiffer, F.6
Dyall-Smith, M.7
Marchfelder, A.8
-
19
-
-
38049107794
-
Sequence analysis of an Archaeal virus isolated from a hypersaline lake in Inner Mongolia, China
-
Pagaling, E., Haigh, R.D., Grant, W.D., Cowan, D.A., Jones, B.E., Ma, Y., Ventosa, A. and Heaphy, S. (2007) Sequence analysis of an Archaeal virus isolated from a hypersaline lake in Inner Mongolia, China. BMC Genomics, 8, 410.
-
(2007)
BMC Genomics
, vol.8
, pp. 410
-
-
Pagaling, E.1
Haigh, R.D.2
Grant, W.D.3
Cowan, D.A.4
Jones, B.E.5
Ma, Y.6
Ventosa, A.7
Heaphy, S.8
-
20
-
-
64149084027
-
An ssDNA virus infecting archaea: A new lineage of viruses with a membrane envelope
-
Pietila, M.K., Roine, E., Paulin, L., Kalkkinen, N. and Bamford, D.H. (2009) An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Mol. Microbiol., 72, 307-319.
-
(2009)
Mol. Microbiol.
, vol.72
, pp. 307-319
-
-
Pietila, M.K.1
Roine, E.2
Paulin, L.3
Kalkkinen, N.4
Bamford, D.H.5
-
21
-
-
79959374305
-
Development of pyrF-based gene knockout systems for genome-wide manipulation of the archaea Haloferax mediterranei and Haloarcula hispanica
-
Liu, H., Han, J., Liu, X., Zhou, J. and Xiang, H. (2011) Development of pyrF-based gene knockout systems for genome-wide manipulation of the archaea Haloferax mediterranei and Haloarcula hispanica. J. Genet. Genomics, 38, 261-269.
-
(2011)
J. Genet. Genomics
, vol.38
, pp. 261-269
-
-
Liu, H.1
Han, J.2
Liu, X.3
Zhou, J.4
Xiang, H.5
-
22
-
-
84863229520
-
Identification of the haloarchaeal phasin (PhaP) that functions in polyhydroxyalkanoate accumulation and granule formation in Haloferax mediterranei
-
Cai, S., Cai, L., Liu, H., Liu, X., Han, J., Zhou, J. and Xiang, H. (2012) Identification of the haloarchaeal phasin (PhaP) that functions in polyhydroxyalkanoate accumulation and granule formation in Haloferax mediterranei. Appl. Environ. Microbiol., 78, 1946-1952.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 1946-1952
-
-
Cai, S.1
Cai, L.2
Liu, H.3
Liu, X.4
Han, J.5
Zhou, J.6
Xiang, H.7
-
23
-
-
77949366453
-
New, closely related haloarchaeal viral elements with different nucleic Acid types
-
Roine, E., Kukkaro, P., Paulin, L., Laurinavicius, S., Domanska, A., Somerharju, P. and Bamford, D.H. (2010) New, closely related haloarchaeal viral elements with different nucleic Acid types. J. Virol., 84, 3682-3689.
-
(2010)
J. Virol.
, vol.84
, pp. 3682-3689
-
-
Roine, E.1
Kukkaro, P.2
Paulin, L.3
Laurinavicius, S.4
Domanska, A.5
Somerharju, P.6
Bamford, D.H.7
-
24
-
-
79953779608
-
Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
-
Sinkunas, T., Gasiunas, G., Fremaux, C., Barrangou, R., Horvath, P. and Siksnys, V. (2011) Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system. EMBO J., 30, 1335-1342.
-
(2011)
EMBO J.
, vol.30
, pp. 1335-1342
-
-
Sinkunas, T.1
Gasiunas, G.2
Fremaux, C.3
Barrangou, R.4
Horvath, P.5
Siksnys, V.6
-
25
-
-
79955574254
-
Structural basis for CRISPR RNA-guided DNA recognition by Cascade
-
Jore, M.M., Lundgren, M., van Duijn, E., Bultema, J.B., Westra, E.R., Waghmare, S.P., Wiedenheft, B., Pul, U., Wurm, R., Wagner, R. et al. (2011) Structural basis for CRISPR RNA-guided DNA recognition by Cascade. Nat. Struct. Mol. Biol., 18, 529-536.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 529-536
-
-
Jore, M.M.1
Lundgren, M.2
Van Duijn, E.3
Bultema, J.B.4
Westra, E.R.5
Waghmare, S.P.6
Wiedenheft, B.7
Pul, U.8
Wurm, R.9
Wagner, R.10
-
26
-
-
44449133775
-
Virus population dynamics and acquired virus resistance in natural microbial communities
-
Andersson, A.F. and Banfield, J.F. (2008) Virus population dynamics and acquired virus resistance in natural microbial communities. Science, 320, 1047-1050.
-
(2008)
Science
, vol.320
, pp. 1047-1050
-
-
Andersson, A.F.1
Banfield, J.F.2
-
27
-
-
84865795822
-
Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses
-
Pride, D.T., Salzman, J. and Relman, D.A. (2012) Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses. Environ. Microbiol., 14, 2564-2576.
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 2564-2576
-
-
Pride, D.T.1
Salzman, J.2
Relman, D.A.3
-
28
-
-
38149061877
-
Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses
-
Tyson, G.W. and Banfield, J.F. (2008) Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. Environ. Microbiol., 10, 200-207.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 200-207
-
-
Tyson, G.W.1
Banfield, J.F.2
-
29
-
-
0003146009
-
Haloarcula hispanica spec nov and Haloferax gibbonsii spec, nov, two new species of extremely Halophilic archaebacteria
-
Juez, G., Rodriguez-Valera, F., Ventosa, A. and Kushner, D.J. (1986) Haloarcula hispanica spec. nov. and Haloferax gibbonsii spec, nov., two new species of extremely Halophilic archaebacteria. Syst. Appl. Microbiol., 8, 75-79.
-
(1986)
Syst. Appl. Microbiol.
, vol.8
, pp. 75-79
-
-
Juez, G.1
Rodriguez-Valera, F.2
Ventosa, A.3
Kushner, D.J.4
-
30
-
-
77949398275
-
Identification and characterization of E. Coli CRISPR-cas promoters and their silencing by H-NS
-
Pul, U., Wurm, R., Arslan, Z., Geissen, R., Hofmann, N. and Wagner, R. (2010) Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol. Microbiol., 75, 1495-1512.
-
(2010)
Mol. Microbiol.
, vol.75
, pp. 1495-1512
-
-
Pul, U.1
Wurm, R.2
Arslan, Z.3
Geissen, R.4
Hofmann, N.5
Wagner, R.6
-
31
-
-
77956621546
-
H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO
-
Westra, E.R., Pul, U., Heidrich, N., Jore, M.M., Lundgren, M., Stratmann, T., Wurm, R., Raine, A., Mescher, M., Van Heereveld, L. et al. (2010) H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol. Microbiol., 77, 1380-1393.
-
(2010)
Mol. Microbiol.
, vol.77
, pp. 1380-1393
-
-
Westra, E.R.1
Pul, U.2
Heidrich, N.3
Jore, M.M.4
Lundgren, M.5
Stratmann, T.6
Wurm, R.7
Raine, A.8
Mescher, M.9
Van Heereveld, L.10
-
32
-
-
84881256166
-
Vitro reconstitution of an Escherichia coli RNA-guided immune system reveals unidirectional, ATP-dependent degradation of DNA target
-
Mulepati, S. and Bailey, S. (2013) In vitro reconstitution of an Escherichia coli RNA-guided immune system reveals unidirectional, ATP-dependent degradation of DNA target. J. Biol. Chem., 288, 22184-22192.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 22184-22192
-
-
Mulepati, S.1
Bailey, S.2
|