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Volumn 29, Issue 4, 2015, Pages 356-361

Cas9 function and host genome sampling in type II-A CRISPR–cas adaptation

Author keywords

Adaptation; Cas9; CRISPR; PAM; Streptococcus thermophilus

Indexed keywords

CAS1 PROTEIN; CAS2 PROTEIN; CAS9 PROTEIN; CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN; CRISPR ASSOCIATED PROTEIN; CSN2 PROTEIN; NUCLEASE; UNCLASSIFIED DRUG;

EID: 84922998282     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.257550.114     Document Type: Article
Times cited : (188)

References (36)
  • 1
    • 84908508061 scopus 로고    scopus 로고
    • Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease
    • Anders C, Niewoehner O, Duerst A, Jinek M. 2014. Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease. Nature 513: 569–573.
    • (2014) Nature , vol.513 , pp. 569-573
    • Anders, C.1    Niewoehner, O.2    Duerst, A.3    Jinek, M.4
  • 2
    • 84899134190 scopus 로고    scopus 로고
    • CRISPR–Cas systems: Prokaryotes upgrade to adaptive immunity
    • Barrangou R, Marraffini LA. 2014. CRISPR–Cas systems: prokaryotes upgrade to adaptive immunity. Mol Cell 54: 234–244.
    • (2014) Mol Cell , vol.54 , pp. 234-244
    • Barrangou, R.1    Marraffini, L.A.2
  • 6
    • 84864864464 scopus 로고    scopus 로고
    • Molecular memory of prior infections activates the CRISPR/ Cas adaptive bacterial immunity system
    • Datsenko KA, Pougach K, Tikhonov A, Wanner BL, Severinov K, Semenova E. 2012. Molecular memory of prior infections activates the CRISPR/ Cas adaptive bacterial immunity system. Nat Commun 3: 945.
    • (2012) Nat Commun , vol.3 , pp. 945
    • Datsenko, K.A.1    Pougach, K.2    Tikhonov, A.3    Wanner, B.L.4    Severinov, K.5    Semenova, E.6
  • 9
    • 84879032247 scopus 로고    scopus 로고
    • CRISPR-spacer integration reporter plasmids reveal distinct genuine acquisition specificities among CRISPR–Cas I-E variants of Escherichia coli
    • Diez-Villasenor C, Guzman NM, Almendros C, Garcia-Martinez J, Mojica FJ. 2013. CRISPR-spacer integration reporter plasmids reveal distinct genuine acquisition specificities among CRISPR–Cas I-E variants of Escherichia coli. RNA Biol 10: 792–802.
    • (2013) RNA Biol , vol.10 , pp. 792-802
    • Diez-Villasenor, C.1    Guzman, N.M.2    Almendros, C.3    Garcia-Martinez, J.4    Mojica, F.J.5
  • 11
    • 84866023604 scopus 로고    scopus 로고
    • Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms
    • Erdmann S, Garrett RA. 2012. Selective and hyperactive uptake of foreign DNA by adaptive immune systems of an archaeon via two distinct mechanisms. Mol Microbiol 85: 1044–1056.
    • (2012) Mol Microbiol , vol.85 , pp. 1044-1056
    • Erdmann, S.1    Garrett, R.A.2
  • 13
    • 84866859751 scopus 로고    scopus 로고
    • Cas9–crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
    • Gasiunas G, Barrangou R, Horvath P, Siksnys V. 2012. Cas9–crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci 109: E2579– E2586.
    • (2012) Proc Natl Acad Sci , vol.109
    • Gasiunas, G.1    Barrangou, R.2    Horvath, P.3    Siksnys, V.4
  • 14
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • Haft DH, Selengut J, Mongodin EF, Nelson KE. 2005. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 1: e60.
    • (2005) Plos Comput Biol , vol.1
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 15
    • 84903471734 scopus 로고    scopus 로고
    • Adapting to new threats: The generation of memory by CRISPR–Cas immune systems
    • Heler R, Marraffini LA, Bikard D. 2014. Adapting to new threats: the generation of memory by CRISPR–Cas immune systems. Mol Microbiol 93: 1–9.
    • (2014) Mol Microbiol , vol.93 , pp. 1-9
    • Heler, R.1    Marraffini, L.A.2    Bikard, D.3
  • 16
    • 84874608929 scopus 로고    scopus 로고
    • RNA-guided editing of bacterial genomes using CRISPR–Cas systems
    • Jiang W, Bikard D, Cox D, Zhang F, Marraffini LA. 2013. RNA-guided editing of bacterial genomes using CRISPR–Cas systems. Nat Biotechnol 31: 233–239.
    • (2013) Nat Biotechnol , vol.31 , pp. 233-239
    • Jiang, W.1    Bikard, D.2    Cox, D.3    Zhang, F.4    Marraffini, L.A.5
  • 17
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E. 2012. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337: 816–821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 18
    • 0021217886 scopus 로고
    • Construction of plasmid cloning vectors for lactic streptococci which also replicate in Bacillus subtilis and Escherichia coli
    • Kok J, van der Vossen JM, Venema G. 1984. Construction of plasmid cloning vectors for lactic streptococci which also replicate in Bacillus subtilis and Escherichia coli. Appl Environ Microbiol 48: 726–731.
    • (1984) Appl Environ Microbiol , vol.48 , pp. 726-731
    • Kok, J.1    Van Der Vossen, J.M.2    Venema, G.3
  • 19
    • 84903175627 scopus 로고    scopus 로고
    • Haloarcula hispanica CRISPR authenticates PAM of a target sequence to prime discriminative adaptation
    • Li M, Wang R, Xiang H. 2014. Haloarcula hispanica CRISPR authenticates PAM of a target sequence to prime discriminative adaptation. Nucleic Acids Res 42: 7226–7235.
    • (2014) Nucleic Acids Res , vol.42 , pp. 7226-7235
    • Li, M.1    Wang, R.2    Xiang, H.3
  • 22
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica FJ, Diez-Villasenor C, Garcia-Martinez J, Almendros C. 2009. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155: 733–740.
    • (2009) Microbiology , vol.155 , pp. 733-740
    • Mojica, F.J.1    Diez-Villasenor, C.2    Garcia-Martinez, J.3    Almendros, C.4
  • 23
    • 80052213049 scopus 로고    scopus 로고
    • Crystal structure of clustered regularly interspaced short palindromic repeats (CRISPR)-associated Csn2 protein revealed Ca2+-dependent double-stranded DNA binding activity
    • Nam KH, Kurinov I, Ke A. 2011. Crystal structure of clustered regularly interspaced short palindromic repeats (CRISPR)-associated Csn2 protein revealed Ca2+-dependent double-stranded DNA binding activity. J Biol Chem 286: 30759–30768.
    • (2011) J Biol Chem , vol.286 , pp. 30759-30768
    • Nam, K.H.1    Kurinov, I.2    Ke, A.3
  • 27
    • 65049084012 scopus 로고    scopus 로고
    • Insertion of a heterologous gene construct into a non-functional ORF of the Streptococcus thermophilus chromosome
    • Renye JA Jr, Somkuti GA. 2009. Insertion of a heterologous gene construct into a non-functional ORF of the Streptococcus thermophilus chromosome. Biotechnol Lett 31: 759–764.
    • (2009) Biotechnol Lett , vol.31 , pp. 759-764
    • Renye, J.A.1    Somkuti, G.A.2
  • 28
    • 84879026965 scopus 로고    scopus 로고
    • Protospacer recognition motifs: Mixed identities and functional diversity
    • Shah SA, Erdmann S, Mojica FJ, Garrett RA. 2013. Protospacer recognition motifs: mixed identities and functional diversity. RNA Biol 10: 891–899.
    • (2013) RNA Biol , vol.10 , pp. 891-899
    • Shah, S.A.1    Erdmann, S.2    Mojica, F.J.3    Garrett, R.A.4
  • 29
    • 77955085897 scopus 로고    scopus 로고
    • Self-targeting by CRISPR: Gene regulation or autoimmunity?
    • Stern A, Keren L, Wurtzel O, Amitai G, Sorek R. 2010. Self-targeting by CRISPR: gene regulation or autoimmunity? Trends Genet 26: 335–340.
    • (2010) Trends Genet , vol.26 , pp. 335-340
    • Stern, A.1    Keren, L.2    Wurtzel, O.3    Amitai, G.4    Sorek, R.5
  • 32
    • 79959319829 scopus 로고    scopus 로고
    • CRISPR-based adaptive immune systems
    • Terns MP, Terns RM. 2011. CRISPR-based adaptive immune systems. Curr Opin Microbiol 14: 321–327.
    • (2011) Curr Opin Microbiol , vol.14 , pp. 321-327
    • Terns, M.P.1    Terns, R.M.2
  • 33
    • 84896731736 scopus 로고    scopus 로고
    • CRISPR-based technologies: Prokaryotic defense weapons repurposed
    • Terns RM, Terns MP. 2014. CRISPR-based technologies: prokaryotic defense weapons repurposed. Trends Gen 30: 111–118.
    • (2014) Trends Gen , vol.30 , pp. 111-118
    • Terns, R.M.1    Terns, M.P.2
  • 35
    • 84922978235 scopus 로고    scopus 로고
    • Sequences spanning the leader-repeat junction mediate CRISPR adaptation to phage in Streptococcus thermophilus
    • Wei Y, Chesne MT, Terns RM, Terns MP. 2015. Sequences spanning the leader-repeat junction mediate CRISPR adaptation to phage in Streptococcus thermophilus. Nucleic Acids Res doi: 10.1093/nar/gku1407.
    • (2015) Nucleic Acids Res
    • Wei, Y.1    Chesne, M.T.2    Terns, R.M.3    Terns, M.P.4
  • 36
    • 84861639567 scopus 로고    scopus 로고
    • Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
    • Yosef I, Goren MG, Qimron U. 2012. Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res 40: 5569–5576.
    • (2012) Nucleic Acids Res , vol.40 , pp. 5569-5576
    • Yosef, I.1    Goren, M.G.2    Qimron, U.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.