-
1
-
-
34248374277
-
A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
-
Makarova, K. S., Grishin, N. V., Shabalina, S. A., Wolf, Y. I. and Koonin, E. V. (2006) A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol. Direct., 1, 7.
-
(2006)
Biol. Direct.
, vol.1
, pp. 7
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
2
-
-
80755187812
-
CRISPR-Cas systems in bacteria and archaea: Versatile small RNAs for adaptive defense and regulation
-
Bhaya, D., Davison, M. and Barrangou, R. (2011) CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu. Rev. Genet., 45, 273-297.
-
(2011)
Annu. Rev. Genet.
, vol.45
, pp. 273-297
-
-
Bhaya, D.1
Davison, M.2
Barrangou, R.3
-
3
-
-
68249102788
-
CRISPR-based adaptive and heritable immunity in prokaryotes
-
van der Oost, J., Jore, M. M., Westra, E. R., Lundgren, M. and Brouns, S. J. (2009) CRISPR-based adaptive and heritable immunity in prokaryotes. Trends Biochem. Sci., 34, 401-407.
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 401-407
-
-
Van Der Oost, J.1
Jore, M.M.2
Westra, E.R.3
Lundgren, M.4
Brouns, S.J.5
-
4
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., Romero, D. A. and Horvath, P. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science, 315, 1709-1712.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
5
-
-
77956628107
-
Transcription, transcript processing and function of E. Coli CRISPR locus
-
Pougach, K., Semenova, E., Bogdanova, E., Datsenko, K. A., Djordjevic, M., Wanner, B. L. and Severinov, K. (2010) Transcription, transcript processing and function of E. coli CRISPR locus. Mol. Microbiol., 77, 1367-1379.
-
(2010)
Mol. Microbiol.
, vol.77
, pp. 1367-1379
-
-
Pougach, K.1
Semenova, E.2
Bogdanova, E.3
Datsenko, K.A.4
Djordjevic, M.5
Wanner, B.L.6
Severinov, K.7
-
6
-
-
79953250082
-
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
-
Deltcheva, E., Chylinski, K., Sharma, C. M., Gonzales, K., Chao, Y., Pirzada, Z. A., Eckert, M. R., Vogel, J. and Charpentier, E. (2011) CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature, 471, 602-607.
-
(2011)
Nature
, vol.471
, pp. 602-607
-
-
Deltcheva, E.1
Chylinski, K.2
Sharma, C.M.3
Gonzales, K.4
Chao, Y.5
Pirzada, Z.A.6
Eckert, M.R.7
Vogel, J.8
Charpentier, E.9
-
7
-
-
79955574254
-
Structural basis for CRISPR RNA-guided DNA recognition by Cascade
-
Jore, M. M., Lundgren, M., van Duijn, E., Bultema, J. B., Westra, E. R., Waghmare, S. P., Wiedenheft, B., Pul, U., Wurm, R., Wagner, R. et al. (2011) Structural basis for CRISPR RNA-guided DNA recognition by Cascade. Nat. Struct. Mol. Biol., 18, 529-536.
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 529-536
-
-
Jore, M.M.1
Lundgren, M.2
Van Duijn, E.3
Bultema, J.B.4
Westra, E.R.5
Waghmare, S.P.6
Wiedenheft, B.7
Pul, U.8
Wurm, R.9
Wagner, R.10
-
8
-
-
84881256166
-
In vitro reconstitution of an Escherichia coli RNA-guided immune system reveals unidirectional, ATP-dependent degradation of DNA target
-
Mulepati, S. and Bailey, S. (2013) In vitro reconstitution of an Escherichia coli RNA-guided immune system reveals unidirectional, ATP-dependent degradation of DNA target. J. Biol. Chem., 288, 22184-22192.
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 22184-22192
-
-
Mulepati, S.1
Bailey, S.2
-
9
-
-
84861996069
-
CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3
-
Westra, E. R., van Erp, P. B., Kunne, T., Wong, S. P., Staals, R. H., Seegers, C. L., Bollen, S., Jore, M. M., Semenova, E., Severinov, K. et al. (2012) CRISPR immunity relies on the consecutive binding and degradation of negatively supercoiled invader DNA by Cascade and Cas3. Mol. Cell, 46, 595-605.
-
(2012)
Mol. Cell
, vol.46
, pp. 595-605
-
-
Westra, E.R.1
Van Erp, P.B.2
Kunne, T.3
Wong, S.P.4
Staals, R.H.5
Seegers, C.L.6
Bollen, S.7
Jore, M.M.8
Semenova, E.9
Severinov, K.10
-
10
-
-
79960029056
-
RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
-
Wiedenheft, B., van Duijn, E., Bultema, J. B., Waghmare, S. P., Zhou, K., Barendregt, A., Westphalb, W., Heckc, A. J. R., Boekemad, E. J., Dickmane, M. J. et al. (2011). RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions. Proc. Natl. Acad. Sci. U. S. A., 108, 10092-10097.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 10092-10097
-
-
Wiedenheft, B.1
Van Duijn, E.2
Bultema, J.B.3
Waghmare, S.P.4
Zhou, K.5
Barendregt, A.6
Westphalb, W.7
Heckc, A.J.R.8
Boekemad, E.J.9
Dickmane, M.J.10
-
11
-
-
79959963663
-
Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
-
Semenova, E., Jore, M. M., Datsenko, K. A., Semenova, A., Westra, E. R., Wanner, B., van der Oost, J., Brouns, S. J. and Severinov, K. (2011) Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence. Proc. Natl. Acad. Sci. U. S. A., 108, 10098-10103.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 10098-10103
-
-
Semenova, E.1
Jore, M.M.2
Datsenko, K.A.3
Semenova, A.4
Westra, E.R.5
Wanner, B.6
Van Der Oost, J.7
Brouns, S.J.8
Severinov, K.9
-
12
-
-
38949123143
-
Phage response to CRISPR-encoded resistance in Streptococcus thermophilus
-
Deveau, H., Barrangou, R., Garneau, J. E., Labonté, J., Fremaux, C., Boyaval, P., Romero, D. A., Horvath, P. and Moineau, S. (2008) Phage response to CRISPR-encoded resistance in Streptococcus thermophilus. J. Bacteriol., 190, 1390-1400.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1390-1400
-
-
Deveau, H.1
Barrangou, R.2
Garneau, J.E.3
Labonté, J.4
Fremaux, C.5
Boyaval, P.6
Romero, D.A.7
Horvath, P.8
Moineau, S.9
-
13
-
-
84868143545
-
The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages
-
Cady, K. C., Bondy-Denomy, J., Heussler, G. E., Davidson, A. R. and O'Toole, G. A. (2012) The CRISPR/Cas adaptive immune system of Pseudomonas aeruginosa mediates resistance to naturally occurring and engineered phages. J. Bacteriol., 194, 5728-5738.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 5728-5738
-
-
Cady, K.C.1
Bondy-Denomy, J.2
Heussler, G.E.3
Davidson, A.R.4
O'Toole, G.A.5
-
14
-
-
84905594146
-
Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer
-
Richter, C., Dy, R. L., McKenzie, R. E., Watson, B. N., Taylor, C., Chang, J. T., McNeil, M. B., Staals, R. H. and Fineran, P. C. (2014) Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer. Nucleic Acids Res., 42, 8516-8526.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 8516-8526
-
-
Richter, C.1
Dy, R.L.2
McKenzie, R.E.3
Watson, B.N.4
Taylor, C.5
Chang, J.T.6
McNeil, M.B.7
Staals, R.H.8
Fineran, P.C.9
-
15
-
-
84857097177
-
RNA-guided genetic silencing systems in bacteria and archaea
-
Wiedenheft, B., Sternberg, S. H. and Doudna, J. A. (2012) RNA-guided genetic silencing systems in bacteria and archaea. Nature, 482, 331-338.
-
(2012)
Nature
, vol.482
, pp. 331-338
-
-
Wiedenheft, B.1
Sternberg, S.H.2
Doudna, J.A.3
-
16
-
-
79956157571
-
Evolution and classifcation of the CRISPR-Cas systems
-
Makarova, K. S., Haft, D. H., Barrangou, R., Brouns, S. J., Charpentier, E., Horvath, P., Moineau, S., Mojica, F. J., Wolf, Y. I., Yakunin, A. F. et al. (2011) Evolution and classifcation of the CRISPR-Cas systems. Nat. Rev. Microbiol., 9, 467-477.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
Horvath, P.6
Moineau, S.7
Mojica, F.J.8
Wolf, Y.I.9
Yakunin, A.F.10
-
17
-
-
64049118040
-
Short motif sequences determine the targets of the prokaryotic CRISPR defence system
-
Mojica, F. J., Díez-Villaseñor, C., García-Martínez, J. and Almendros, C. (2009) Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology, 155, 733-740.
-
(2009)
Microbiology
, vol.155
, pp. 733-740
-
-
Mojica, F.J.1
Díez-Villaseñor, C.2
García-Martínez, J.3
Almendros, C.4
-
18
-
-
84869997748
-
Target motifs affecting natural immunity by a constitutive CRISPR-Cas system in Escherichia coli
-
Almendros, C., Guzmán, N. M., Díez-Villaseñor, C., García-Martínez, J. and Mojica, F. J. (2012) Target motifs affecting natural immunity by a constitutive CRISPR-Cas system in Escherichia coli. PLoS One, 7, e50797.
-
(2012)
PLoS One
, vol.7
, pp. e50797
-
-
Almendros, C.1
Guzmán, N.M.2
Díez-Villaseñor, C.3
García-Martínez, J.4
Mojica, F.J.5
-
19
-
-
84941061778
-
Mechanism of foreign DNA recognition by a CRISPR RNA-guided surveillance complex from Pseudomonas aeruginosa
-
Rollins, M. F., Schuman, J. T., Paulus, K., Bukhari, H. S. and Wiedenheft, B. (2015) Mechanism of foreign DNA recognition by a CRISPR RNA-guided surveillance complex from Pseudomonas aeruginosa. Nucleic Acids Res., 43, 216-222.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 216-222
-
-
Rollins, M.F.1
Schuman, J.T.2
Paulus, K.3
Bukhari, H.S.4
Wiedenheft, B.5
-
20
-
-
84861639567
-
Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
-
Yosef, I., Goren, M. G. and Qimron, U. (2012) Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res., 40, 5569-5576.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5569-5576
-
-
Yosef, I.1
Goren, M.G.2
Qimron, U.3
-
21
-
-
84904019733
-
Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system
-
Arslan, Z., Hermanns, V., Wurm, R., Wagner, R. and Pul, Ü. (2014) Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system. Nucleic Acids Res., 42, 7884-7893.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 7884-7893
-
-
Arslan, Z.1
Hermanns, V.2
Wurm, R.3
Wagner, R.4
Pul, U.5
-
22
-
-
49649114086
-
Small CRISPR RNAs guide antiviral defense in prokaryotes
-
Brouns, S. J., Jore, M. M., Lundgren, M., Westra, E. R., Slijkhuis, R. J., Snijders, A. P., Dickman, M. J., Makarova, K. S., Koonin, E. V. and van der Oost, J. (2008) Small CRISPR RNAs guide antiviral defense in prokaryotes. Science, 321, 960-964.
-
(2008)
Science
, vol.321
, pp. 960-964
-
-
Brouns, S.J.1
Jore, M.M.2
Lundgren, M.3
Westra, E.R.4
Slijkhuis, R.J.5
Snijders, A.P.6
Dickman, M.J.7
Makarova, K.S.8
Koonin, E.V.9
Van Der Oost, J.10
-
23
-
-
84864864464
-
Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
-
Datsenko, K. A., Pougach, K., Tikhonov, A., Wanner, B. L., Severinov, K. and Semenova, E. (2012) Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat. Commun., 3, 945.
-
(2012)
Nat. Commun.
, vol.3
, pp. 945
-
-
Datsenko, K.A.1
Pougach, K.2
Tikhonov, A.3
Wanner, B.L.4
Severinov, K.5
Semenova, E.6
-
24
-
-
84860433123
-
CRISPR interference directs strand specifc spacer acquisition
-
Swarts, D. C., Mosterd, C., van Passel, M. W. and Brouns, S. J. (2012) CRISPR interference directs strand specifc spacer acquisition. PLoS One, 7, e35888.
-
(2012)
PLoS One
, vol.7
, pp. e35888
-
-
Swarts, D.C.1
Mosterd, C.2
Van Passel, M.W.3
Brouns, S.J.4
-
25
-
-
84895823059
-
Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purifed virus strictly requires a priming process
-
Li, M., Wang, R., Zhao, D. and Xiang, H. (2014) Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purifed virus strictly requires a priming process. Nucleic Acids Res., 42, 2483-2492.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 2483-2492
-
-
Li, M.1
Wang, R.2
Zhao, D.3
Xiang, H.4
-
26
-
-
84922998282
-
Cas9 function and host genome sampling in Type II-A CRISPR-Cas adaptation
-
Wei, Y., Terns, R. M. and Terns, M. P. (2015) Cas9 function and host genome sampling in Type II-A CRISPR-Cas adaptation. Genes Dev., 29, 356-361.
-
(2015)
Genes Dev.
, vol.29
, pp. 356-361
-
-
Wei, Y.1
Terns, R.M.2
Terns, M.P.3
-
27
-
-
84924705939
-
Cas9 specifes functional viral targets during CRISPR-Cas adaptation
-
Heler, R., Samai, P., Modell, J. W., Weiner, C., Goldberg, G. W., Bikard, D. and Marraffni, L. A. (2015) Cas9 specifes functional viral targets during CRISPR-Cas adaptation. Nature, 519, 199-202.
-
(2015)
Nature
, vol.519
, pp. 199-202
-
-
Heler, R.1
Samai, P.2
Modell, J.W.3
Weiner, C.4
Goldberg, G.W.5
Bikard, D.6
Marraffni, L.A.7
-
28
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko, K. A. and Wanner, B. L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U. S. A., 97, 6640-6645.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
29
-
-
77956213914
-
The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella
-
Touchon, M. and Rocha, E. P. C. (2010) The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella. PLoS One, 5, e11126.
-
(2010)
PLoS One
, vol.5
, pp. e11126
-
-
Touchon, M.1
Rocha, E.P.C.2
-
30
-
-
84872607723
-
Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system
-
Bondy-Denomy, J., Pawluk, A., Maxwell, K. L. and Davidson, A. R. (2013) Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature, 493, 429-432.
-
(2013)
Nature
, vol.493
, pp. 429-432
-
-
Bondy-Denomy, J.1
Pawluk, A.2
Maxwell, K.L.3
Davidson, A.R.4
-
31
-
-
0029199530
-
Escherichia coli electrotransformation
-
Miller, E. M. and Nickoloff, J. A. (1995) Escherichia coli electrotransformation. Methods Mol. Biol., 47, 105.
-
(1995)
Methods Mol. Biol.
, vol.47
, pp. 105
-
-
Miller, E.M.1
Nickoloff, J.A.2
-
32
-
-
84864139341
-
Use of semi-quantitative Northern blot analysis to determine relative quantities of bacterial CRISPR transcripts
-
Pougach, K. and Severinov, K. (2012) Use of semi-quantitative Northern blot analysis to determine relative quantities of bacterial CRISPR transcripts. Methods Mol. Biol., 905, 73-86.
-
(2012)
Methods Mol. Biol.
, vol.905
, pp. 73-86
-
-
Pougach, K.1
Severinov, K.2
-
33
-
-
70349866687
-
ShortRead: A bioconductor package for input, quality assessment and exploration of high-throughput sequence data
-
Morgan, M., Anders, S., Lawrence, M., Aboyoun, P., Pagès, H. and Gentleman, R. (2009) ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics, 25, 2607-2608.
-
(2009)
Bioinformatics
, vol.25
, pp. 2607-2608
-
-
Morgan, M.1
Anders, S.2
Lawrence, M.3
Aboyoun, P.4
Pagès, H.5
Gentleman, R.6
-
34
-
-
84879462012
-
-
R package version 2.24.1
-
Pages, H., Aboyoun, P., Gentleman, R. and Deb Roy, S. (2012) Biostrings: String objects representing biological sequences, and matching algorithms. R package version 2.24.1.
-
(2012)
Biostrings: String Objects Representing Biological Sequences, and Matching Algorithms
-
-
Pages, H.1
Aboyoun, P.2
Gentleman, R.3
Deb Roy, S.4
-
35
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., Jones, S. J. and Marra, M. A. (2009) Circos: an information aesthetic for comparative genomics. Genome Res., 19, 1639-1645.
-
(2009)
Genome Res.
, vol.19
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
36
-
-
66349134987
-
Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense
-
Wiedenheft, B., Zhou, K., Jinek, M., Coyle, S. M., Ma, W. and Doudna, J. A. (2009) Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense. Structure, 17, 904-912.
-
(2009)
Structure
, vol.17
, pp. 904-912
-
-
Wiedenheft, B.1
Zhou, K.2
Jinek, M.3
Coyle, S.M.4
Ma, W.5
Doudna, J.A.6
-
37
-
-
77956498326
-
Sequence- and structure-specifc RNA processing by a CRISPR endonuclease
-
Haurwitz, R. E., Jinek, M., Wiedenheft, B., Zhou, K. and Doudna, J. A. (2010) Sequence- and structure-specifc RNA processing by a CRISPR endonuclease. Science, 329, 1355-1358.
-
(2010)
Science
, vol.329
, pp. 1355-1358
-
-
Haurwitz, R.E.1
Jinek, M.2
Wiedenheft, B.3
Zhou, K.4
Doudna, J.A.5
-
38
-
-
84899866053
-
A new group of phage anti-CRISPR genes inhibits the type I-E CRISPR-Cas system of Pseudomonas aeruginosa
-
Pawluk, A., Bondy-Denomy, J., Cheung, V. H. W., Maxwell, K. L. and Davidson, A. R. (2014) A new group of phage anti-CRISPR genes inhibits the type I-E CRISPR-Cas system of Pseudomonas aeruginosa. mBio, 5, 896-914.
-
(2014)
MBio
, vol.5
, pp. 896-914
-
-
Pawluk, A.1
Bondy-Denomy, J.2
Cheung, V.H.W.3
Maxwell, K.L.4
Davidson, A.R.5
-
39
-
-
84879032013
-
In defense of phage: Viral suppressors of CRISPR-mediated adaptive immunity in bacteria
-
Wiedenheft, B. (2013) In defense of phage: viral suppressors of CRISPR-mediated adaptive immunity in bacteria. RNA Biol., 10, 886-890.
-
(2013)
RNA Biol.
, vol.10
, pp. 886-890
-
-
Wiedenheft, B.1
-
40
-
-
84943188033
-
Multiple mechanisms for CRISPR-Cas inhibition by anti-CRISPR proteins
-
Bondy-Denomy, J., Garcia, B., Strum, S., Du, M., Rollins, M. F., Hidalgo-Reyes, Y., Wiedenheft, B., Maxwell, K. L. and Davidson, A. R. (2015) Multiple mechanisms for CRISPR-Cas inhibition by anti-CRISPR proteins. Nature, doi:10.1038/nature15254.
-
(2015)
Nature
-
-
Bondy-Denomy, J.1
Garcia, B.2
Strum, S.3
Du, M.4
Rollins, M.F.5
Hidalgo-Reyes, Y.6
Wiedenheft, B.7
Maxwell, K.L.8
Davidson, A.R.9
-
41
-
-
84901307358
-
Pervasive generation of oppositely-oriented spacers during CRISPR adaptation
-
Shmakov, S., Savitskaya, E., Semenova, E., Datsenko, K. A. and Severinov, K. (2014) Pervasive generation of oppositely-oriented spacers during CRISPR adaptation. Nucleic Acids Res., 42, 5907-5916.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 5907-5916
-
-
Shmakov, S.1
Savitskaya, E.2
Semenova, E.3
Datsenko, K.A.4
Severinov, K.5
-
42
-
-
84883338164
-
DNA motifs determining the effciency of adaptation into the Escherichia coli CRISPR array
-
Yosef, I., Shitrit, D., Goren, M. G., Burstein, D., Pupko, T. and Qimron, U. (2013) DNA motifs determining the effciency of adaptation into the Escherichia coli CRISPR array. Proc. Natl. Acad. Sci. U. S. A., 110, 14396-14401.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 14396-14401
-
-
Yosef, I.1
Shitrit, D.2
Goren, M.G.3
Burstein, D.4
Pupko, T.5
Qimron, U.6
-
43
-
-
84899087750
-
Degenerate target sites mediate rapid primed CRISPR adaptation
-
Fineran, P. C., Gerritzen, M. J., Suárez-Diez, M., Künne, T., Boekhorst, J., van Hijum, S. A., Staals, R. H. and Brouns, S. J. (2014) Degenerate target sites mediate rapid primed CRISPR adaptation. Proc. Natl. Acad. Sci. U. S. A., 111, 1629-1638.
-
(2014)
Proc. Natl. Acad. Sci. U. S. A.
, vol.111
, pp. 1629-1638
-
-
Fineran, P.C.1
Gerritzen, M.J.2
Suárez-Diez, M.3
Künne, T.4
Boekhorst, J.5
Van Hijum, S.A.6
Staals, R.H.7
Brouns, S.J.8
-
45
-
-
84879009913
-
Cas3 stimulates runaway replication of a ColE1 plasmid in Escherichia coli and antagonises RNaseHI
-
Ivančić-Baće, I., Radovčić, M., Bočkor, L., Howard, J. L. and Bolt, E. L. (2013) Cas3 stimulates runaway replication of a ColE1 plasmid in Escherichia coli and antagonises RNaseHI. RNA Biol., 10, 770-778.
-
(2013)
RNA Biol.
, vol.10
, pp. 770-778
-
-
Ivančić-Baće, I.1
Radovčić, M.2
Bočkor, L.3
Howard, J.L.4
Bolt, E.L.5
-
46
-
-
84928473578
-
CRISPR adaptation biases explain preference for acquisition of foreign DNA
-
Levy, A., Goren, M. G., Yosef, I., Auster, O., Manor, M., Amitai, G., Edgar, R., Qimron, U. and Sorek, R. (2015) CRISPR adaptation biases explain preference for acquisition of foreign DNA. Nature, 520, 505-510.
-
(2015)
Nature
, vol.520
, pp. 505-510
-
-
Levy, A.1
Goren, M.G.2
Yosef, I.3
Auster, O.4
Manor, M.5
Amitai, G.6
Edgar, R.7
Qimron, U.8
Sorek, R.9
|