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Volumn 37, Issue , 2016, Pages 114-121

Modular co-culture engineering, a new approach for metabolic engineering

Author keywords

Microbial biosynthesis; Microbial co cultures; Modular co culture engineering; Pathway modularization

Indexed keywords

BIOCHEMISTRY; BIOSYNTHESIS; METABOLISM; MODULAR CONSTRUCTION;

EID: 84973519852     PISSN: 10967176     EISSN: 10967184     Source Type: Journal    
DOI: 10.1016/j.ymben.2016.05.007     Document Type: Review
Times cited : (211)

References (51)
  • 1
    • 84861443800 scopus 로고    scopus 로고
    • Natural strategies for the spatial optimization of metabolism in synthetic biology
    • Agapakis C.M., Boyle P.M., Silver P.A. Natural strategies for the spatial optimization of metabolism in synthetic biology. Nat. Chem. Biol. 2012, 8:527-535.
    • (2012) Nat. Chem. Biol. , vol.8 , pp. 527-535
    • Agapakis, C.M.1    Boyle, P.M.2    Silver, P.A.3
  • 2
    • 84862642945 scopus 로고    scopus 로고
    • Influence of oxidative and nitrosative stress on accumulation of diphosphate intermediates of the non-mevalonate pathway of isoprenoid biosynthesis in corynebacteria and mycobacteria
    • Artsatbanov V.Y., Vostroknutova G., Shleeva M., Goncharenko A., Zinin A., Ostrovsky D., Kapreliants A. Influence of oxidative and nitrosative stress on accumulation of diphosphate intermediates of the non-mevalonate pathway of isoprenoid biosynthesis in corynebacteria and mycobacteria. Biochem (Mosc. ) 2012, 77:362-371.
    • (2012) Biochem (Mosc. ) , vol.77 , pp. 362-371
    • Artsatbanov, V.Y.1    Vostroknutova, G.2    Shleeva, M.3    Goncharenko, A.4    Zinin, A.5    Ostrovsky, D.6    Kapreliants, A.7
  • 3
    • 84872163712 scopus 로고    scopus 로고
    • Engineering of synthetic intercellular communication systems
    • Bacchus W., Fussenegger M. Engineering of synthetic intercellular communication systems. Metab. Eng. 2013, 16:33-41.
    • (2013) Metab. Eng. , vol.16 , pp. 33-41
    • Bacchus, W.1    Fussenegger, M.2
  • 7
    • 49049105130 scopus 로고    scopus 로고
    • Engineering microbial consortia: a new frontier in synthetic biology
    • Brenner K., You L., Arnold F.H. Engineering microbial consortia: a new frontier in synthetic biology. Trends Biotechnol. 2008, 26:483-489.
    • (2008) Trends Biotechnol. , vol.26 , pp. 483-489
    • Brenner, K.1    You, L.2    Arnold, F.H.3
  • 8
    • 84892604041 scopus 로고    scopus 로고
    • Molecular diversity and tools for deciphering the methanogen community structure and diversity in freshwater sediments
    • Chaudhary P.P., Brablcova L., Buriankova I., Rulik M. Molecular diversity and tools for deciphering the methanogen community structure and diversity in freshwater sediments. Appl. Microbiol. Biotechnol. 2013, 97:7553-7562.
    • (2013) Appl. Microbiol. Biotechnol. , vol.97 , pp. 7553-7562
    • Chaudhary, P.P.1    Brablcova, L.2    Buriankova, I.3    Rulik, M.4
  • 9
    • 79956076689 scopus 로고    scopus 로고
    • Development and application of co-culture for ethanol production by co-fermentation of glucose and xylose: a systematic review
    • Chen Y. Development and application of co-culture for ethanol production by co-fermentation of glucose and xylose: a systematic review. J. Ind. Microbiol. Biotechnol. 2011, 38:581-597.
    • (2011) J. Ind. Microbiol. Biotechnol. , vol.38 , pp. 581-597
    • Chen, Y.1
  • 10
    • 84940536381 scopus 로고    scopus 로고
    • Emergent genetic oscillations in a synthetic microbial consortium
    • Chen Y., Kim J.K., Hirning A.J., Josić K., Bennett M.R. Emergent genetic oscillations in a synthetic microbial consortium. Science 2015, 349:986-989.
    • (2015) Science , vol.349 , pp. 986-989
    • Chen, Y.1    Kim, J.K.2    Hirning, A.J.3    Josić, K.4    Bennett, M.R.5
  • 11
    • 84905483334 scopus 로고    scopus 로고
    • Emergent biosynthetic capacity in simple microbial communities
    • Chiu H.-C., Levy R., Borenstein E. Emergent biosynthetic capacity in simple microbial communities. PLoS Comput. Biol. 2014, 10:e1003695.
    • (2014) PLoS Comput. Biol. , vol.10
    • Chiu, H.-C.1    Levy, R.2    Borenstein, E.3
  • 12
    • 60349117090 scopus 로고    scopus 로고
    • A substrate-selective co-fermentation strategy with Escherichia coli produces lactate by simultaneously consuming xylose and glucose
    • Eiteman M.A., Lee S.A., Altman R., Altman E. A substrate-selective co-fermentation strategy with Escherichia coli produces lactate by simultaneously consuming xylose and glucose. Biotechnol. Bioeng. 2009, 102:822-827.
    • (2009) Biotechnol. Bioeng. , vol.102 , pp. 822-827
    • Eiteman, M.A.1    Lee, S.A.2    Altman, R.3    Altman, E.4
  • 13
    • 79957972499 scopus 로고    scopus 로고
    • Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomass
    • Ferry J.G. Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomass. Curr. Opin. Biotechnol. 2011, 22:351-357.
    • (2011) Curr. Opin. Biotechnol. , vol.22 , pp. 351-357
    • Ferry, J.G.1
  • 14
    • 0037363293 scopus 로고    scopus 로고
    • A constructed microbial consortium for biodegradation of the organophosphorus insecticide parathion
    • Gilbert E., Walker A., Keasling J. A constructed microbial consortium for biodegradation of the organophosphorus insecticide parathion. Appl. Microbiol. Biotechnol. 2003, 61:77-81.
    • (2003) Appl. Microbiol. Biotechnol. , vol.61 , pp. 77-81
    • Gilbert, E.1    Walker, A.2    Keasling, J.3
  • 16
    • 84904613895 scopus 로고    scopus 로고
    • Design of synthetic microbial communities for biotechnological production processes
    • Jagmann N., Philipp B. Design of synthetic microbial communities for biotechnological production processes. J. Biotechnol. 2014, 184:209-218.
    • (2014) J. Biotechnol. , vol.184 , pp. 209-218
    • Jagmann, N.1    Philipp, B.2
  • 18
    • 84959934868 scopus 로고    scopus 로고
    • Optimizing metabolic pathways for the improved production of natural products
    • Jones J.A., Koffas M.A. Optimizing metabolic pathways for the improved production of natural products. Methods Enzym. 2016, 10.1016/bs.mie.2016.02.010.
    • (2016) Methods Enzym.
    • Jones, J.A.1    Koffas, M.A.2
  • 19
    • 84911920717 scopus 로고    scopus 로고
    • Metabolic pathway balancing and its role in the production of biofuels and chemicals
    • Jones J.A., Toparlak Ö.D., Koffas M.A. Metabolic pathway balancing and its role in the production of biofuels and chemicals. Curr. Opin. Biotechnol. 2015, 33:52-59.
    • (2015) Curr. Opin. Biotechnol. , vol.33 , pp. 52-59
    • Jones, J.A.1    Toparlak, O.D.2    Koffas, M.A.3
  • 21
    • 84859123293 scopus 로고    scopus 로고
    • A programmable Escherichia coli consortium via tunable symbiosis
    • Kerner A., Park J., Williams A., Lin X.N. A programmable Escherichia coli consortium via tunable symbiosis. PLoS One 2012, 7:e34032.
    • (2012) PLoS One , vol.7
    • Kerner, A.1    Park, J.2    Williams, A.3    Lin, X.N.4
  • 22
    • 0031754396 scopus 로고    scopus 로고
    • Large-scale production of UDP-galactose and globotriose by coupling metabolically engineered bacteria
    • Koizumi S., Endo T., Tabata K., Ozaki A. Large-scale production of UDP-galactose and globotriose by coupling metabolically engineered bacteria. Nat. Biotechnol. 1998, 16:847-850.
    • (1998) Nat. Biotechnol. , vol.16 , pp. 847-850
    • Koizumi, S.1    Endo, T.2    Tabata, K.3    Ozaki, A.4
  • 23
    • 84861440312 scopus 로고    scopus 로고
    • Systems metabolic engineering of microorganisms for natural and non-natural chemicals
    • Lee J.W., Na D., Park J.M., Lee J., Choi S., Lee S.Y. Systems metabolic engineering of microorganisms for natural and non-natural chemicals. Nat. Chem. Biol. 2012, 8:536-546.
    • (2012) Nat. Chem. Biol. , vol.8 , pp. 536-546
    • Lee, J.W.1    Na, D.2    Park, J.M.3    Lee, J.4    Choi, S.5    Lee, S.Y.6
  • 24
    • 41849137222 scopus 로고    scopus 로고
    • Removal of methyl parathion from artificial off-gas using a bioreactor containing a constructed microbial consortium
    • Li L., Yang C., Lan W., Xie S., Qiao C., Liu J. Removal of methyl parathion from artificial off-gas using a bioreactor containing a constructed microbial consortium. Environ. Sci. Technol. 2008, 42:2136-2141.
    • (2008) Environ. Sci. Technol. , vol.42 , pp. 2136-2141
    • Li, L.1    Yang, C.2    Lan, W.3    Xie, S.4    Qiao, C.5    Liu, J.6
  • 25
    • 84884535420 scopus 로고    scopus 로고
    • Peptide-based communication system enables Escherichia coli to Bacillus megaterium interspecies signaling
    • Marchand N., Collins C.H. Peptide-based communication system enables Escherichia coli to Bacillus megaterium interspecies signaling. Biotechnol. Bioeng. 2013, 110:3003-3012.
    • (2013) Biotechnol. Bioeng. , vol.110 , pp. 3003-3012
    • Marchand, N.1    Collins, C.H.2
  • 26
    • 84957799019 scopus 로고    scopus 로고
    • Engineering synthetic bacterial consortia for enhanced desulfurization and revalorization of oil sulfur compounds
    • Martinez I., Mohamed Mel S., Rozas D., Garcia J.L., Diaz E. Engineering synthetic bacterial consortia for enhanced desulfurization and revalorization of oil sulfur compounds. Metab. Eng. 2016, 35:46-54.
    • (2016) Metab. Eng. , vol.35 , pp. 46-54
    • Martinez, I.1    Mohamed Mel, S.2    Rozas, D.3    Garcia, J.L.4    Diaz, E.5
  • 29
    • 84883326386 scopus 로고    scopus 로고
    • Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass
    • Minty J.J., Singer M.E., Scholz S.A., Bae C.-H., Ahn J.-H., Foster C.E., Liao J.C., Lin X.N. Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass. Proc. Natl. Acad. Sci. USA 2013, 110:14592-14597.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 14592-14597
    • Minty, J.J.1    Singer, M.E.2    Scholz, S.A.3    Bae, C.-H.4    Ahn, J.-H.5    Foster, C.E.6    Liao, J.C.7    Lin, X.N.8
  • 30
    • 34249939324 scopus 로고    scopus 로고
    • Microbial communities in anaerobic digestion processes for waste and wastewater treatment: a microbiological update
    • Narihiro T., Sekiguchi Y. Microbial communities in anaerobic digestion processes for waste and wastewater treatment: a microbiological update. Curr. Opin. Biotechnol. 2007, 18:273-278.
    • (2007) Curr. Opin. Biotechnol. , vol.18 , pp. 273-278
    • Narihiro, T.1    Sekiguchi, Y.2
  • 31
    • 84861997084 scopus 로고    scopus 로고
    • Microbial communities involved in enhanced biological phosphorus removal from wastewater--a model system in environmental biotechnology
    • Nielsen P.H., Saunders A.M., Hansen A.A., Larsen P., Nielsen J.L. Microbial communities involved in enhanced biological phosphorus removal from wastewater--a model system in environmental biotechnology. Curr. Opin. Biotechnol. 2012, 23:452-459.
    • (2012) Curr. Opin. Biotechnol. , vol.23 , pp. 452-459
    • Nielsen, P.H.1    Saunders, A.M.2    Hansen, A.A.3    Larsen, P.4    Nielsen, J.L.5
  • 32
    • 70349765859 scopus 로고    scopus 로고
    • Engineering multicellular systems by cell-cell communication
    • Pai A., Tanouchi Y., Collins C.H., You L. Engineering multicellular systems by cell-cell communication. Curr. Opin. Biotechnol. 2009, 20:461-470.
    • (2009) Curr. Opin. Biotechnol. , vol.20 , pp. 461-470
    • Pai, A.1    Tanouchi, Y.2    Collins, C.H.3    You, L.4
  • 33
    • 77958571424 scopus 로고    scopus 로고
    • Biosystems analysis and engineering of microbial consortia for industrial biotechnology
    • Sabra W., Dietz D., Tjahjasari D., Zeng A.P. Biosystems analysis and engineering of microbial consortia for industrial biotechnology. Eng. Life Sci. 2010, 10:407-421.
    • (2010) Eng. Life Sci. , vol.10 , pp. 407-421
    • Sabra, W.1    Dietz, D.2    Tjahjasari, D.3    Zeng, A.P.4
  • 34
    • 84913558396 scopus 로고    scopus 로고
    • Potential production platform of n-butanol in Escherichia coli
    • Saini M., Chen M.H., Chiang C.-J., Chao Y.-P. Potential production platform of n-butanol in Escherichia coli. Metab. Eng. 2015, 27:76-82.
    • (2015) Metab. Eng. , vol.27 , pp. 76-82
    • Saini, M.1    Chen, M.H.2    Chiang, C.-J.3    Chao, Y.-P.4
  • 35
    • 84960104242 scopus 로고    scopus 로고
    • Production of biobutanol from cellulose hydrolysate by the Escherichia coli co-culture system
    • Saini M., Chiang C.-J., Li S.-Y., Chao Y.-P. Production of biobutanol from cellulose hydrolysate by the Escherichia coli co-culture system. FEMS Microbiol. Lett. 2016, 363.
    • (2016) FEMS Microbiol. Lett. , pp. 363
    • Saini, M.1    Chiang, C.-J.2    Li, S.-Y.3    Chao, Y.-P.4
  • 36
    • 78650396610 scopus 로고    scopus 로고
    • Escherichia coli binary culture engineered for direct fermentation of hemicellulose to a biofuel
    • Shin H.-D., McClendon S., Vo T., Chen R.R. Escherichia coli binary culture engineered for direct fermentation of hemicellulose to a biofuel. Appl. Environ. Microbiol. 2010, 76:8150-8159.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 8150-8159
    • Shin, H.-D.1    McClendon, S.2    Vo, T.3    Chen, R.R.4
  • 37
    • 33846936445 scopus 로고    scopus 로고
    • Synthetic cooperation in engineered yeast populations
    • Shou W., Ram S., Vilar J.M. Synthetic cooperation in engineered yeast populations. Proc. Natl. Acad. Sci. USA 2007, 104:1877-1882.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 1877-1882
    • Shou, W.1    Ram, S.2    Vilar, J.M.3
  • 38
    • 84907841705 scopus 로고    scopus 로고
    • Synthetic microbial consortia: from systematic analysis to construction and applications
    • Song H., Ding M.-Z., Jia X.-Q., Ma Q., Yuan Y.-J. Synthetic microbial consortia: from systematic analysis to construction and applications. Chem. Soc. Rev. 2014, 43:6954-6981.
    • (2014) Chem. Soc. Rev. , vol.43 , pp. 6954-6981
    • Song, H.1    Ding, M.-Z.2    Jia, X.-Q.3    Ma, Q.4    Yuan, Y.-J.5
  • 39
    • 0032133038 scopus 로고    scopus 로고
    • Production of a mixture of antimicrobial organic acids from lactose by co-culture of Bifidobacterium longum and Propionibacterium freudenreichii
    • Taniguchi M., Nakazawa H., Takeda O., Kaneko T., Hoshino K., Tanaka T. Production of a mixture of antimicrobial organic acids from lactose by co-culture of Bifidobacterium longum and Propionibacterium freudenreichii. Biosci., Biotechnol. Biochem. 1998, 62:1522-1527.
    • (1998) Biosci., Biotechnol. Biochem. , vol.62 , pp. 1522-1527
    • Taniguchi, M.1    Nakazawa, H.2    Takeda, O.3    Kaneko, T.4    Hoshino, K.5    Tanaka, T.6
  • 40
    • 84959086912 scopus 로고    scopus 로고
    • Reorganization of a synthetic microbial consortium for one-step vitamin C fermentation
    • Wang E.-X., Ding M.-Z., Ma Q., Dong X.-T., Yuan Y.-J. Reorganization of a synthetic microbial consortium for one-step vitamin C fermentation. Microb. Cell Factor 2016, 15:1.
    • (2016) Microb. Cell Factor , vol.15 , pp. 1
    • Wang, E.-X.1    Ding, M.-Z.2    Ma, Q.3    Dong, X.-T.4    Yuan, Y.-J.5
  • 41
    • 84925955420 scopus 로고    scopus 로고
    • Coupling limonene formation and oxyfunctionalization by mixed-culture resting cell fermentation
    • Willrodt C., Hoschek A., Bühler B., Schmid A., Julsing M.K. Coupling limonene formation and oxyfunctionalization by mixed-culture resting cell fermentation. Biotechnol. Bioeng. 2015, 112:1738-1750.
    • (2015) Biotechnol. Bioeng. , vol.112 , pp. 1738-1750
    • Willrodt, C.1    Hoschek, A.2    Bühler, B.3    Schmid, A.4    Julsing, M.K.5
  • 43
    • 84961223765 scopus 로고    scopus 로고
    • Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications
    • Wu G., Yan Q., Jones J.A., Tang Y.J., Fong S.S., Koffas M.A.G. Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications. Trends Biotechnol. 2016, 10.1016/j.tibtech.2016.02.010.
    • (2016) Trends Biotechnol.
    • Wu, G.1    Yan, Q.2    Jones, J.A.3    Tang, Y.J.4    Fong, S.S.5    Koffas, M.A.G.6
  • 44
    • 84941558348 scopus 로고    scopus 로고
    • Engineering E. coli-E. coli cocultures for production of muconic acid from glycerol
    • Zhang H., Li Z., Pereira B., Stephanopoulos G. Engineering E. coli-E. coli cocultures for production of muconic acid from glycerol. Microb. Cell Factor. 2015, 14:1.
    • (2015) Microb. Cell Factor. , vol.14 , pp. 1
    • Zhang, H.1    Li, Z.2    Pereira, B.3    Stephanopoulos, G.4
  • 45
    • 84936803078 scopus 로고    scopus 로고
    • Engineering Escherichia coli coculture systems for the production of biochemical products
    • Zhang H., Pereira B., Li Z., Stephanopoulos G. Engineering Escherichia coli coculture systems for the production of biochemical products. Proc. Natl. Acad. Sci. USA 2015, 112:8266-8271.
    • (2015) Proc. Natl. Acad. Sci. USA , vol.112 , pp. 8266-8271
    • Zhang, H.1    Pereira, B.2    Li, Z.3    Stephanopoulos, G.4
  • 46
    • 84977538578 scopus 로고    scopus 로고
    • Co-culture engineering for microbial biosynthesis of 3-amino-benzoic acid in E. coli
    • Zhang H., Stephanopoulos G. Co-culture engineering for microbial biosynthesis of 3-amino-benzoic acid in E. coli. Biotechnol. J. 2016, 10.1002/biot.201600013.
    • (2016) Biotechnol. J.
    • Zhang, H.1    Stephanopoulos, G.2
  • 47
    • 52649170330 scopus 로고    scopus 로고
    • Functional assembly of a microbial consortium with autofluorescent and mineralizing activity for the biodegradation of organophosphates
    • Zhang H., Yang C., Li C., Li L., Zhao Q., Qiao C. Functional assembly of a microbial consortium with autofluorescent and mineralizing activity for the biodegradation of organophosphates. J. Agric. Food Chem. 2008, 56:7897-7902.
    • (2008) J. Agric. Food Chem. , vol.56 , pp. 7897-7902
    • Zhang, H.1    Yang, C.2    Li, C.3    Li, L.4    Zhao, Q.5    Qiao, C.6
  • 49
    • 84926646130 scopus 로고    scopus 로고
    • Distributing a metabolic pathway among a microbial consortium enhances production of natural products
    • Zhou K., Qiao K., Edgar S., Stephanopoulos G. Distributing a metabolic pathway among a microbial consortium enhances production of natural products. Nat. Biotechnol. 2015, 33:377-383.
    • (2015) Nat. Biotechnol. , vol.33 , pp. 377-383
    • Zhou, K.1    Qiao, K.2    Edgar, S.3    Stephanopoulos, G.4
  • 50
    • 84868318317 scopus 로고    scopus 로고
    • Metabolite profiling identified methylerythritol cyclodiphosphate efflux as a limiting step in microbial isoprenoid production
    • Zhou K., Zou R., Stephanopoulos G., Too H.-P. Metabolite profiling identified methylerythritol cyclodiphosphate efflux as a limiting step in microbial isoprenoid production. PLoS One 2012, 7:e47513.
    • (2012) PLoS One , vol.7
    • Zhou, K.1    Zou, R.2    Stephanopoulos, G.3    Too, H.-P.4
  • 51
    • 84876784021 scopus 로고    scopus 로고
    • Consortia-mediated bioprocessing of cellulose to ethanol with a symbiotic Clostridium phytofermentans/yeast co-culture
    • Zuroff T.R., Xiques S.B., Curtis W.R. Consortia-mediated bioprocessing of cellulose to ethanol with a symbiotic Clostridium phytofermentans/yeast co-culture. Biotechnol. Biofuels 2013, 6:1.
    • (2013) Biotechnol. Biofuels , vol.6 , pp. 1
    • Zuroff, T.R.1    Xiques, S.B.2    Curtis, W.R.3


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