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Volumn 8, Issue 3, 2016, Pages 399-406

Mining metagenomic whole genome sequences revealed subdominant but constant Lactobacillus population in the human gut microbiota

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL LOAD; CLASSIFICATION; GASTROINTESTINAL TRACT; GENETICS; HUMAN; LACTOBACILLUS; LONGITUDINAL STUDY; METAGENOMICS; MICROBIOLOGY; MICROFLORA;

EID: 84969523065     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/1758-2229.12405     Document Type: Article
Times cited : (64)

References (48)
  • 6
    • 0038342847 scopus 로고    scopus 로고
    • Increased complexity of the species composition of lactic acid bacteria in human feces revealed by alternative incubation condition
    • Dal Bello, F., Walter, J., Hammes, W.P., and Hertel, C. (2003) Increased complexity of the species composition of lactic acid bacteria in human feces revealed by alternative incubation condition. Microb Ecol 45: 455-463.
    • (2003) Microb Ecol , vol.45 , pp. 455-463
    • Dal Bello, F.1    Walter, J.2    Hammes, W.P.3    Hertel, C.4
  • 7
    • 34547448232 scopus 로고    scopus 로고
    • Dominant cultivable Lactobacillus species from the feces of healthy adults in northern Spain
    • Delgado, S., Suárez, A., and Mayo, B. (2007) Dominant cultivable Lactobacillus species from the feces of healthy adults in northern Spain. Int Microbiol 10: 141-145.
    • (2007) Int Microbiol , vol.10 , pp. 141-145
    • Delgado, S.1    Suárez, A.2    Mayo, B.3
  • 8
    • 84906841405 scopus 로고    scopus 로고
    • Functional genomics of lactic acid bacteria: from food to health
    • Douillard, F.P., and de Vos, W.M. (2014) Functional genomics of lactic acid bacteria: from food to health. Microb Cell Fact 13: S8.
    • (2014) Microb Cell Fact , vol.13 , pp. S8
    • Douillard, F.P.1    de Vos, W.M.2
  • 9
    • 34248215190 scopus 로고    scopus 로고
    • Lactobacillus composti sp. nov., a lactic acid bacterium isolated from a compost of distilled shochu residue
    • Endo, A., and Okada, S. (2007a) Lactobacillus composti sp. nov., a lactic acid bacterium isolated from a compost of distilled shochu residue. Int J Syst Evol Microbiol 57: 870-872.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 870-872
    • Endo, A.1    Okada, S.2
  • 10
    • 34248203698 scopus 로고    scopus 로고
    • Lactobacillus farraginis sp. nov. and Lactobacillus parafarraginis sp. nov., heterofermentative lactobacilli isolated from a compost of distilled shochu residue
    • Endo, A., and Okada, S. (2007b) Lactobacillus farraginis sp. nov. and Lactobacillus parafarraginis sp. nov., heterofermentative lactobacilli isolated from a compost of distilled shochu residue. Int J Syst Evol Microbiol 57: 708-712.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 708-712
    • Endo, A.1    Okada, S.2
  • 12
    • 36549028432 scopus 로고    scopus 로고
    • Gastrointestinal microbiology enters the metagenomics era
    • Frank, D.N., and Pace N.R. (2008) Gastrointestinal microbiology enters the metagenomics era. Curr Opin Gastroenterol 24: 4-10.
    • (2008) Curr Opin Gastroenterol , vol.24 , pp. 4-10
    • Frank, D.N.1    Pace, N.R.2
  • 13
    • 34248221396 scopus 로고    scopus 로고
    • The genera Lactobacillus and Carnobacterium
    • In, 3rd edn, Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.H., and Stackenbrandt, E. (eds). New York: Springer
    • Hammes, W.P., and Hertel, C. (2006) The genera Lactobacillus and Carnobacterium. In The Prokaryotes, 3rd edn, Vol. 4. Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.H., and Stackenbrandt, E. (eds). New York: Springer, pp. 319-402.
    • (2006) The Prokaryotes , vol.4 , pp. 319-402
    • Hammes, W.P.1    Hertel, C.2
  • 14
    • 0032921264 scopus 로고    scopus 로고
    • Comparison of media for the detection of bifidobacteria, lactobacilli and total anaerobes from faecal samples
    • Hartemink, R., and Rombouts, F.M. (1999) Comparison of media for the detection of bifidobacteria, lactobacilli and total anaerobes from faecal samples. J Microbiol Methods 36: 181-192.
    • (1999) J Microbiol Methods , vol.36 , pp. 181-192
    • Hartemink, R.1    Rombouts, F.M.2
  • 15
    • 0036139245 scopus 로고    scopus 로고
    • Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA
    • Heilig, H.G., Zoetendal, E.G., Vaughan, E.E., Marteau, P., Akkermans, A.D., and de Vos, W.M. (2002) Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA. Appl Environ Microbiol 68: 114-123.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 114-123
    • Heilig, H.G.1    Zoetendal, E.G.2    Vaughan, E.E.3    Marteau, P.4    Akkermans, A.D.5    de Vos, W.M.6
  • 16
  • 17
    • 17644390588 scopus 로고    scopus 로고
    • Biodiversity of Lactobacillus sanfranciscensis strains isolated from five sourdoughs
    • Kitahara, M., Sakata, S., and Benno, Y. (2005) Biodiversity of Lactobacillus sanfranciscensis strains isolated from five sourdoughs. Lett Appl Microbiol 40: 353-357.
    • (2005) Lett Appl Microbiol , vol.40 , pp. 353-357
    • Kitahara, M.1    Sakata, S.2    Benno, Y.3
  • 20
    • 0034985477 scopus 로고    scopus 로고
    • Lactobacillus psittaci sp. nov., isolated from a hyacinth macaw (Anodorhynchus hyacinthinus)
    • Lawson, P.A., Wacher, C., Hansson, I., Falsen, E., and Collins, M.D. (2001) Lactobacillus psittaci sp. nov., isolated from a hyacinth macaw (Anodorhynchus hyacinthinus). Int J Syst Evol Microbiol 51: 967-970.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 967-970
    • Lawson, P.A.1    Wacher, C.2    Hansson, I.3    Falsen, E.4    Collins, M.D.5
  • 21
    • 1042290278 scopus 로고    scopus 로고
    • Lactic acid bacteria as functional starter cultures for the food fermentation industry
    • Leroy, F., and De Vuyst, L. (2004) Lactic acid bacteria as functional starter cultures for the food fermentation industry. Trends Food Sci Technol 15: 67-78.
    • (2004) Trends Food Sci Technol , vol.15 , pp. 67-78
    • Leroy, F.1    De Vuyst, L.2
  • 22
    • 81255157867 scopus 로고    scopus 로고
    • Oral and faecal lactobacilli and their expression of mannose-specific adhesins in individuals with and without IgA deficiency
    • Lönnermark, E., Nowrouzinan, F., Adlerberth, I., Ahrné, S., Wold, A., and Friman, V. (2012) Oral and faecal lactobacilli and their expression of mannose-specific adhesins in individuals with and without IgA deficiency. Int J Med Microbiol 302: 53-60.
    • (2012) Int J Med Microbiol , vol.302 , pp. 53-60
    • Lönnermark, E.1    Nowrouzinan, F.2    Adlerberth, I.3    Ahrné, S.4    Wold, A.5    Friman, V.6
  • 23
    • 84893688730 scopus 로고    scopus 로고
    • Current taxonomy of phages infecting lactic acid bacteria
    • Mahony, J., and van Sinderen, D. (2014) Current taxonomy of phages infecting lactic acid bacteria. Front Microbiol 5: 7.
    • (2014) Front Microbiol , vol.5 , pp. 7
    • Mahony, J.1    van Sinderen, D.2
  • 25
    • 25144459549 scopus 로고    scopus 로고
    • Lactobacillus harbinensis sp. nov., consisted of strains isolated from traditional fermented vegetables 'Suan cai' in Harbin, Northeastern China and Lactobacillus perolens DSM 12745
    • Miyamoto, M., Seto, Y., Hao, D.H., Teshima, T., Sun, Y.B., Kabuki, T., et al. (2005) Lactobacillus harbinensis sp. nov., consisted of strains isolated from traditional fermented vegetables 'Suan cai' in Harbin, Northeastern China and Lactobacillus perolens DSM 12745. Syst Appl Microbiol 28: 688-694.
    • (2005) Syst Appl Microbiol , vol.28 , pp. 688-694
    • Miyamoto, M.1    Seto, Y.2    Hao, D.H.3    Teshima, T.4    Sun, Y.B.5    Kabuki, T.6
  • 26
    • 76849086045 scopus 로고    scopus 로고
    • Lactobacillus equicursoris sp. nov., isolated from the faeces of a thoroughbred racehorse
    • Morita, H., Shimazu, M., Shiono, H., Toh, H., Nakajima, F., Akita, H., et al. (2010) Lactobacillus equicursoris sp. nov., isolated from the faeces of a thoroughbred racehorse. Int J Syst Evol Microbiol 60: 109-112.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 109-112
    • Morita, H.1    Shimazu, M.2    Shiono, H.3    Toh, H.4    Nakajima, F.5    Akita, H.6
  • 27
    • 0036157916 scopus 로고    scopus 로고
    • Lactobacillus equi sp. nov., a predominant intestinal Lactobacillus species of the horse isolated from faeces of healthy horses
    • Morotomi, M., Yuki, N., Kado, Y., Kushiro, A., Shimazaki, T., Watanabe, K., and Yuyama T. (2002) Lactobacillus equi sp. nov., a predominant intestinal Lactobacillus species of the horse isolated from faeces of healthy horses. Int J Syst Evol Microbiol 52: 211-214.
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 211-214
    • Morotomi, M.1    Yuki, N.2    Kado, Y.3    Kushiro, A.4    Shimazaki, T.5    Watanabe, K.6    Yuyama, T.7
  • 28
    • 79952788509 scopus 로고    scopus 로고
    • Genome sequence of Lactobacillus farciminis KCTC 3681
    • Nam, S.H., Choi, S.H., Kang, A., Kim, D.W., Kim, R.N., Kim, A., et al. (2011a) Genome sequence of Lactobacillus farciminis KCTC 3681. J Bacteriol 193: 1790-1791.
    • (2011) J Bacteriol , vol.193 , pp. 1790-1791
    • Nam, S.H.1    Choi, S.H.2    Kang, A.3    Kim, D.W.4    Kim, R.N.5    Kim, A.6
  • 29
    • 80053585099 scopus 로고    scopus 로고
    • Genome sequence of Lactobacillus suebicus KCTC 3549
    • Nam, S.H., Choi, S.H., Kang, A., Kim, D.W., Kim, R.N., Kim, D.S., et al. (2011b) Genome sequence of Lactobacillus suebicus KCTC 3549. J Bacteriol 193: 5532-5533.
    • (2011) J Bacteriol , vol.193 , pp. 5532-5533
    • Nam, S.H.1    Choi, S.H.2    Kang, A.3    Kim, D.W.4    Kim, R.N.5    Kim, D.S.6
  • 30
    • 84878469861 scopus 로고    scopus 로고
    • Catabolic flexibility of mammalian-associated lactobacilli
    • O'Donnell, M.M., O'Toole, P.W., and Ross, R.P. (2013) Catabolic flexibility of mammalian-associated lactobacilli. Microb Cell Fact 12: 48.
    • (2013) Microb Cell Fact , vol.12 , pp. 48
    • O'Donnell, M.M.1    O'Toole, P.W.2    Ross, R.P.3
  • 31
    • 33745594044 scopus 로고    scopus 로고
    • The gut flora as a forgotten organ
    • O'Hara, A.M., and Shanahan, F. (2006) The gut flora as a forgotten organ. EMBO Rep 7: 688-693.
    • (2006) EMBO Rep , vol.7 , pp. 688-693
    • O'Hara, A.M.1    Shanahan, F.2
  • 32
    • 84946740229 scopus 로고    scopus 로고
    • The human gut virome: a multifaceted majority
    • Ogilvie, L.A., and Jones, B.V. (2015) The human gut virome: a multifaceted majority. Front Microbiol 6: 918.
    • (2015) Front Microbiol , vol.6 , pp. 918
    • Ogilvie, L.A.1    Jones, B.V.2
  • 33
    • 84937825957 scopus 로고    scopus 로고
    • Practical identification of human originated Lactobacillus species by amplified ribosomal DNA restriction analysis (ARDRA) for probiotic use
    • Öztürk, M., and Meterelliyöz, M. (2015) Practical identification of human originated Lactobacillus species by amplified ribosomal DNA restriction analysis (ARDRA) for probiotic use. Mol Biol Rep 42: 1323-1332.
    • (2015) Mol Biol Rep , vol.42 , pp. 1323-1332
    • Öztürk, M.1    Meterelliyöz, M.2
  • 34
    • 84891817929 scopus 로고    scopus 로고
    • LPSN-list of prokaryotic names with standing in nomenclature
    • Parte, A.C. (2014) LPSN-list of prokaryotic names with standing in nomenclature. Nucleic Acids Res 42: D613-D616.
    • (2014) Nucleic Acids Res , vol.42 , pp. D613-D616
    • Parte, A.C.1
  • 35
    • 84960343203 scopus 로고    scopus 로고
    • Comparison of culture-dependent and independent approaches to characterize fecal bifidobacteria and lactobacilli
    • Quartieri, A., Simone, M., Gozzoli, C., Popovic, M., D'Auria, G., Amaretti, A., et al. (2016) Comparison of culture-dependent and independent approaches to characterize fecal bifidobacteria and lactobacilli. Anaerobe, 38: 130-137.
    • (2016) Anaerobe , vol.38 , pp. 130-137
    • Quartieri, A.1    Simone, M.2    Gozzoli, C.3    Popovic, M.4    D'Auria, G.5    Amaretti, A.6
  • 36
    • 84927692256 scopus 로고    scopus 로고
    • The first 1000 cultured species of the human gastrointestinal microbiota
    • Rajilić-Stojanović, M., and de Vos, W.M. (2014) The first 1000 cultured species of the human gastrointestinal microbiota. FEMS Microbiol Rev 38: 996-1047.
    • (2014) FEMS Microbiol Rev , vol.38 , pp. 996-1047
    • Rajilić-Stojanović, M.1    de Vos, W.M.2
  • 37
    • 0035156787 scopus 로고    scopus 로고
    • The Lactobacillus and Bifidobacterium microflora of the human intestine: composition and succession
    • Reuter, G. (2001) The Lactobacillus and Bifidobacterium microflora of the human intestine: composition and succession. Curr Issues Intest Microbiol 2: 43-53.
    • (2001) Curr Issues Intest Microbiol , vol.2 , pp. 43-53
    • Reuter, G.1
  • 42
    • 33748307611 scopus 로고    scopus 로고
    • Evaluation of culture media for selective enumeration of probiotic strains of lactobacilli and bifidobacteria in combination with yoghurt or cheese starters
    • Van de Casteele, S., Vanheuverzwijn, T., Ruyssen, T., Van Assche, P., Swings, J., and Huys, G. (2006) Evaluation of culture media for selective enumeration of probiotic strains of lactobacilli and bifidobacteria in combination with yoghurt or cheese starters. Int Dairy J 16: 1470-1476.
    • (2006) Int Dairy J , vol.16 , pp. 1470-1476
    • Van de Casteele, S.1    Vanheuverzwijn, T.2    Ruyssen, T.3    Van Assche, P.4    Swings, J.5    Huys, G.6
  • 44
    • 33845634368 scopus 로고    scopus 로고
    • Genomic diversity of cultivable Lactobacillus populations residing in the neonatal and adult gastrointestinal tract
    • Wall, R., Fitzgerald, G., Hussey, S., Ryan, T., Murphy, B., Ross, P., and Stanton, C. (2007) Genomic diversity of cultivable Lactobacillus populations residing in the neonatal and adult gastrointestinal tract. FEMS Microbiol Ecol 59: 127-137.
    • (2007) FEMS Microbiol Ecol , vol.59 , pp. 127-137
    • Wall, R.1    Fitzgerald, G.2    Hussey, S.3    Ryan, T.4    Murphy, B.5    Ross, P.6    Stanton, C.7
  • 45
    • 50049098340 scopus 로고    scopus 로고
    • Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research
    • Walter, J. (2008) Ecological role of lactobacilli in the gastrointestinal tract: implications for fundamental and biomedical research. Appl Environ Microbiol 74: 4985-9496.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 4985-9496
    • Walter, J.1
  • 46
    • 66149109659 scopus 로고    scopus 로고
    • Lactobacillus kisonensis sp. nov., Lactobacillus otakiensis sp. nov., Lactobacillus rapi sp. nov. and Lactobacillus sunkii sp. nov., heterofermentative species isolated from sunki, a traditional Japanese pickle
    • Watanabe, K., Fujimoto, J., Tomii, Y., Sasamoto, M., Makino, H., Kudo, Y., and Okada, S. (2009) Lactobacillus kisonensis sp. nov., Lactobacillus otakiensis sp. nov., Lactobacillus rapi sp. nov. and Lactobacillus sunkii sp. nov., heterofermentative species isolated from sunki, a traditional Japanese pickle. Int J Syst Evol Microbiol 59: 754-760.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 754-760
    • Watanabe, K.1    Fujimoto, J.2    Tomii, Y.3    Sasamoto, M.4    Makino, H.5    Kudo, Y.6    Okada, S.7
  • 47
  • 48
    • 84877859030 scopus 로고    scopus 로고
    • Lactobacillus shenzhenensis sp. nov., isolated from a fermented dairy beverage
    • Zou, Y., Liu, F., Fang, C., Wan, D., Yang, R., Su, Q., et al. (2013) Lactobacillus shenzhenensis sp. nov., isolated from a fermented dairy beverage. Int J Syst Evol Microbiol 63: 1817-1823.
    • (2013) Int J Syst Evol Microbiol , vol.63 , pp. 1817-1823
    • Zou, Y.1    Liu, F.2    Fang, C.3    Wan, D.4    Yang, R.5    Su, Q.6


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