Lactobacillus pobuzihii sp. nov., isolated from pobuzihi (fermented cummingcordia)

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 8, 2010, Pages 1914-1917

  Chen, Yi Sheng ^a,b   Miyashita, Mika ^c   Suzuki, Ken Ichiro ^c   Sato, Hajime ^c   Hsu, Jar Sheng ^d   Yanagida, Fujitoshi ^b  

^a MING CHUAN UNIVERSITY   (Taiwan)

^b UNIVERSITY OF YAMANASHI   (Japan)

^c NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

^d Kokumori Foods Co Ltd   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ACID; ARABINOSE; GLUCONIC ACID; LACTOSE; MANNITOL; RHAMNOSE; RNA 16S;

ARTICLE; BACTERIUM ISOLATION; FERMENTATION; FOOD CONTAMINATION; FOOD ORGANISM; GENE SEQUENCE; LACTIC ACID BACTERIUM; LACTOBACILLUS; LACTOBACILLUS ACIDIPISCIS; LACTOBACILLUS POBUZIHII; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; TAIWAN;

CARBOHYDRATE METABOLISM; CORDIA; DNA, BACTERIAL; DNA, RIBOSOMAL; FERMENTATION; LACTOBACILLUS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S;

LACTOBACILLUS; LACTOBACILLUS ACIDIPISCIS;

EID: 77955602207     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.016873-0     Document Type: Article

References (23)

1. Chen, Y.-S., Yanagida, F. & Shinohara, T. (2005). Isolation and identification of lactic acid bacteria from soil using an enrichment procedure. Lett Appl Microbiol 40, 195-200.
2. Chen, Y.-S., Yanagida, F. & Hsu, J.-S. (2006a). Isolation and characterization of lactic acid bacteria from suan-tsai (fermented mustard), a traditional fermented food in Taiwan. J Appl Microbiol 101, 125-130. (Pubitemid 43952012)
3. Chen, Y.-S., Yanagida, F. & Hsu, J.-S. (2006b). Isolation and characterization of lactic acid bacteria from dochi (fermented black beans), a traditional fermented food in Taiwan. Lett Appl Microbiol 43, 229-235. (Pubitemid 44050641)
4. Christensen, J. E., Reynolds, C. E., Shukla, S. K. & Reed, K. D. (2004). Rapid molecular diagnosis of Lactobacillus bacteremia by terminal restriction fragment length polymorphism analysis of the 16S rRNA gene. Clin Med Res 2, 37-45.
5. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
9. Fitch, W. M. (1977). On the problem of discovering the most parsimonious tree. Am Nat 111, 223-257.
10. Gurtler, V., Wilson, V. A. & Mayall, C. (1991). Classification of medically important clostridia using restriction endonuclease site differences of PCR-amplified 16S rDNA. J Gen Microbiol 137, 2673-2679.
11. Johansson, M. L., Quednau, M., Ahrne, S. & Molin, G. (1995). Classification of Lactobacillus plantarum by restriction endonuclease analysis of total chromosomal DNA using conventional agarose gel electrophoresis. Int J Syst Bacteriol 45, 670-675.
12. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
13. Lawson, P. A., Papademas, P., Wacher, C., Falsen, E., Robinson, R. & Collins, M. D. (2001). Lactobacillus cypricasei sp. nov., isolated from Halloumi cheese. Int J Syst Evol Microbiol 51, 45-49.
14. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
15. Nakagawa, Y., Sakane, T., Suzuki, M. & Hatano, K. (2002). Phylogenetic structure of the genera Flexibacter, Flexithrix, and Microscilla deduced from 16S rRNA sequence analysis. J Gen Appl Microbiol 48, 155-165.
16. Naser, S. M., Vancanneyt, M., Hoste, B., Snauwaert, C. & Swings, J. (2006). Lactobacillus cypricasei Lawson et al. 2001 is a later heterotypic synonym of Lactobacillus acidipiscis Tanasupawat et al. 2000. Int J Syst Evol Microbiol 56, 1681-1683.
17. Rambaut, A. (1996). Se-Al: Sequence Alignment Editor version 1.0α1. Distributed by the author. Department of Zoology, University of Oxford, Oxford, UK. http://evolve.zoo.ox.ac.uk/
18. Ramos, M. S. & Harlander, S. K. (1990). DNA fingerprinting of lactococci and streptococci used in dairy fermentations. Appl Microbiol Biotechnol 34, 368-374.
19. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
20. Sato, H., Yanagida, F., Shinohara, T. & Yokotsuka, K. (2000). Restriction fragment length polymorphism analysis of 16S rRNA genes in lactic acid bacteria isolated from red wine. J Biosci Bioeng 90, 335-337.
21. Tanasupawat, S., Shida, O., Okada, S. & Komagata, K. (2000). Lactobacillus acidipiscis sp. nov. and Weissella thailandensis sp. nov., isolated from fermented fish in Thailand. Int J Syst Evol Microbiol 50, 1479-1485.
22. Tanasupawat, S., Thongsanit, J., Okada, S. & Komagata, K. (2002). Lactic acid bacteria isolated from soy sauce mash in Thailand. J Gen Appl Microbiol 48, 201-209.
23. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.