Lactobacillus gigeriorum sp. nov., isolated from chicken crop

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 2, 2012, Pages 330-334

  Cousin, Sylvie ^a   Gulat Okalla, Marie Laure ^a   Motreff, Laurence ^a   Gouyette, Catherine ^a   Bouchier, Christiane ^a   Clermont, Dominique ^a   Bizet, Chantal ^a  

^a INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CROP; GENE SEQUENCE; GENETIC ANALYSIS; LACTOBACILLUS; LACTOBACILLUS GIGERIORUM; METABOLIC CAPACITY; MULTILOCUS SEQUENCE TYPING; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL;

ANIMALS; BACTERIAL TYPING TECHNIQUES; CHAPERONIN 60; CHICKENS; CROP, AVIAN; DNA, BACTERIAL; DNA-DIRECTED RNA POLYMERASES; GENES, RRNA; LACTOBACILLUS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHENYLALANINE-TRNA LIGASE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

BACTERIA (MICROORGANISMS); LACTOBACILLUS; LACTOBACILLUS ACIDOPHILUS; LACTOBACILLUS AMYLOLYTICUS; LACTOBACILLUS INTESTINALIS;

EID: 84856808103     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.028217-0     Document Type: Article

References (25)

1. Bernardet, J. F., Nakagawa, Y., Holmes, B. Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
2. Blaiotta, G., Fusco, V., Ercolini, D., Aponte, M., Pepe, O.& Villani, F. (2008). Lactobacillus strain diversity based on partial hsp60 gene sequences and design of PCR-restriction fragment length polymorphism assays for species identification and differentiation. Appl Environ Microbiol 74, 208-215.
3. Bohak, I., Back, W., Richter, L., Ehrmann, M., Ludwig, W.& Schleifer, K. H. (1998). Lactobacillus amylolyticus sp. nov., isolated from beer malt and beer wort. Syst Appl Microbiol 21, 360-364.
4. Champ, M., Szylit, O., Raibaud, P.& Aŕt-Abdelkader, N. (1983). Amylase production by three Lactobacillus strains isolated from chicken crop. J Appl Bacteriol 55, 487-493.
5. Clermont, D., Diard, S., Bouchier, C., Vivier, C., Bimet, F., Motreff, L., Welker, M., Kallow, W.& Bizet, C. (2009). Microbacterium binotii sp. nov., isolated from human blood. Int J Syst Evol Microbiol 59, 1016-1022.
6. Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797.
7. Felsenstein, J. (1989). PHYLIP-phylogeny inference package (version 3.2). Cladistics 5, 164-166.
8. Fujisawa, T., Shirasaka, S., Watabe, J.& Mitsuoka, T. (1984). Lactobacillus aviarius sp. nov.: a new species isolated from the intestines of chickens. Syst Appl Microbiol 5, 414-420.
9. Fujisawa, T., Itoh, K., Benno, Y.& Mitsuoka, T. (1990). Lactobacillus intestinalis (ex Hemme 1974) sp. nov., nom. rev., isolated from the intestines of mice and rats. Int J Syst Bacteriol 40, 302-304.
10. Fujisawa, T., Benno, Y., Yaeshima, T.& Mitsuoka, T. (1992). Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al. 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981). Int J Syst Bacteriol 42, 487-491.
11. Gouy, M., Guindon, S.& Gascuel, O. (2010). SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27, 221-224.
12. Guindon, S.& Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
13. Hammes, W. P.& Hertel, C. (2009). Genus Lactobacillus. In Bergey's Manual of Systematic Bacteriology, 2nd edn, pp. 465-511. New York: Springer.
14. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S.& other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
15. Mesbah, M., Premachandran, U.& Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Morishita, Y., Mitsuoka, T., Kaneuchi, C., Yamamoto, S.& Ogata, M. (1971). Specific establishment of lactobacilli in the digestive tract of germ-free chickens. Jpn J Microbiol 15, 531-538.
17. Mukai, T., Arihara, K., Ikeda, A., Nomura, K., Suzuki, F.& Ohori, H. (2003). Lactobacillus kitasatonis sp. nov., from chicken intestine. Int J Syst Evol Microbiol 53, 2055-2059.
18. Naser, S. M., Dawyndt, P., Hoste, B., Gevers, D., Vandemeu-lebroecke, K., Cleenwerck, I., Vancanneyt, M.& Swings, J. (2007). Identification of lactobacilli by pheS and rpoA gene sequence analyses. Int J Syst Evol Microbiol 57, 2777-2789.
19. Néron, B., Ménager, H., Maufrais, C., Joly, N., Maupetit, J., Letort, S., Carrere, S., Tuffery, P.& Letondal, C. (2009). Mobyle: a new full web bioinformatics framework. Bioinformatics 25, 3005-3011.
20. Niamsup, P., Sujaya, I. N., Tanaka, M., Sone, T., Hanada, S., Kamagata, Y., Lumyong, S., Assavanig, A., Asano, K.& other authors (2003). Lactobacillus thermotolerans sp. nov., a novel thermotolerant species isolated from chicken faeces. Int J Syst Evol Microbiol 53, 263- 268.
21. Raibaud, P., Galpin, J. V., Ducluzeau, R., Mocquot, G.& Oliver, G. (1973). Le genre dans le tube digestif du rat. I. Caracte'res des souches homofermentaires isolées de rats holo- et gnotoxéniques. Ann Microbiol 124, 83-109 (in French).
22. Sharpe, M. E. (1979). Identification of lactic acid bacteria. In Identification Methods for Microbiologists (Society for Applied Bacteriology. Technical Series no 14). 2nd edn. Edited by F. A. Skinner& D. W. Lovelock. New York: Academic Press.
23. Song, L, James, S. R., Kazim, L.& Karpf, A. R. (2005). Specific method for the determination of genomic DNA methylation by liquid chromatography-electrospray ionization tandem mass spectrometry. Anal Chem 77, 504-510.
24. Stackebrandt, E.& Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846- 849.
25. Yarza, P., Richter, M., Peplies, J., Euzeby, J., Amann, R., Schleifer, K. H., Ludwig, W., Glockner, F. O.& Rossello-Mora, R. (2008). The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31, 241- 250.