-
1
-
-
84906942533
-
Human oral viruses are personal, persistent and gender-consistent
-
Abeles, S. R., Robles-Sikisaka, R., Ly, M., Lum, A. G., Salzman, J., Boehm, T. K., et al. (2014). Human oral viruses are personal, persistent and gender-consistent. ISME J. 8, 1753-1767. doi: 10.1038/ismej.2014.31
-
(2014)
ISME J
, vol.8
, pp. 1753-1767
-
-
Abeles, S.R.1
Robles-Sikisaka, R.2
Ly, M.3
Lum, A.G.4
Salzman, J.5
Boehm, T.K.6
-
2
-
-
36649021589
-
Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples
-
Ahmed, S., Macfarlane, G. T., Fite, A., McBain, A. J., Gilbert, P., and Macfarlane, S. (2007). Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples. Appl. Environ. Microbiol. 73, 7435-7442. doi: 10.1128/AEM.01143-07
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 7435-7442
-
-
Ahmed, S.1
Macfarlane, G.T.2
Fite, A.3
McBain, A.J.4
Gilbert, P.5
Macfarlane, S.6
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410. doi: 10.1016/S0022-2836(05)80360-2
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R. I., Ludwig, W., and Schleifer, K. H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169.
-
(1995)
Microbiol. Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
5
-
-
33751059692
-
The marine viromes of four oceanic regions
-
Angly, F. E., Felts, B., Breitbart, M., Salamon, P., Edwards, R. A., Carlson, C., et al. (2006). The marine viromes of four oceanic regions. PLoS Biol. 4:e368. doi: 10.1371/journal.pbio.0040368
-
(2006)
PLoS Biol
, vol.4
-
-
Angly, F.E.1
Felts, B.2
Breitbart, M.3
Salamon, P.4
Edwards, R.A.5
Carlson, C.6
-
6
-
-
19144363310
-
PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information
-
Angly, F., Rodriguez-Brito, B., Bangor, D., McNairnie, P., Breitbart, M., Salamon, P., et al. (2005). PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. BMC Bioinform. 6:41. doi: 10.1186/1471-2105-6-41
-
(2005)
BMC Bioinform
, vol.6
, pp. 41
-
-
Angly, F.1
Rodriguez-Brito, B.2
Bangor, D.3
McNairnie, P.4
Breitbart, M.5
Salamon, P.6
-
7
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., et al. (2011). Enterotypes of the human gut microbiome. Nature 473, 174-180. doi: 10.1038/nature09944
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
-
8
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
Bäckhed, F., Ley, R. E., Sonnenburg, J. L., Peterson, D. A., and Gordon, J. I. (2005). Host-bacterial mutualism in the human intestine. Science 307, 1915-1920. doi: 10.1126/science.1104816
-
(2005)
Science
, vol.307
, pp. 1915-1920
-
-
Bäckhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
9
-
-
84879515171
-
Bacteriophage adhering to mucus provide a non-host-derived immunity
-
Barr, J. J., Auro, R., Furlan, M., Whiteson, K. L., Erb, M. L., Pogliano, J., et al. (2013a). Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc. Natl. Acad. Sci. U.S.A. 110, 10771-10776. doi: 10.1073/pnas.1305923110
-
(2013)
Proc. Natl. Acad. Sci. U.S.A
, vol.110
, pp. 10771-10776
-
-
Barr, J.J.1
Auro, R.2
Furlan, M.3
Whiteson, K.L.4
Erb, M.L.5
Pogliano, J.6
-
10
-
-
84903592357
-
Innate and acquired bacteriophage-mediated immunity
-
Barr, J. J., Youle, M., and Rohwer, F. (2013b). Innate and acquired bacteriophage-mediated immunity. Bacteriophage 3:e25857. doi: 10.4161/bact.25857
-
(2013)
Bacteriophage
, vol.3
-
-
Barr, J.J.1
Youle, M.2
Rohwer, F.3
-
11
-
-
84894238642
-
Improved bacteriophage genome data is necessary for integrating viral and bacterial ecology
-
Bibby, K. (2014). Improved bacteriophage genome data is necessary for integrating viral and bacterial ecology. Microb. Ecol. 67, 242-244. doi: 10.1007/s00248-013-0325-x
-
(2014)
Microb. Ecol
, vol.67
, pp. 242-244
-
-
Bibby, K.1
-
12
-
-
83655191021
-
Marine viruses, truth or dare
-
Breitbart, M. (2012). Marine viruses, truth or dare. Annu. Rev. Mar. Sci. 4, 425-448. doi: 10.1146/annurev-marine-120709-142805
-
(2012)
Annu. Rev. Mar. Sci
, vol.4
, pp. 425-448
-
-
Breitbart, M.1
-
13
-
-
49349118069
-
Viral diversity and dynamics in an infant gut
-
Breitbart, M., Haynes, M., Kelley, S., Angly, F., Edwards, R. A., Felts, B., et al. (2008). Viral diversity and dynamics in an infant gut. Res. Microbiol. 159, 367-373. doi: 10.1016/j.resmic.2008.04.006
-
(2008)
Res. Microbiol
, vol.159
, pp. 367-373
-
-
Breitbart, M.1
Haynes, M.2
Kelley, S.3
Angly, F.4
Edwards, R.A.5
Felts, B.6
-
14
-
-
0141891348
-
Metagenomic analyses of an uncultured viral community from human feces
-
Breitbart, M., Hewson, I., Felts, B., Mahaffy, J. M., Nulton, J., Salamon, P., et al. (2003). Metagenomic analyses of an uncultured viral community from human feces. J. Bacteriol. 85, 6220-6223. doi: 10.1128/JB.185.20.6220-6223.2003
-
(2003)
J. Bacteriol
, vol.85
, pp. 6220-6223
-
-
Breitbart, M.1
Hewson, I.2
Felts, B.3
Mahaffy, J.M.4
Nulton, J.5
Salamon, P.6
-
15
-
-
3142570537
-
Global distribution of nearly identical phage-encoded DNA sequences
-
Breitbart, M., Miyake, J. H., and Rohwer, F. (2004). Global distribution of nearly identical phage-encoded DNA sequences. FEMS Microbiol. Lett. 236, 249-256. doi: 10.1111/j.1574-6968.2004.tb09654.x
-
(2004)
FEMS Microbiol. Lett
, vol.236
, pp. 249-256
-
-
Breitbart, M.1
Miyake, J.H.2
Rohwer, F.3
-
16
-
-
20344382957
-
Here a virus, there a virus, everywhere the same virus?
-
Breitbart, M., and Rohwer, F. (2005). Here a virus, there a virus, everywhere the same virus? Trends Microbiol. 13, 278-284. doi: 10.1016/j.tim.2005.04.003
-
(2005)
Trends Microbiol
, vol.13
, pp. 278-284
-
-
Breitbart, M.1
Rohwer, F.2
-
17
-
-
84882832884
-
Bacteriophage-host interaction, from splendid isolation into a messy reality
-
Brüssow, H. (2013). Bacteriophage-host interaction, from splendid isolation into a messy reality. Curr. Opin. Microbiol. 16, 500-506. doi: 10.1016/j.mib.2013.04.007
-
(2013)
Curr. Opin. Microbiol
, vol.16
, pp. 500-506
-
-
Brüssow, H.1
-
18
-
-
4544321685
-
Phages and the evolution of bacterial pathogens, from genomic rearrangements to lysogenic conversion
-
Brüssow, H., Canchaya, C., and Hardt, W.-D. (2004). Phages and the evolution of bacterial pathogens, from genomic rearrangements to lysogenic conversion. Microbiol. Mol. Biol. Rev. 68, 560-602. doi: 10.1128/MMBR.68.3.560-602.2004
-
(2004)
Microbiol. Mol. Biol. Rev
, vol.68
, pp. 560-602
-
-
Brüssow, H.1
Canchaya, C.2
Hardt, W.-D.3
-
19
-
-
0037059610
-
Phage genomics, small is beautiful
-
Brüssow, H., and Hendrix, R. W. (2002). Phage genomics, small is beautiful. Cell 108, 13-16. doi: 10.1016/S0092-8674(01)00637-7
-
(2002)
Cell
, vol.108
, pp. 13-16
-
-
Brüssow, H.1
Hendrix, R.W.2
-
20
-
-
0037825641
-
Prophages and bacterial genomics, what have we learned so far?
-
Casjens, S. (2003). Prophages and bacterial genomics, what have we learned so far? Mol. Microbiol. 49, 277-300. doi: 10.1046/j.1365-2958.2003.03580.x
-
(2003)
Mol. Microbiol
, vol.49
, pp. 277-300
-
-
Casjens, S.1
-
21
-
-
2942520975
-
Phage-host interaction, an ecological perspective
-
Chibani-Chennoufi, S., Bruttin, A., Dillmann, M.-L., and Brüssow, H. (2004). Phage-host interaction, an ecological perspective. J. Bacteriol. 186, 3677-3686. doi: 10.1128/JB.186.12.3677-3686.2004
-
(2004)
J. Bacteriol
, vol.186
, pp. 3677-3686
-
-
Chibani-Chennoufi, S.1
Bruttin, A.2
Dillmann, M.-L.3
Brüssow, H.4
-
22
-
-
84858376593
-
The impact of the gut microbiota on human health, an integrative view
-
Clemente, J. C., Ursell, L. K., Parfrey, L. W., and Knight, R. (2012). The impact of the gut microbiota on human health, an integrative view. Cell 148, 1258-1270. doi: 10.1016/j.cell.2012.01.035
-
(2012)
Cell
, vol.148
, pp. 1258-1270
-
-
Clemente, J.C.1
Ursell, L.K.2
Parfrey, L.W.3
Knight, R.4
-
23
-
-
79952306616
-
Antibiotic resistance genes in the bacteriophage DNA fraction of environmental samples
-
Colomer-Lluch, M., Jofre, J., and Muniesa, M. (2011). Antibiotic resistance genes in the bacteriophage DNA fraction of environmental samples. PLoS ONE 6:e17549. doi: 10.1371/journal.pone.0017549
-
(2011)
PLoS ONE
, vol.6
-
-
Colomer-Lluch, M.1
Jofre, J.2
Muniesa, M.3
-
24
-
-
84866546211
-
Mind-altering microorganisms, the impact of the gut microbiota on brain and behaviour
-
Cryan, J. F., and Dinan, T. G. (2012). Mind-altering microorganisms, the impact of the gut microbiota on brain and behaviour. Nat. Rev. Neurosci. 13, 701-712. doi: 10.1038/nrn3346
-
(2012)
Nat. Rev. Neurosci
, vol.13
, pp. 701-712
-
-
Cryan, J.F.1
Dinan, T.G.2
-
25
-
-
84920694495
-
Emerging methods to study bacteriophage infection at the single cell level
-
Dang, V. T., and Sullivan, M. B. (2014). Emerging methods to study bacteriophage infection at the single cell level. Front. Microbiol. 5:724. doi: 10.3389/fmicb.2014.00724
-
(2014)
Front. Microbiol
, vol.5
, pp. 724
-
-
Dang, V.T.1
Sullivan, M.B.2
-
26
-
-
0000077049
-
Sur un microbe invisible antagoniste des bacilles dysentérique
-
d'Herelle, F. (1917). Sur un microbe invisible antagoniste des bacilles dysentérique. C.R. Acad. Sci. Paris 165, 373-375.
-
(1917)
C.R. Acad. Sci. Paris
, vol.165
, pp. 373-375
-
-
d'Herelle, F.1
-
27
-
-
84923685057
-
Elevated levels of circulating DNA in cardiovascular disease patients, metagenomic profiling of microbiome in the circulation
-
Dinakaran, V., Rathinavel, A., Pushpanathan, M., Sivakumar, R., Gunasekaran, P., and Rajendhran, J. (2014). Elevated levels of circulating DNA in cardiovascular disease patients, metagenomic profiling of microbiome in the circulation. PLoS ONE 9:e105221. doi: 10.1371/journal.pone.0105221
-
(2014)
PLoS ONE
, vol.9
-
-
Dinakaran, V.1
Rathinavel, A.2
Pushpanathan, M.3
Sivakumar, R.4
Gunasekaran, P.5
Rajendhran, J.6
-
28
-
-
84867903844
-
A composite bacteriophage alters colonization by an intestinal commensal bacterium
-
Duerkop, B. A., Clements, C. V., Rollins, D., Rodrigues, J. L. M., and Hooper, L. V. (2012). A composite bacteriophage alters colonization by an intestinal commensal bacterium. Proc. Natl. Acad. Sci. U.S.A. 109, 17621-11766. doi: 10.1073/pnas.1206136109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, pp. 17621-17626
-
-
Duerkop, B.A.1
Clements, C.V.2
Rollins, D.3
Rodrigues, J.L.M.4
Hooper, L.V.5
-
29
-
-
84905041075
-
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
-
Dutilh, B. E., Cassman, N., McNair, K., Sanchez, S. E., Silva, G. G. Z., Boling, L., et al. (2014). A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat. Commun. 5, 4498. doi: 10.1038/ncomms5498
-
(2014)
Nat. Commun
, vol.5
, pp. 4498
-
-
Dutilh, B.E.1
Cassman, N.2
McNair, K.3
Sanchez, S.E.4
Silva, G.G.Z.5
Boling, L.6
-
30
-
-
84870829895
-
Reference-independent comparative metagenomics using cross-assembly, crAss
-
Dutilh, B. E., Schmieder, R., Nulton, J., Felts, B., Salamon, P., Edwards, R. A., et al. (2012). Reference-independent comparative metagenomics using cross-assembly, crAss. Bioinformatics 28, 3225-3231. doi: 10.1093/bioinformatics/bts613
-
(2012)
Bioinformatics
, vol.28
, pp. 3225-3231
-
-
Dutilh, B.E.1
Schmieder, R.2
Nulton, J.3
Felts, B.4
Salamon, P.5
Edwards, R.A.6
-
31
-
-
84930613671
-
Bacteriophage and their potential roles in the human oral cavity
-
Edlund, A., Santiago-Rodriguez, T. M., Boehm, T. K., and Pride, D. T. (2015). Bacteriophage and their potential roles in the human oral cavity. J. Oral. Microbiol. 7, 27423. doi: 10.3402/jom.v7.27423
-
(2015)
J. Oral. Microbiol
, vol.7
, pp. 27423
-
-
Edlund, A.1
Santiago-Rodriguez, T.M.2
Boehm, T.K.3
Pride, D.T.4
-
32
-
-
0016170941
-
Diagnostic electron microscopy of faeces. I. The viral flora of the faeces as seen by electron microscopy
-
Flewett, T. H., Bryden, A. S., and Davies, H. (1974). Diagnostic electron microscopy of faeces. I. The viral flora of the faeces as seen by electron microscopy. J. Clin. Pathol. 27, 603-608. doi: 10.1136/jcp.27.8.603
-
(1974)
J. Clin. Pathol
, vol.27
, pp. 603-608
-
-
Flewett, T.H.1
Bryden, A.S.2
Davies, H.3
-
33
-
-
0033542481
-
Marine viruses and their biogeochemical and ecological effects
-
Fuhrman, J. A. (1999). Marine viruses and their biogeochemical and ecological effects. Nature 399, 541-548. doi: 10.1038/21119
-
(1999)
Nature
, vol.399
, pp. 541-548
-
-
Fuhrman, J.A.1
-
34
-
-
0020512991
-
Bacteriophage distribution in human faeces, continuous survey of healthy subjects and patients with internal and leukaemic diseases
-
Furuse, K., Osawa, S., Kawashiro, J., Tanaka, R., Ozawa, A., Sawamura, S., et al. (1983). Bacteriophage distribution in human faeces, continuous survey of healthy subjects and patients with internal and leukaemic diseases. J. Gen. Virol. 64, 2039-2043. doi: 10.1099/0022-1317-64-9-2039
-
(1983)
J. Gen. Virol
, vol.64
, pp. 2039-2043
-
-
Furuse, K.1
Osawa, S.2
Kawashiro, J.3
Tanaka, R.4
Ozawa, A.5
Sawamura, S.6
-
35
-
-
0842269921
-
New insights into the possible role of bacteriophages in host defense and disease
-
Gorski, A., Dabrowska, K., Switala-Jelen, K., Nowaczyk, M., Weber-Dabrowska, B., Boratynski, J., et al. (2003). New insights into the possible role of bacteriophages in host defense and disease. Med. Immunol. 2, 2. doi: 10.1186/1476-9433-2-2
-
(2003)
Med. Immunol
, vol.2
, pp. 2
-
-
Gorski, A.1
Dabrowska, K.2
Switala-Jelen, K.3
Nowaczyk, M.4
Weber-Dabrowska, B.5
Boratynski, J.6
-
36
-
-
51649104135
-
Genome sequence of the Bacteroides fragilis phage ATCC 51477-B1
-
Hawkins, S. A., Layton, A. C., Ripp, S., Williams, D., and Sayler, G. S. (2008). Genome sequence of the Bacteroides fragilis phage ATCC 51477-B1. Virol. J. 5, 97. doi: 10.1186/1743-422X-5-97
-
(2008)
Virol. J
, vol.5
, pp. 97
-
-
Hawkins, S.A.1
Layton, A.C.2
Ripp, S.3
Williams, D.4
Sayler, G.S.5
-
37
-
-
0035843993
-
Commensal host-bacterial relationships in the gut
-
Hooper, L. V., and Gordon, J. I. (2001). Commensal host-bacterial relationships in the gut. Science 292, 1115-1118. doi: 10.1126/science.1058709
-
(2001)
Science
, vol.292
, pp. 1115-1118
-
-
Hooper, L.V.1
Gordon, J.I.2
-
38
-
-
77649086402
-
Immune adaptations that maintain homeostasis with the intestinal microbiota
-
Hooper, L. V., and Macpherson, A. J. (2010). Immune adaptations that maintain homeostasis with the intestinal microbiota. Nat. Rev. Immunol. 10, 159-169. doi: 10.1038/nri2710
-
(2010)
Nat. Rev. Immunol
, vol.10
, pp. 159-169
-
-
Hooper, L.V.1
Macpherson, A.J.2
-
39
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
Huttenhower, C., Gevers, D., Knight, R., Abubucker, S., Badger, J. H., Chinwalla, A. T., et al. (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214. doi: 10.1038/nature11234
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
Huttenhower, C.1
Gevers, D.2
Knight, R.3
Abubucker, S.4
Badger, J.H.5
Chinwalla, A.T.6
-
40
-
-
79251559429
-
The human gut mobile metagenome, a metazoan perspective
-
Jones, B. V. (2010). The human gut mobile metagenome, a metazoan perspective. Gut Microbes 1, 415-431. doi: 10.4161/gmic.1.6.14087
-
(2010)
Gut Microbes
, vol.1
, pp. 415-431
-
-
Jones, B.V.1
-
41
-
-
35348835922
-
Accessing the mobile metagenome of the human gut microbiota
-
Jones, B. V., and Marchesi, J. R. (2007). Accessing the mobile metagenome of the human gut microbiota. Mol. Biosyst. 3, 749-758. doi: 10.1039/b705657e
-
(2007)
Mol. Biosyst
, vol.3
, pp. 749-758
-
-
Jones, B.V.1
Marchesi, J.R.2
-
42
-
-
83055177100
-
Diversity and abundance of single-stranded DNA viruses in human feces
-
Kim, M.-S., Park, E.-J., Roh, S. W., and Bae, J.-W. (2011). Diversity and abundance of single-stranded DNA viruses in human feces. Appl. Environ. Microbiol. 77, 8062-8070. doi: 10.1128/AEM.06331-11
-
(2011)
Appl. Environ. Microbiol
, vol.77
, pp. 8062-8070
-
-
Kim, M.-S.1
Park, E.-J.2
Roh, S.W.3
Bae, J.-W.4
-
43
-
-
84927693101
-
Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities
-
Koskella, B., and Brockhurst, M. A. (2014). Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities. FEMS Microbiol. Rev. 38, 916-931. doi: 10.1111/1574-6976.12072
-
(2014)
FEMS Microbiol. Rev
, vol.38
, pp. 916-931
-
-
Koskella, B.1
Brockhurst, M.A.2
-
44
-
-
84876237691
-
Exploring host-microbiota interactions in animal models and humans
-
Kostic, A. D., Howitt, M. R., and Garrett, W. S. (2013). Exploring host-microbiota interactions in animal models and humans. Genes Dev. 27, 701-718. doi: 10.1101/gad.212522.112
-
(2013)
Genes Dev
, vol.27
, pp. 701-718
-
-
Kostic, A.D.1
Howitt, M.R.2
Garrett, W.S.3
-
45
-
-
39649093188
-
Dysbiosis in inflammatory bowel disease, a role for bacteriophages?
-
Lepage, P., Colombet, J., Marteau, P., Sime-Ngando, T., Doré, J., and Leclerc, M. (2008). Dysbiosis in inflammatory bowel disease, a role for bacteriophages? Gut 57, 424-425. doi: 10.1136/gut.2007.134668
-
(2008)
Gut
, vol.57
, pp. 424-425
-
-
Lepage, P.1
Colombet, J.2
Marteau, P.3
Sime-Ngando, T.4
Doré, J.5
Leclerc, M.6
-
46
-
-
66849124585
-
The bacteriophages in human-and animal body-associated microbial communities
-
Letarov, A., and Kulikov, E. (2009). The bacteriophages in human-and animal body-associated microbial communities. J. Appl. Microbiol. 107, 1-13. doi: 10.1111/j.1365-2672.2009.04143.x
-
(2009)
J. Appl. Microbiol
, vol.107
, pp. 1-13
-
-
Letarov, A.1
Kulikov, E.2
-
47
-
-
32944466887
-
Ecological and evolutionary forces shaping microbial diversity in the human intestine
-
Ley, R. E., Peterson, D. A., and Gordon, J. I. (2006). Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124, 837-848. doi: 10.1016/j.cell.2006.02.017
-
(2006)
Cell
, vol.124
, pp. 837-848
-
-
Ley, R.E.1
Peterson, D.A.2
Gordon, J.I.3
-
48
-
-
0032879213
-
Plasmid transfer in the animal intestine and other dynamic bacterial populations, the role of community structure and environment
-
Licht, T. R., Christensen, B. B., Krogfelt, K. A., and Molin, S. (1999). Plasmid transfer in the animal intestine and other dynamic bacterial populations, the role of community structure and environment. Microbiology 145, 2615-2622.
-
(1999)
Microbiology
, vol.145
, pp. 2615-2622
-
-
Licht, T.R.1
Christensen, B.B.2
Krogfelt, K.A.3
Molin, S.4
-
49
-
-
33644916136
-
Conjugative gene transfer in the gastrointestinal environment
-
Licht, T. R., and Wilcks, A. (2005). Conjugative gene transfer in the gastrointestinal environment. Adv. Appl. Microbiol. 58C, 77-95. doi: 10.1016/S0065-2164(05)58002-X
-
(2005)
Adv. Appl. Microbiol
, vol.58C
, pp. 77-95
-
-
Licht, T.R.1
Wilcks, A.2
-
50
-
-
84904999639
-
Bacteria, phages and pigs, the effects of in-feed antibiotics on the microbiome at different gut locations
-
Looft, T., Allen, H. K., Cantarel, B. L., Levine, U. Y., Bayles, D. O., Alt, D. P., et al. (2014). Bacteria, phages and pigs, the effects of in-feed antibiotics on the microbiome at different gut locations. ISME J. 8, 1566-1576. doi: 10.1038/ismej.2014.12
-
(2014)
ISME J
, vol.8
, pp. 1566-1576
-
-
Looft, T.1
Allen, H.K.2
Cantarel, B.L.3
Levine, U.Y.4
Bayles, D.O.5
Alt, D.P.6
-
51
-
-
84905057679
-
Bacteriophages as a reservoir of extended-spectrum β-lactamase and fluoroquinolone resistance genes in the environment
-
Marti, E., Variatza, E., and Balcázar, J. L. (2014). Bacteriophages as a reservoir of extended-spectrum β-lactamase and fluoroquinolone resistance genes in the environment. Clin. Microbiol. Infect. Dis. 20, O456-O459. doi: 10.1111/1469-0691.12446
-
(2014)
Clin. Microbiol. Infect. Dis
, vol.20
, pp. O456-O459
-
-
Marti, E.1
Variatza, E.2
Balcázar, J.L.3
-
52
-
-
44449106055
-
A microbial symbiosis factor prevents intestinal inflammatory disease
-
Mazmanian, S. K., Round, J. L., and Kasper, D. L. (2008). A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453, 620-625. doi: 10.1038/nature07008
-
(2008)
Nature
, vol.453
, pp. 620-625
-
-
Mazmanian, S.K.1
Round, J.L.2
Kasper, D.L.3
-
53
-
-
77952958875
-
Mining metagenomic data for novel domains, BACON, a new carbohydrate-binding module
-
Mello, L. V., Chen, X., and Rigden, D. J. (2010). Mining metagenomic data for novel domains, BACON, a new carbohydrate-binding module. FEBS Lett. 584, 2421-2426. doi: 10.1016/j.febslet.2010.04.045
-
(2010)
FEBS Lett
, vol.584
, pp. 2421-2426
-
-
Mello, L.V.1
Chen, X.2
Rigden, D.J.3
-
54
-
-
84880652104
-
Rapid evolution of the human gut virome
-
Minot, S., Bryson, A., Chehoud, C., Wu, G. D., Lewis, J. D., and Bushman, F. D. (2013). Rapid evolution of the human gut virome. Proc. Natl. Acad. Sci. U.S.A. 110, 12450-12455. doi: 10.1073/pnas.1300833110
-
(2013)
Proc. Natl. Acad. Sci. U.S.A
, vol.110
, pp. 12450-12455
-
-
Minot, S.1
Bryson, A.2
Chehoud, C.3
Wu, G.D.4
Lewis, J.D.5
Bushman, F.D.6
-
55
-
-
80053528043
-
The human gut virome, inter-individual variation and dynamic response to diet
-
Minot, S., Sinha, R., Chen, J., Li, H., Keilbaugh, S. A., Wu, G. D., et al. (2011). The human gut virome, inter-individual variation and dynamic response to diet. Genome Res. 21, 1616-1625. doi: 10.1101/gr.122705.111
-
(2011)
Genome Res
, vol.21
, pp. 1616-1625
-
-
Minot, S.1
Sinha, R.2
Chen, J.3
Li, H.4
Keilbaugh, S.A.5
Wu, G.D.6
-
56
-
-
84865013146
-
Conservation of gene cassettes among diverse viruses of the human gut
-
Minot, S., Wu, G. D., Lewis, J. D., and Bushman, F. D. (2012a). Conservation of gene cassettes among diverse viruses of the human gut. PLoS ONE 7:e42342. doi: 10.1371/journal.pone.0042342
-
(2012)
PLoS ONE
, vol.7
-
-
Minot, S.1
Wu, G.D.2
Lewis, J.D.3
Bushman, F.D.4
-
57
-
-
84863393452
-
Hypervariable loci in the human gut virome
-
Minot, S., Grunberg, S., Wu, G. D., Lewis, J. D., and Bushman, F. D. (2012b). Hypervariable loci in the human gut virome. Proc. Natl. Acad. Sci. U.S.A. 109, 3962-3966. doi: 10.1073/pnas.1119061109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, pp. 3962-3966
-
-
Minot, S.1
Grunberg, S.2
Wu, G.D.3
Lewis, J.D.4
Bushman, F.D.5
-
58
-
-
84880509968
-
Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome
-
Modi, S. R., Lee, H. H., Spina, C. S., and Collins, J. J. (2013). Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome. Nature 499, 219-222. doi: 10.1038/nature12212
-
(2013)
Nature
, vol.499
, pp. 219-222
-
-
Modi, S.R.1
Lee, H.H.2
Spina, C.S.3
Collins, J.J.4
-
59
-
-
84906699923
-
Identifying and analyzing bacteriophages in human fecal samples, what could we discover?
-
Muniesa, M., and Jofre, J. (2014). Identifying and analyzing bacteriophages in human fecal samples, what could we discover? Future Microbiol. 9, 879-886. doi: 10.2217/fmb.14.47
-
(2014)
Future Microbiol
, vol.9
, pp. 879-886
-
-
Muniesa, M.1
Jofre, J.2
-
60
-
-
84922245262
-
Disease-specific alterations in the enteric virome in inflammatory bowel disease
-
Norman, J. M., Handley, S. A., Baldridge, M. T., Droit, L., Liu, C. Y., Keller, B. C., et al. (2015). Disease-specific alterations in the enteric virome in inflammatory bowel disease. Cell 160, 447-460. doi: 10.1016/j.cell.2015.01.002
-
(2015)
Cell
, vol.160
, pp. 447-460
-
-
Norman, J.M.1
Handley, S.A.2
Baldridge, M.T.3
Droit, L.4
Liu, C.Y.5
Keller, B.C.6
-
61
-
-
84884239907
-
Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences
-
Ogilvie, L. A., Bowler, L. D., Caplin, J., Dedi, C., Diston, D., Cheek, E., et al. (2013). Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences. Nat. Commun. 4, 2420. doi: 10.1038/ncomms3420
-
(2013)
Nat. Commun
, vol.4
, pp. 2420
-
-
Ogilvie, L.A.1
Bowler, L.D.2
Caplin, J.3
Dedi, C.4
Diston, D.5
Cheek, E.6
-
62
-
-
84865094411
-
Comparative (meta) genomic analysis and ecological profiling of human gut-specific bacteriophage fB124-14
-
Ogilvie, L. A., Caplin, J., Dedi, C., Diston, D., Cheek, E., Bowler, L., et al. (2012a). Comparative (meta) genomic analysis and ecological profiling of human gut-specific bacteriophage fB124-14. PLoS ONE 7:e35053. doi: 10.1371/journal.pone.0035053
-
(2012)
PLoS ONE
, vol.7
-
-
Ogilvie, L.A.1
Caplin, J.2
Dedi, C.3
Diston, D.4
Cheek, E.5
Bowler, L.6
-
63
-
-
84858139933
-
Evolutionary, ecological and biotechnological perspectives on plasmids resident in the human gut mobile metagenome
-
Ogilvie, L. A., Firouzmand, S., and Jones, B. V. (2012b). Evolutionary, ecological and biotechnological perspectives on plasmids resident in the human gut mobile metagenome. Bioeng. Bugs 3, 13-31. doi: 10.4161/bbug.3.1.17883
-
(2012)
Bioeng. Bugs
, vol.3
, pp. 13-31
-
-
Ogilvie, L.A.1
Firouzmand, S.2
Jones, B.V.3
-
65
-
-
84946742208
-
'The human gut mobile metagenome, a metazoan perspective,'
-
ed. S. Highlander (New York: Springer Science & Business Media)
-
Ogilvie, L. A., and Jones, B. V. (2013). "The human gut mobile metagenome, a metazoan perspective," in Encyclopedia of Metagenomics, ed. S. Highlander (New York: Springer Science & Business Media), 1-14.
-
(2013)
Encyclopedia of Metagenomics
, pp. 1-14
-
-
Ogilvie, L.A.1
Jones, B.V.2
-
66
-
-
33745594044
-
The gut flora as a forgotten organ
-
O'Hara, A. M., and Shanahan, F. (2006). The gut flora as a forgotten organ. EMBO Rep. 7, 688-693. doi: 10.1038/sj.embor.7400731
-
(2006)
EMBO Rep
, vol.7
, pp. 688-693
-
-
O'Hara, A.M.1
Shanahan, F.2
-
67
-
-
84926189914
-
Crosstalk at the mucosal border, importance of the gut microenvironment in IBS
-
Ohman, L., Törnblom, H., and Simrén, M. (2015). Crosstalk at the mucosal border, importance of the gut microenvironment in IBS. Nat. Rev. Gastroenterol. Hepatol. 12, 36-49. doi: 10.1038/nrgastro.2014.200
-
(2015)
Nat. Rev. Gastroenterol. Hepatol
, vol.12
, pp. 36-49
-
-
Ohman, L.1
Törnblom, H.2
Simrén, M.3
-
68
-
-
77949423965
-
Antagonistic coevolution accelerates molecular evolution
-
Paterson, S., Vogwill, T., Buckling, A., Benmayor, R., Spiers, A. J., Thomson, N. R., et al. (2010). Antagonistic coevolution accelerates molecular evolution. Nature 464, 275-278. doi: 10.1038/nature08798
-
(2010)
Nature
, vol.464
, pp. 275-278
-
-
Paterson, S.1
Vogwill, T.2
Buckling, A.3
Benmayor, R.4
Spiers, A.J.5
Thomson, N.R.6
-
69
-
-
84879909112
-
Study of the viral and microbial communities associated with Crohn's disease, a metagenomic approach
-
Pérez-Brocal, V., García-López, R., Vázquez-Castellanos, J. F., Nos, P., Beltrán, B., Latorre, A., et al. (2013). Study of the viral and microbial communities associated with Crohn's disease, a metagenomic approach. Clin. Transl. Gastroenterol. 4:e36. doi: 10.1038/ctg.2013.9
-
(2013)
Clin. Transl. Gastroenterol
, vol.4
-
-
Pérez-Brocal, V.1
García-López, R.2
Vázquez-Castellanos, J.F.3
Nos, P.4
Beltrán, B.5
Latorre, A.6
-
70
-
-
0037315735
-
Evolutionary implications of microbial genome tetranucleotide frequency biases
-
Pride, D. T., Meinersmann, R. J., Wassenaar, T. M., and Blaser, M. J. (2003). Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res. 13, 145-158. doi: 10.1101/gr.335003
-
(2003)
Genome Res
, vol.13
, pp. 145-158
-
-
Pride, D.T.1
Meinersmann, R.J.2
Wassenaar, T.M.3
Blaser, M.J.4
-
71
-
-
84859885188
-
Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome
-
Pride, D. T., Salzman, J., Haynes, M., Rohwer, F., Davis-Long, C., White, R. A. III, et al. (2012). Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. ISME J. 6, 915-926. doi: 10.1038/ismej.2011.169
-
(2012)
ISME J
, vol.6
, pp. 915-926
-
-
Pride, D.T.1
Salzman, J.2
Haynes, M.3
Rohwer, F.4
Davis-Long, C.5
White, R.A.6
-
72
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., et al. (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59-65. doi: 10.1038/nature08821
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
-
73
-
-
84927692256
-
The first 1000 cultured species of the human gastrointestinal microbiota
-
Rajilic-Stojanovic, M., and de Vos, W. M. (2014). The first 1000 cultured species of the human gastrointestinal microbiota. FEMS Microbiol. Rev. 38, 996-1047. doi: 10.1111/1574-6976.12075
-
(2014)
FEMS Microbiol. Rev
, vol.38
, pp. 996-1047
-
-
Rajilic-Stojanovic, M.1
de Vos, W.M.2
-
74
-
-
3242664636
-
Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis
-
Rakoff-Nahoum, S., Paglino, J., Eslami-Varzaneh, F., Edberg, S., and Medzhitov, R. (2004). Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis. Cell 118, 229-241. doi: 10.1016/j.cell.2004.07.002
-
(2004)
Cell
, vol.118
, pp. 229-241
-
-
Rakoff-Nahoum, S.1
Paglino, J.2
Eslami-Varzaneh, F.3
Edberg, S.4
Medzhitov, R.5
-
75
-
-
0242523909
-
The uncultured microbial majority
-
Rappé, M. S., and Giovannoni, S. J. (2003). The uncultured microbial majority. Annu. Rev. Microbiol. 57, 369-394. doi: 10.1146/annurev.micro.57.030502.090759
-
(2003)
Annu. Rev. Microbiol
, vol.57
, pp. 369-394
-
-
Rappé, M.S.1
Giovannoni, S.J.2
-
76
-
-
77954627922
-
Viruses in the faecal microbiota of monozygotic twins and their mothers
-
Reyes, A., Haynes, M., Hanson, N., Angly, F. E., Heath, A. C., Rohwer, F., et al. (2010). Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 466, 334-338. doi: 10.1038/nature09199
-
(2010)
Nature
, vol.466
, pp. 334-338
-
-
Reyes, A.1
Haynes, M.2
Hanson, N.3
Angly, F.E.4
Heath, A.C.5
Rohwer, F.6
-
77
-
-
84865169911
-
Going viral, next-generation sequencing applied to phage populations in the human gut
-
Reyes, A., Semenkovich, N. P., Whiteson, K., Rohwer, F., and Gordon, J. I. (2012). Going viral, next-generation sequencing applied to phage populations in the human gut. Nat. Rev. Microbiol. 10, 607-617. doi: 10.1038/nrmicro2853
-
(2012)
Nat. Rev. Microbiol
, vol.10
, pp. 607-617
-
-
Reyes, A.1
Semenkovich, N.P.2
Whiteson, K.3
Rohwer, F.4
Gordon, J.I.5
-
78
-
-
84890281518
-
Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
-
Reyes, A., Wu, M., McNulty, N. P., Rohwer, F. L., and Gordon, J. I. (2013). Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut. Proc. Natl. Acad. Sci. U.S.A. 110, 20236-20241. doi: 10.1073/pnas.1319470110
-
(2013)
Proc. Natl. Acad. Sci. U.S.A
, vol.110
, pp. 20236-20241
-
-
Reyes, A.1
Wu, M.2
McNulty, N.P.3
Rohwer, F.L.4
Gordon, J.I.5
-
79
-
-
66149151286
-
Viruses manipulate the marine environment
-
Rohwer, F., and Thurber, R. V. (2009). Viruses manipulate the marine environment. Nature 459, 207-212. doi: 10.1038/nature08060
-
(2009)
Nature
, vol.459
, pp. 207-212
-
-
Rohwer, F.1
Thurber, R.V.2
-
80
-
-
84899552918
-
Metavir 2, new tools for viral metagenome comparison and assembled virome analysis
-
Roux, S., Tournayre, J., Mahul, A., Debroas, D., and Enault, F. (2014). Metavir 2, new tools for viral metagenome comparison and assembled virome analysis. BMC Bioinform. 15:76. doi: 10.1186/1471-2105-15-76
-
(2014)
BMC Bioinform
, vol.15
, pp. 76
-
-
Roux, S.1
Tournayre, J.2
Mahul, A.3
Debroas, D.4
Enault, F.5
-
81
-
-
8144228665
-
Movement of viruses between biomes
-
Sano, E., Carlson, S., Wegley, L., and Rohwer, F. (2004). Movement of viruses between biomes. Appl. Environ. Microbiol. 70, 5842-5846. doi: 10.1128/AEM.70.10.5842-5846.2004
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 5842-5846
-
-
Sano, E.1
Carlson, S.2
Wegley, L.3
Rohwer, F.4
-
82
-
-
84866069326
-
Artificial neural networks trained to detect viral and phage structural proteins
-
Seguritan, V., Alves, N., Arnoult, M., Raymond, A., Lorimer, D., Burgin, A. B., et al. (2012). Artificial neural networks trained to detect viral and phage structural proteins. PLoS Comput. Biol. 8:e1002657. doi: 10.1371/journal.pcbi.1002657
-
(2012)
PLoS Comput. Biol
, vol.8
-
-
Seguritan, V.1
Alves, N.2
Arnoult, M.3
Raymond, A.4
Lorimer, D.5
Burgin, A.B.6
-
83
-
-
83055186603
-
Ecology drives a global network of gene exchange connecting the human microbiome
-
Smillie, C. S., Smith, M. B., Friedman, J., Cordero, O. X., David, L. A., and Alm, E. J. (2011). Ecology drives a global network of gene exchange connecting the human microbiome. Nature 480, 241-244. doi: 10.1038/nature10571
-
(2011)
Nature
, vol.480
, pp. 241-244
-
-
Smillie, C.S.1
Smith, M.B.2
Friedman, J.3
Cordero, O.X.4
David, L.A.5
Alm, E.J.6
-
84
-
-
79551571717
-
Microbial dysbiosis in colorectal cancer (CRC) patients
-
Sobhani, I., Tap, J., Roudot-Thoraval, F., Roperch, J. P., Letulle, S., Langella, P., et al. (2011). Microbial dysbiosis in colorectal cancer (CRC) patients. PLoS ONE 6:e16393. doi: 10.1371/journal.pone.0016393
-
(2011)
PLoS ONE
, vol.6
-
-
Sobhani, I.1
Tap, J.2
Roudot-Thoraval, F.3
Roperch, J.P.4
Letulle, S.5
Langella, P.6
-
85
-
-
55949124035
-
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
-
Sokol, H., Pigneur, B., Watterlot, L., Lakhdari, O., Bermúdez-Humarán, L. G., Gratadoux, J.-J., et al. (2008). Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc. Natl. Acad. Sci. U.S.A. 105, 16731-16736. doi: 10.1073/pnas.0804812105
-
(2008)
Proc. Natl. Acad. Sci. U.S.A
, vol.105
, pp. 16731-16736
-
-
Sokol, H.1
Pigneur, B.2
Watterlot, L.3
Lakhdari, O.4
Bermúdez-Humarán, L.G.5
Gratadoux, J.-J.6
-
86
-
-
39149142575
-
CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea
-
Sorek, R., Kunin, V., and Hugenholtz, P. (2008). CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat. Rev. Microbiol. 6, 181-186. doi: 10.1038/nrmicro1793
-
(2008)
Nat. Rev. Microbiol
, vol.6
, pp. 181-186
-
-
Sorek, R.1
Kunin, V.2
Hugenholtz, P.3
-
87
-
-
84865169354
-
CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome
-
Stern, A., Mick, E., Tirosh, I., Sagy, O., and Sorek, R. (2012). CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome. Genome Res. 22, 1985-1994. doi: 10.1101/gr.138297.112
-
(2012)
Genome Res
, vol.22
, pp. 1985-1994
-
-
Stern, A.1
Mick, E.2
Tirosh, I.3
Sagy, O.4
Sorek, R.5
-
88
-
-
0032755259
-
Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
-
Suau, A., Bonnet, R., Sutren, M., Godon, J. J., Gibson, G. R., Collins, M. D., et al. (1999). Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl. Environ. Microbiol. 65, 4799-4807.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 4799-4807
-
-
Suau, A.1
Bonnet, R.2
Sutren, M.3
Godon, J.J.4
Gibson, G.R.5
Collins, M.D.6
-
89
-
-
25144506135
-
Viruses in the sea
-
Suttle, C. A. (2005a). Viruses in the sea. Nature 437, 356-361. doi: 10.1038/nature04160
-
(2005)
Nature
, vol.437
, pp. 356-361
-
-
Suttle, C.A.1
-
90
-
-
23944494203
-
Crystal ball. The viriosphere, the greatest biological diversity on Earth and driver of global processes
-
Suttle, C. A. (2005b). Crystal ball. The viriosphere, the greatest biological diversity on Earth and driver of global processes. Environ. Microbiol. 7, 481-482. doi: 10.1111/j.1462-2920.2005.803_11.x
-
(2005)
Environ. Microbiol
, vol.7
, pp. 481-482
-
-
Suttle, C.A.1
-
91
-
-
34548792911
-
Marine viruses-major players in the global ecosystem
-
Suttle, C. A. (2007). Marine viruses-major players in the global ecosystem. Nat. Rev. Microbiol. 5, 801-812. doi: 10.1038/nrmicro1750
-
(2007)
Nat. Rev. Microbiol
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
92
-
-
13244253777
-
TETRA, a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences
-
Teeling, H., Waldmann, J., Lombardot, T., Bauer, M., and Glöckner, F. O. (2004). TETRA, a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences. BMC Bioinform. 5:163. doi: 10.1186/1471-2105-5-163
-
(2004)
BMC Bioinform
, vol.5
, pp. 163
-
-
Teeling, H.1
Waldmann, J.2
Lombardot, T.3
Bauer, M.4
Glöckner, F.O.5
-
93
-
-
60549094505
-
'Aquatic Phage Ecology,'
-
ed. S. T. Abedon (Cambridge: Cambridge University Press)
-
Thingstad, T. F., Bratbak, G., and Heldal, M. (2008). "Aquatic Phage Ecology," in Bacteriophage Ecology, Population Growth, Evolution, and Impact of Bacterial Viruses, ed. S. T. Abedon (Cambridge: Cambridge University Press), 251-280. doi: 10.1017/CBO9780511541483.013
-
(2008)
Bacteriophage Ecology, Population Growth, Evolution, and Impact of Bacterial Viruses
, pp. 251-280
-
-
Thingstad, T.F.1
Bratbak, G.2
Heldal, M.3
-
94
-
-
64749109065
-
Laboratory procedures to generate viral metagenomes
-
Thurber, R. V., Haynes, M., Breitbart, M., Wegley, L., and Rohwer, F. (2009). Laboratory procedures to generate viral metagenomes. Nat. Protoc. 4, 470-483. doi: 10.1038/nprot.2009.10
-
(2009)
Nat. Protoc
, vol.4
, pp. 470-483
-
-
Thurber, R.V.1
Haynes, M.2
Breitbart, M.3
Wegley, L.4
Rohwer, F.5
-
95
-
-
50749121524
-
An investigation on the nature of ultra-microscopic viruses
-
Twort, F. W. (1915). An investigation on the nature of ultra-microscopic viruses. Lancet 186, 1241-1243. doi: 10.1016/S0140-6736(01)20383-3
-
(1915)
Lancet
, vol.186
, pp. 1241-1243
-
-
Twort, F.W.1
-
96
-
-
84884563236
-
Bacteriophages in gut samples from pediatric Crohn's disease patients, metagenomic analysis using 454 pyrosequencing
-
Wagner, J., Maksimovic, J., Farries, G., Sim, W. H., Bishop, R. F., Cameron, D. J., et al. (2013). Bacteriophages in gut samples from pediatric Crohn's disease patients, metagenomic analysis using 454 pyrosequencing. Inflamm. Bowel. Dis. 19, 1598-1608.
-
(2013)
Inflamm. Bowel. Dis
, vol.19
, pp. 1598-1608
-
-
Wagner, J.1
Maksimovic, J.2
Farries, G.3
Sim, W.H.4
Bishop, R.F.5
Cameron, D.J.6
-
97
-
-
84855923925
-
Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers
-
Wang, T., Cai, G., Qiu, Y., Fei, N., Zhang, M., Pang, X., et al. (2012). Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers. ISME J. 6, 320-329. doi: 10.1038/ismej.2011.109
-
(2012)
ISME J
, vol.6
, pp. 320-329
-
-
Wang, T.1
Cai, G.2
Qiu, Y.3
Fei, N.4
Zhang, M.5
Pang, X.6
-
98
-
-
79251573217
-
Cryptic prophages help bacteria cope with adverse environments
-
Wang, X., Kim, Y., Ma, Q., Hong, S. H., Pokusaeva, K., Sturino, J. M., et al. (2010). Cryptic prophages help bacteria cope with adverse environments. Nat. Commun. 1, 147. doi: 10.1038/ncomms1146
-
(2010)
Nat. Commun
, vol.1
, pp. 147
-
-
Wang, X.1
Kim, Y.2
Ma, Q.3
Hong, S.H.4
Pokusaeva, K.5
Sturino, J.M.6
-
99
-
-
1942486000
-
Ecology of prokaryotic viruses
-
Weinbauer, M. G. (2004). Ecology of prokaryotic viruses. FEMS Microbiol. Rev. 28, 127-181. doi: 10.1016/j.femsre.2003.08.001
-
(2004)
FEMS Microbiol. Rev
, vol.28
, pp. 127-181
-
-
Weinbauer, M.G.1
-
100
-
-
35448985445
-
Bacteroides, the good, the bad, and the nitty-gritty
-
Wexler, H. M. (2007). Bacteroides, the good, the bad, and the nitty-gritty. Clin. Microbiol. Rev. 20, 593-621. doi: 10.1128/CMR.00008-07
-
(2007)
Clin. Microbiol. Rev
, vol.20
, pp. 593-621
-
-
Wexler, H.M.1
-
101
-
-
0032499758
-
Prokaryotes, the unseen majority
-
Whitman, W. B., Coleman, D. C., and Wiebe, W. J. (1998). Prokaryotes, the unseen majority. Proc. Natl. Acad. Sci. U.S.A. 95, 6578-6583. doi: 10.1073/pnas.95.12.6578
-
(1998)
Proc. Natl. Acad. Sci. U.S.A
, vol.95
, pp. 6578-6583
-
-
Whitman, W.B.1
Coleman, D.C.2
Wiebe, W.J.3
-
102
-
-
84865205784
-
VIROME, a standard operating procedure for analysis of viral metagenome sequences
-
Wommack, K. E., Bhavsar, J., Polson, S. W., Chen, J., Dumas, M., Srinivasiah, S., et al. (2012). VIROME, a standard operating procedure for analysis of viral metagenome sequences. Stand. Genomic Sci. 6, 427-439. doi: 10.4056/sigs.2945050
-
(2012)
Stand. Genomic Sci
, vol.6
, pp. 427-439
-
-
Wommack, K.E.1
Bhavsar, J.2
Polson, S.W.3
Chen, J.4
Dumas, M.5
Srinivasiah, S.6
-
103
-
-
0034053843
-
Virioplankton, viruses in aquatic ecosystems
-
Wommack, K. E., and Colwell, R. R. (2000). Virioplankton, viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64, 69-114. doi: 10.1128/MMBR.64.1.69-114.2000
-
(2000)
Microbiol. Mol. Biol. Rev
, vol.64
, pp. 69-114
-
-
Wommack, K.E.1
Colwell, R.R.2
-
104
-
-
0032931852
-
Hybridization analysis of chesapeake bay virioplankton
-
Wommack, K. E., Ravel, J., Hill, R. T., and Colwell, R. R. (1999). Hybridization analysis of chesapeake bay virioplankton. Appl. Environ. Microbiol. 65, 241-250.
-
(1999)
Appl. Environ. Microbiol
, vol.65
, pp. 241-250
-
-
Wommack, K.E.1
Ravel, J.2
Hill, R.T.3
Colwell, R.R.4
-
105
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., et al. (2011). Linking long-term dietary patterns with gut microbial enterotypes. Science 334, 105-108. doi: 10.1126/science.1208344
-
(2011)
Science
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.-Y.5
Keilbaugh, S.A.6
-
106
-
-
31144459030
-
RNA viral community in human feces: prevalence of plant pathogenic viruses
-
Zhang, T., Breitbart, M., Lee, W. H., Run, J.-Q., Wei, C. L., Soh, S. W., et al. (2006). RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol. 4:e3. doi: 10.1371/journal.pbio.0040003
-
(2006)
PLoS Biol
, vol.4
-
-
Zhang, T.1
Breitbart, M.2
Lee, W.H.3
Run, J.-Q.4
Wei, C.L.5
Soh, S.W.6
-
107
-
-
84899452861
-
Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota
-
Zhang, Z., Geng, J., Tang, X., Fan, H., Xu, J., Wen, X., et al. (2014). Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota. ISME J. 8, 881-893. doi: 10.1038/ismej.2013.185
-
(2014)
ISME J
, vol.8
, pp. 881-893
-
-
Zhang, Z.1
Geng, J.2
Tang, X.3
Fan, H.4
Xu, J.5
Wen, X.6
-
108
-
-
33645471793
-
A microbial world within us
-
Zoetendal, E. G., Vaughan, E. E., and de Vos, W. M. (2006). A microbial world within us. Mol. Microbiol. 59, 1639-1650.
-
(2006)
Mol. Microbiol
, vol.59
, pp. 1639-1650
-
-
Zoetendal, E.G.1
Vaughan, E.E.2
de Vos, W.M.3
|