메뉴 건너뛰기




Volumn 6, Issue SEP, 2015, Pages

The human gut virome: A multifaceted majority

Author keywords

Bacteriophage; Dysbiosis; Human gut microbiome; Metagenomics; Phage encoded functions; Virus like particles

Indexed keywords

ANTIBIOTIC RESISTANCE; BACTERIAL VIRULENCE; CROHN DISEASE; ECOSYSTEM; GUT VIROME; HIGH THROUGHPUT SEQUENCING; HUMAN; IMMUNE SYSTEM; INFLAMMATORY BOWEL DISEASE; INTESTINE FLORA; LIFESTYLE; NEXT GENERATION SEQUENCING; NONHUMAN; REVIEW; SYMBIOSIS; TRANSMISSION ELECTRON MICROSCOPY; VIRUS PARTICLE;

EID: 84946740229     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2015.00918     Document Type: Review
Times cited : (162)

References (108)
  • 1
    • 84906942533 scopus 로고    scopus 로고
    • Human oral viruses are personal, persistent and gender-consistent
    • Abeles, S. R., Robles-Sikisaka, R., Ly, M., Lum, A. G., Salzman, J., Boehm, T. K., et al. (2014). Human oral viruses are personal, persistent and gender-consistent. ISME J. 8, 1753-1767. doi: 10.1038/ismej.2014.31
    • (2014) ISME J , vol.8 , pp. 1753-1767
    • Abeles, S.R.1    Robles-Sikisaka, R.2    Ly, M.3    Lum, A.G.4    Salzman, J.5    Boehm, T.K.6
  • 2
    • 36649021589 scopus 로고    scopus 로고
    • Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples
    • Ahmed, S., Macfarlane, G. T., Fite, A., McBain, A. J., Gilbert, P., and Macfarlane, S. (2007). Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples. Appl. Environ. Microbiol. 73, 7435-7442. doi: 10.1128/AEM.01143-07
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 7435-7442
    • Ahmed, S.1    Macfarlane, G.T.2    Fite, A.3    McBain, A.J.4    Gilbert, P.5    Macfarlane, S.6
  • 4
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., Ludwig, W., and Schleifer, K. H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169.
    • (1995) Microbiol. Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 6
    • 19144363310 scopus 로고    scopus 로고
    • PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information
    • Angly, F., Rodriguez-Brito, B., Bangor, D., McNairnie, P., Breitbart, M., Salamon, P., et al. (2005). PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. BMC Bioinform. 6:41. doi: 10.1186/1471-2105-6-41
    • (2005) BMC Bioinform , vol.6 , pp. 41
    • Angly, F.1    Rodriguez-Brito, B.2    Bangor, D.3    McNairnie, P.4    Breitbart, M.5    Salamon, P.6
  • 8
    • 15544369658 scopus 로고    scopus 로고
    • Host-bacterial mutualism in the human intestine
    • Bäckhed, F., Ley, R. E., Sonnenburg, J. L., Peterson, D. A., and Gordon, J. I. (2005). Host-bacterial mutualism in the human intestine. Science 307, 1915-1920. doi: 10.1126/science.1104816
    • (2005) Science , vol.307 , pp. 1915-1920
    • Bäckhed, F.1    Ley, R.E.2    Sonnenburg, J.L.3    Peterson, D.A.4    Gordon, J.I.5
  • 10
    • 84903592357 scopus 로고    scopus 로고
    • Innate and acquired bacteriophage-mediated immunity
    • Barr, J. J., Youle, M., and Rohwer, F. (2013b). Innate and acquired bacteriophage-mediated immunity. Bacteriophage 3:e25857. doi: 10.4161/bact.25857
    • (2013) Bacteriophage , vol.3
    • Barr, J.J.1    Youle, M.2    Rohwer, F.3
  • 11
    • 84894238642 scopus 로고    scopus 로고
    • Improved bacteriophage genome data is necessary for integrating viral and bacterial ecology
    • Bibby, K. (2014). Improved bacteriophage genome data is necessary for integrating viral and bacterial ecology. Microb. Ecol. 67, 242-244. doi: 10.1007/s00248-013-0325-x
    • (2014) Microb. Ecol , vol.67 , pp. 242-244
    • Bibby, K.1
  • 12
    • 83655191021 scopus 로고    scopus 로고
    • Marine viruses, truth or dare
    • Breitbart, M. (2012). Marine viruses, truth or dare. Annu. Rev. Mar. Sci. 4, 425-448. doi: 10.1146/annurev-marine-120709-142805
    • (2012) Annu. Rev. Mar. Sci , vol.4 , pp. 425-448
    • Breitbart, M.1
  • 14
    • 0141891348 scopus 로고    scopus 로고
    • Metagenomic analyses of an uncultured viral community from human feces
    • Breitbart, M., Hewson, I., Felts, B., Mahaffy, J. M., Nulton, J., Salamon, P., et al. (2003). Metagenomic analyses of an uncultured viral community from human feces. J. Bacteriol. 85, 6220-6223. doi: 10.1128/JB.185.20.6220-6223.2003
    • (2003) J. Bacteriol , vol.85 , pp. 6220-6223
    • Breitbart, M.1    Hewson, I.2    Felts, B.3    Mahaffy, J.M.4    Nulton, J.5    Salamon, P.6
  • 15
    • 3142570537 scopus 로고    scopus 로고
    • Global distribution of nearly identical phage-encoded DNA sequences
    • Breitbart, M., Miyake, J. H., and Rohwer, F. (2004). Global distribution of nearly identical phage-encoded DNA sequences. FEMS Microbiol. Lett. 236, 249-256. doi: 10.1111/j.1574-6968.2004.tb09654.x
    • (2004) FEMS Microbiol. Lett , vol.236 , pp. 249-256
    • Breitbart, M.1    Miyake, J.H.2    Rohwer, F.3
  • 16
    • 20344382957 scopus 로고    scopus 로고
    • Here a virus, there a virus, everywhere the same virus?
    • Breitbart, M., and Rohwer, F. (2005). Here a virus, there a virus, everywhere the same virus? Trends Microbiol. 13, 278-284. doi: 10.1016/j.tim.2005.04.003
    • (2005) Trends Microbiol , vol.13 , pp. 278-284
    • Breitbart, M.1    Rohwer, F.2
  • 17
    • 84882832884 scopus 로고    scopus 로고
    • Bacteriophage-host interaction, from splendid isolation into a messy reality
    • Brüssow, H. (2013). Bacteriophage-host interaction, from splendid isolation into a messy reality. Curr. Opin. Microbiol. 16, 500-506. doi: 10.1016/j.mib.2013.04.007
    • (2013) Curr. Opin. Microbiol , vol.16 , pp. 500-506
    • Brüssow, H.1
  • 18
    • 4544321685 scopus 로고    scopus 로고
    • Phages and the evolution of bacterial pathogens, from genomic rearrangements to lysogenic conversion
    • Brüssow, H., Canchaya, C., and Hardt, W.-D. (2004). Phages and the evolution of bacterial pathogens, from genomic rearrangements to lysogenic conversion. Microbiol. Mol. Biol. Rev. 68, 560-602. doi: 10.1128/MMBR.68.3.560-602.2004
    • (2004) Microbiol. Mol. Biol. Rev , vol.68 , pp. 560-602
    • Brüssow, H.1    Canchaya, C.2    Hardt, W.-D.3
  • 19
    • 0037059610 scopus 로고    scopus 로고
    • Phage genomics, small is beautiful
    • Brüssow, H., and Hendrix, R. W. (2002). Phage genomics, small is beautiful. Cell 108, 13-16. doi: 10.1016/S0092-8674(01)00637-7
    • (2002) Cell , vol.108 , pp. 13-16
    • Brüssow, H.1    Hendrix, R.W.2
  • 20
    • 0037825641 scopus 로고    scopus 로고
    • Prophages and bacterial genomics, what have we learned so far?
    • Casjens, S. (2003). Prophages and bacterial genomics, what have we learned so far? Mol. Microbiol. 49, 277-300. doi: 10.1046/j.1365-2958.2003.03580.x
    • (2003) Mol. Microbiol , vol.49 , pp. 277-300
    • Casjens, S.1
  • 21
    • 2942520975 scopus 로고    scopus 로고
    • Phage-host interaction, an ecological perspective
    • Chibani-Chennoufi, S., Bruttin, A., Dillmann, M.-L., and Brüssow, H. (2004). Phage-host interaction, an ecological perspective. J. Bacteriol. 186, 3677-3686. doi: 10.1128/JB.186.12.3677-3686.2004
    • (2004) J. Bacteriol , vol.186 , pp. 3677-3686
    • Chibani-Chennoufi, S.1    Bruttin, A.2    Dillmann, M.-L.3    Brüssow, H.4
  • 22
    • 84858376593 scopus 로고    scopus 로고
    • The impact of the gut microbiota on human health, an integrative view
    • Clemente, J. C., Ursell, L. K., Parfrey, L. W., and Knight, R. (2012). The impact of the gut microbiota on human health, an integrative view. Cell 148, 1258-1270. doi: 10.1016/j.cell.2012.01.035
    • (2012) Cell , vol.148 , pp. 1258-1270
    • Clemente, J.C.1    Ursell, L.K.2    Parfrey, L.W.3    Knight, R.4
  • 23
    • 79952306616 scopus 로고    scopus 로고
    • Antibiotic resistance genes in the bacteriophage DNA fraction of environmental samples
    • Colomer-Lluch, M., Jofre, J., and Muniesa, M. (2011). Antibiotic resistance genes in the bacteriophage DNA fraction of environmental samples. PLoS ONE 6:e17549. doi: 10.1371/journal.pone.0017549
    • (2011) PLoS ONE , vol.6
    • Colomer-Lluch, M.1    Jofre, J.2    Muniesa, M.3
  • 24
    • 84866546211 scopus 로고    scopus 로고
    • Mind-altering microorganisms, the impact of the gut microbiota on brain and behaviour
    • Cryan, J. F., and Dinan, T. G. (2012). Mind-altering microorganisms, the impact of the gut microbiota on brain and behaviour. Nat. Rev. Neurosci. 13, 701-712. doi: 10.1038/nrn3346
    • (2012) Nat. Rev. Neurosci , vol.13 , pp. 701-712
    • Cryan, J.F.1    Dinan, T.G.2
  • 25
    • 84920694495 scopus 로고    scopus 로고
    • Emerging methods to study bacteriophage infection at the single cell level
    • Dang, V. T., and Sullivan, M. B. (2014). Emerging methods to study bacteriophage infection at the single cell level. Front. Microbiol. 5:724. doi: 10.3389/fmicb.2014.00724
    • (2014) Front. Microbiol , vol.5 , pp. 724
    • Dang, V.T.1    Sullivan, M.B.2
  • 26
    • 0000077049 scopus 로고
    • Sur un microbe invisible antagoniste des bacilles dysentérique
    • d'Herelle, F. (1917). Sur un microbe invisible antagoniste des bacilles dysentérique. C.R. Acad. Sci. Paris 165, 373-375.
    • (1917) C.R. Acad. Sci. Paris , vol.165 , pp. 373-375
    • d'Herelle, F.1
  • 27
    • 84923685057 scopus 로고    scopus 로고
    • Elevated levels of circulating DNA in cardiovascular disease patients, metagenomic profiling of microbiome in the circulation
    • Dinakaran, V., Rathinavel, A., Pushpanathan, M., Sivakumar, R., Gunasekaran, P., and Rajendhran, J. (2014). Elevated levels of circulating DNA in cardiovascular disease patients, metagenomic profiling of microbiome in the circulation. PLoS ONE 9:e105221. doi: 10.1371/journal.pone.0105221
    • (2014) PLoS ONE , vol.9
    • Dinakaran, V.1    Rathinavel, A.2    Pushpanathan, M.3    Sivakumar, R.4    Gunasekaran, P.5    Rajendhran, J.6
  • 28
    • 84867903844 scopus 로고    scopus 로고
    • A composite bacteriophage alters colonization by an intestinal commensal bacterium
    • Duerkop, B. A., Clements, C. V., Rollins, D., Rodrigues, J. L. M., and Hooper, L. V. (2012). A composite bacteriophage alters colonization by an intestinal commensal bacterium. Proc. Natl. Acad. Sci. U.S.A. 109, 17621-11766. doi: 10.1073/pnas.1206136109
    • (2012) Proc. Natl. Acad. Sci. U.S.A , vol.109 , pp. 17621-17626
    • Duerkop, B.A.1    Clements, C.V.2    Rollins, D.3    Rodrigues, J.L.M.4    Hooper, L.V.5
  • 29
    • 84905041075 scopus 로고    scopus 로고
    • A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
    • Dutilh, B. E., Cassman, N., McNair, K., Sanchez, S. E., Silva, G. G. Z., Boling, L., et al. (2014). A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat. Commun. 5, 4498. doi: 10.1038/ncomms5498
    • (2014) Nat. Commun , vol.5 , pp. 4498
    • Dutilh, B.E.1    Cassman, N.2    McNair, K.3    Sanchez, S.E.4    Silva, G.G.Z.5    Boling, L.6
  • 30
    • 84870829895 scopus 로고    scopus 로고
    • Reference-independent comparative metagenomics using cross-assembly, crAss
    • Dutilh, B. E., Schmieder, R., Nulton, J., Felts, B., Salamon, P., Edwards, R. A., et al. (2012). Reference-independent comparative metagenomics using cross-assembly, crAss. Bioinformatics 28, 3225-3231. doi: 10.1093/bioinformatics/bts613
    • (2012) Bioinformatics , vol.28 , pp. 3225-3231
    • Dutilh, B.E.1    Schmieder, R.2    Nulton, J.3    Felts, B.4    Salamon, P.5    Edwards, R.A.6
  • 31
    • 84930613671 scopus 로고    scopus 로고
    • Bacteriophage and their potential roles in the human oral cavity
    • Edlund, A., Santiago-Rodriguez, T. M., Boehm, T. K., and Pride, D. T. (2015). Bacteriophage and their potential roles in the human oral cavity. J. Oral. Microbiol. 7, 27423. doi: 10.3402/jom.v7.27423
    • (2015) J. Oral. Microbiol , vol.7 , pp. 27423
    • Edlund, A.1    Santiago-Rodriguez, T.M.2    Boehm, T.K.3    Pride, D.T.4
  • 32
    • 0016170941 scopus 로고
    • Diagnostic electron microscopy of faeces. I. The viral flora of the faeces as seen by electron microscopy
    • Flewett, T. H., Bryden, A. S., and Davies, H. (1974). Diagnostic electron microscopy of faeces. I. The viral flora of the faeces as seen by electron microscopy. J. Clin. Pathol. 27, 603-608. doi: 10.1136/jcp.27.8.603
    • (1974) J. Clin. Pathol , vol.27 , pp. 603-608
    • Flewett, T.H.1    Bryden, A.S.2    Davies, H.3
  • 33
    • 0033542481 scopus 로고    scopus 로고
    • Marine viruses and their biogeochemical and ecological effects
    • Fuhrman, J. A. (1999). Marine viruses and their biogeochemical and ecological effects. Nature 399, 541-548. doi: 10.1038/21119
    • (1999) Nature , vol.399 , pp. 541-548
    • Fuhrman, J.A.1
  • 34
    • 0020512991 scopus 로고
    • Bacteriophage distribution in human faeces, continuous survey of healthy subjects and patients with internal and leukaemic diseases
    • Furuse, K., Osawa, S., Kawashiro, J., Tanaka, R., Ozawa, A., Sawamura, S., et al. (1983). Bacteriophage distribution in human faeces, continuous survey of healthy subjects and patients with internal and leukaemic diseases. J. Gen. Virol. 64, 2039-2043. doi: 10.1099/0022-1317-64-9-2039
    • (1983) J. Gen. Virol , vol.64 , pp. 2039-2043
    • Furuse, K.1    Osawa, S.2    Kawashiro, J.3    Tanaka, R.4    Ozawa, A.5    Sawamura, S.6
  • 36
    • 51649104135 scopus 로고    scopus 로고
    • Genome sequence of the Bacteroides fragilis phage ATCC 51477-B1
    • Hawkins, S. A., Layton, A. C., Ripp, S., Williams, D., and Sayler, G. S. (2008). Genome sequence of the Bacteroides fragilis phage ATCC 51477-B1. Virol. J. 5, 97. doi: 10.1186/1743-422X-5-97
    • (2008) Virol. J , vol.5 , pp. 97
    • Hawkins, S.A.1    Layton, A.C.2    Ripp, S.3    Williams, D.4    Sayler, G.S.5
  • 37
    • 0035843993 scopus 로고    scopus 로고
    • Commensal host-bacterial relationships in the gut
    • Hooper, L. V., and Gordon, J. I. (2001). Commensal host-bacterial relationships in the gut. Science 292, 1115-1118. doi: 10.1126/science.1058709
    • (2001) Science , vol.292 , pp. 1115-1118
    • Hooper, L.V.1    Gordon, J.I.2
  • 38
    • 77649086402 scopus 로고    scopus 로고
    • Immune adaptations that maintain homeostasis with the intestinal microbiota
    • Hooper, L. V., and Macpherson, A. J. (2010). Immune adaptations that maintain homeostasis with the intestinal microbiota. Nat. Rev. Immunol. 10, 159-169. doi: 10.1038/nri2710
    • (2010) Nat. Rev. Immunol , vol.10 , pp. 159-169
    • Hooper, L.V.1    Macpherson, A.J.2
  • 39
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Huttenhower, C., Gevers, D., Knight, R., Abubucker, S., Badger, J. H., Chinwalla, A. T., et al. (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214. doi: 10.1038/nature11234
    • (2012) Nature , vol.486 , pp. 207-214
    • Huttenhower, C.1    Gevers, D.2    Knight, R.3    Abubucker, S.4    Badger, J.H.5    Chinwalla, A.T.6
  • 40
    • 79251559429 scopus 로고    scopus 로고
    • The human gut mobile metagenome, a metazoan perspective
    • Jones, B. V. (2010). The human gut mobile metagenome, a metazoan perspective. Gut Microbes 1, 415-431. doi: 10.4161/gmic.1.6.14087
    • (2010) Gut Microbes , vol.1 , pp. 415-431
    • Jones, B.V.1
  • 41
    • 35348835922 scopus 로고    scopus 로고
    • Accessing the mobile metagenome of the human gut microbiota
    • Jones, B. V., and Marchesi, J. R. (2007). Accessing the mobile metagenome of the human gut microbiota. Mol. Biosyst. 3, 749-758. doi: 10.1039/b705657e
    • (2007) Mol. Biosyst , vol.3 , pp. 749-758
    • Jones, B.V.1    Marchesi, J.R.2
  • 42
    • 83055177100 scopus 로고    scopus 로고
    • Diversity and abundance of single-stranded DNA viruses in human feces
    • Kim, M.-S., Park, E.-J., Roh, S. W., and Bae, J.-W. (2011). Diversity and abundance of single-stranded DNA viruses in human feces. Appl. Environ. Microbiol. 77, 8062-8070. doi: 10.1128/AEM.06331-11
    • (2011) Appl. Environ. Microbiol , vol.77 , pp. 8062-8070
    • Kim, M.-S.1    Park, E.-J.2    Roh, S.W.3    Bae, J.-W.4
  • 43
    • 84927693101 scopus 로고    scopus 로고
    • Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities
    • Koskella, B., and Brockhurst, M. A. (2014). Bacteria-phage coevolution as a driver of ecological and evolutionary processes in microbial communities. FEMS Microbiol. Rev. 38, 916-931. doi: 10.1111/1574-6976.12072
    • (2014) FEMS Microbiol. Rev , vol.38 , pp. 916-931
    • Koskella, B.1    Brockhurst, M.A.2
  • 44
    • 84876237691 scopus 로고    scopus 로고
    • Exploring host-microbiota interactions in animal models and humans
    • Kostic, A. D., Howitt, M. R., and Garrett, W. S. (2013). Exploring host-microbiota interactions in animal models and humans. Genes Dev. 27, 701-718. doi: 10.1101/gad.212522.112
    • (2013) Genes Dev , vol.27 , pp. 701-718
    • Kostic, A.D.1    Howitt, M.R.2    Garrett, W.S.3
  • 45
    • 39649093188 scopus 로고    scopus 로고
    • Dysbiosis in inflammatory bowel disease, a role for bacteriophages?
    • Lepage, P., Colombet, J., Marteau, P., Sime-Ngando, T., Doré, J., and Leclerc, M. (2008). Dysbiosis in inflammatory bowel disease, a role for bacteriophages? Gut 57, 424-425. doi: 10.1136/gut.2007.134668
    • (2008) Gut , vol.57 , pp. 424-425
    • Lepage, P.1    Colombet, J.2    Marteau, P.3    Sime-Ngando, T.4    Doré, J.5    Leclerc, M.6
  • 46
    • 66849124585 scopus 로고    scopus 로고
    • The bacteriophages in human-and animal body-associated microbial communities
    • Letarov, A., and Kulikov, E. (2009). The bacteriophages in human-and animal body-associated microbial communities. J. Appl. Microbiol. 107, 1-13. doi: 10.1111/j.1365-2672.2009.04143.x
    • (2009) J. Appl. Microbiol , vol.107 , pp. 1-13
    • Letarov, A.1    Kulikov, E.2
  • 47
    • 32944466887 scopus 로고    scopus 로고
    • Ecological and evolutionary forces shaping microbial diversity in the human intestine
    • Ley, R. E., Peterson, D. A., and Gordon, J. I. (2006). Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124, 837-848. doi: 10.1016/j.cell.2006.02.017
    • (2006) Cell , vol.124 , pp. 837-848
    • Ley, R.E.1    Peterson, D.A.2    Gordon, J.I.3
  • 48
    • 0032879213 scopus 로고    scopus 로고
    • Plasmid transfer in the animal intestine and other dynamic bacterial populations, the role of community structure and environment
    • Licht, T. R., Christensen, B. B., Krogfelt, K. A., and Molin, S. (1999). Plasmid transfer in the animal intestine and other dynamic bacterial populations, the role of community structure and environment. Microbiology 145, 2615-2622.
    • (1999) Microbiology , vol.145 , pp. 2615-2622
    • Licht, T.R.1    Christensen, B.B.2    Krogfelt, K.A.3    Molin, S.4
  • 49
    • 33644916136 scopus 로고    scopus 로고
    • Conjugative gene transfer in the gastrointestinal environment
    • Licht, T. R., and Wilcks, A. (2005). Conjugative gene transfer in the gastrointestinal environment. Adv. Appl. Microbiol. 58C, 77-95. doi: 10.1016/S0065-2164(05)58002-X
    • (2005) Adv. Appl. Microbiol , vol.58C , pp. 77-95
    • Licht, T.R.1    Wilcks, A.2
  • 50
    • 84904999639 scopus 로고    scopus 로고
    • Bacteria, phages and pigs, the effects of in-feed antibiotics on the microbiome at different gut locations
    • Looft, T., Allen, H. K., Cantarel, B. L., Levine, U. Y., Bayles, D. O., Alt, D. P., et al. (2014). Bacteria, phages and pigs, the effects of in-feed antibiotics on the microbiome at different gut locations. ISME J. 8, 1566-1576. doi: 10.1038/ismej.2014.12
    • (2014) ISME J , vol.8 , pp. 1566-1576
    • Looft, T.1    Allen, H.K.2    Cantarel, B.L.3    Levine, U.Y.4    Bayles, D.O.5    Alt, D.P.6
  • 51
    • 84905057679 scopus 로고    scopus 로고
    • Bacteriophages as a reservoir of extended-spectrum β-lactamase and fluoroquinolone resistance genes in the environment
    • Marti, E., Variatza, E., and Balcázar, J. L. (2014). Bacteriophages as a reservoir of extended-spectrum β-lactamase and fluoroquinolone resistance genes in the environment. Clin. Microbiol. Infect. Dis. 20, O456-O459. doi: 10.1111/1469-0691.12446
    • (2014) Clin. Microbiol. Infect. Dis , vol.20 , pp. O456-O459
    • Marti, E.1    Variatza, E.2    Balcázar, J.L.3
  • 52
    • 44449106055 scopus 로고    scopus 로고
    • A microbial symbiosis factor prevents intestinal inflammatory disease
    • Mazmanian, S. K., Round, J. L., and Kasper, D. L. (2008). A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453, 620-625. doi: 10.1038/nature07008
    • (2008) Nature , vol.453 , pp. 620-625
    • Mazmanian, S.K.1    Round, J.L.2    Kasper, D.L.3
  • 53
    • 77952958875 scopus 로고    scopus 로고
    • Mining metagenomic data for novel domains, BACON, a new carbohydrate-binding module
    • Mello, L. V., Chen, X., and Rigden, D. J. (2010). Mining metagenomic data for novel domains, BACON, a new carbohydrate-binding module. FEBS Lett. 584, 2421-2426. doi: 10.1016/j.febslet.2010.04.045
    • (2010) FEBS Lett , vol.584 , pp. 2421-2426
    • Mello, L.V.1    Chen, X.2    Rigden, D.J.3
  • 55
    • 80053528043 scopus 로고    scopus 로고
    • The human gut virome, inter-individual variation and dynamic response to diet
    • Minot, S., Sinha, R., Chen, J., Li, H., Keilbaugh, S. A., Wu, G. D., et al. (2011). The human gut virome, inter-individual variation and dynamic response to diet. Genome Res. 21, 1616-1625. doi: 10.1101/gr.122705.111
    • (2011) Genome Res , vol.21 , pp. 1616-1625
    • Minot, S.1    Sinha, R.2    Chen, J.3    Li, H.4    Keilbaugh, S.A.5    Wu, G.D.6
  • 56
    • 84865013146 scopus 로고    scopus 로고
    • Conservation of gene cassettes among diverse viruses of the human gut
    • Minot, S., Wu, G. D., Lewis, J. D., and Bushman, F. D. (2012a). Conservation of gene cassettes among diverse viruses of the human gut. PLoS ONE 7:e42342. doi: 10.1371/journal.pone.0042342
    • (2012) PLoS ONE , vol.7
    • Minot, S.1    Wu, G.D.2    Lewis, J.D.3    Bushman, F.D.4
  • 58
    • 84880509968 scopus 로고    scopus 로고
    • Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome
    • Modi, S. R., Lee, H. H., Spina, C. S., and Collins, J. J. (2013). Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome. Nature 499, 219-222. doi: 10.1038/nature12212
    • (2013) Nature , vol.499 , pp. 219-222
    • Modi, S.R.1    Lee, H.H.2    Spina, C.S.3    Collins, J.J.4
  • 59
    • 84906699923 scopus 로고    scopus 로고
    • Identifying and analyzing bacteriophages in human fecal samples, what could we discover?
    • Muniesa, M., and Jofre, J. (2014). Identifying and analyzing bacteriophages in human fecal samples, what could we discover? Future Microbiol. 9, 879-886. doi: 10.2217/fmb.14.47
    • (2014) Future Microbiol , vol.9 , pp. 879-886
    • Muniesa, M.1    Jofre, J.2
  • 60
    • 84922245262 scopus 로고    scopus 로고
    • Disease-specific alterations in the enteric virome in inflammatory bowel disease
    • Norman, J. M., Handley, S. A., Baldridge, M. T., Droit, L., Liu, C. Y., Keller, B. C., et al. (2015). Disease-specific alterations in the enteric virome in inflammatory bowel disease. Cell 160, 447-460. doi: 10.1016/j.cell.2015.01.002
    • (2015) Cell , vol.160 , pp. 447-460
    • Norman, J.M.1    Handley, S.A.2    Baldridge, M.T.3    Droit, L.4    Liu, C.Y.5    Keller, B.C.6
  • 61
    • 84884239907 scopus 로고    scopus 로고
    • Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences
    • Ogilvie, L. A., Bowler, L. D., Caplin, J., Dedi, C., Diston, D., Cheek, E., et al. (2013). Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences. Nat. Commun. 4, 2420. doi: 10.1038/ncomms3420
    • (2013) Nat. Commun , vol.4 , pp. 2420
    • Ogilvie, L.A.1    Bowler, L.D.2    Caplin, J.3    Dedi, C.4    Diston, D.5    Cheek, E.6
  • 62
    • 84865094411 scopus 로고    scopus 로고
    • Comparative (meta) genomic analysis and ecological profiling of human gut-specific bacteriophage fB124-14
    • Ogilvie, L. A., Caplin, J., Dedi, C., Diston, D., Cheek, E., Bowler, L., et al. (2012a). Comparative (meta) genomic analysis and ecological profiling of human gut-specific bacteriophage fB124-14. PLoS ONE 7:e35053. doi: 10.1371/journal.pone.0035053
    • (2012) PLoS ONE , vol.7
    • Ogilvie, L.A.1    Caplin, J.2    Dedi, C.3    Diston, D.4    Cheek, E.5    Bowler, L.6
  • 63
    • 84858139933 scopus 로고    scopus 로고
    • Evolutionary, ecological and biotechnological perspectives on plasmids resident in the human gut mobile metagenome
    • Ogilvie, L. A., Firouzmand, S., and Jones, B. V. (2012b). Evolutionary, ecological and biotechnological perspectives on plasmids resident in the human gut mobile metagenome. Bioeng. Bugs 3, 13-31. doi: 10.4161/bbug.3.1.17883
    • (2012) Bioeng. Bugs , vol.3 , pp. 13-31
    • Ogilvie, L.A.1    Firouzmand, S.2    Jones, B.V.3
  • 65
    • 84946742208 scopus 로고    scopus 로고
    • 'The human gut mobile metagenome, a metazoan perspective,'
    • ed. S. Highlander (New York: Springer Science & Business Media)
    • Ogilvie, L. A., and Jones, B. V. (2013). "The human gut mobile metagenome, a metazoan perspective," in Encyclopedia of Metagenomics, ed. S. Highlander (New York: Springer Science & Business Media), 1-14.
    • (2013) Encyclopedia of Metagenomics , pp. 1-14
    • Ogilvie, L.A.1    Jones, B.V.2
  • 66
    • 33745594044 scopus 로고    scopus 로고
    • The gut flora as a forgotten organ
    • O'Hara, A. M., and Shanahan, F. (2006). The gut flora as a forgotten organ. EMBO Rep. 7, 688-693. doi: 10.1038/sj.embor.7400731
    • (2006) EMBO Rep , vol.7 , pp. 688-693
    • O'Hara, A.M.1    Shanahan, F.2
  • 67
    • 84926189914 scopus 로고    scopus 로고
    • Crosstalk at the mucosal border, importance of the gut microenvironment in IBS
    • Ohman, L., Törnblom, H., and Simrén, M. (2015). Crosstalk at the mucosal border, importance of the gut microenvironment in IBS. Nat. Rev. Gastroenterol. Hepatol. 12, 36-49. doi: 10.1038/nrgastro.2014.200
    • (2015) Nat. Rev. Gastroenterol. Hepatol , vol.12 , pp. 36-49
    • Ohman, L.1    Törnblom, H.2    Simrén, M.3
  • 68
  • 70
    • 0037315735 scopus 로고    scopus 로고
    • Evolutionary implications of microbial genome tetranucleotide frequency biases
    • Pride, D. T., Meinersmann, R. J., Wassenaar, T. M., and Blaser, M. J. (2003). Evolutionary implications of microbial genome tetranucleotide frequency biases. Genome Res. 13, 145-158. doi: 10.1101/gr.335003
    • (2003) Genome Res , vol.13 , pp. 145-158
    • Pride, D.T.1    Meinersmann, R.J.2    Wassenaar, T.M.3    Blaser, M.J.4
  • 71
    • 84859885188 scopus 로고    scopus 로고
    • Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome
    • Pride, D. T., Salzman, J., Haynes, M., Rohwer, F., Davis-Long, C., White, R. A. III, et al. (2012). Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. ISME J. 6, 915-926. doi: 10.1038/ismej.2011.169
    • (2012) ISME J , vol.6 , pp. 915-926
    • Pride, D.T.1    Salzman, J.2    Haynes, M.3    Rohwer, F.4    Davis-Long, C.5    White, R.A.6
  • 72
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., et al. (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59-65. doi: 10.1038/nature08821
    • (2010) Nature , vol.464 , pp. 59-65
    • Qin, J.1    Li, R.2    Raes, J.3    Arumugam, M.4    Burgdorf, K.S.5    Manichanh, C.6
  • 73
    • 84927692256 scopus 로고    scopus 로고
    • The first 1000 cultured species of the human gastrointestinal microbiota
    • Rajilic-Stojanovic, M., and de Vos, W. M. (2014). The first 1000 cultured species of the human gastrointestinal microbiota. FEMS Microbiol. Rev. 38, 996-1047. doi: 10.1111/1574-6976.12075
    • (2014) FEMS Microbiol. Rev , vol.38 , pp. 996-1047
    • Rajilic-Stojanovic, M.1    de Vos, W.M.2
  • 74
    • 3242664636 scopus 로고    scopus 로고
    • Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis
    • Rakoff-Nahoum, S., Paglino, J., Eslami-Varzaneh, F., Edberg, S., and Medzhitov, R. (2004). Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis. Cell 118, 229-241. doi: 10.1016/j.cell.2004.07.002
    • (2004) Cell , vol.118 , pp. 229-241
    • Rakoff-Nahoum, S.1    Paglino, J.2    Eslami-Varzaneh, F.3    Edberg, S.4    Medzhitov, R.5
  • 75
    • 0242523909 scopus 로고    scopus 로고
    • The uncultured microbial majority
    • Rappé, M. S., and Giovannoni, S. J. (2003). The uncultured microbial majority. Annu. Rev. Microbiol. 57, 369-394. doi: 10.1146/annurev.micro.57.030502.090759
    • (2003) Annu. Rev. Microbiol , vol.57 , pp. 369-394
    • Rappé, M.S.1    Giovannoni, S.J.2
  • 76
    • 77954627922 scopus 로고    scopus 로고
    • Viruses in the faecal microbiota of monozygotic twins and their mothers
    • Reyes, A., Haynes, M., Hanson, N., Angly, F. E., Heath, A. C., Rohwer, F., et al. (2010). Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 466, 334-338. doi: 10.1038/nature09199
    • (2010) Nature , vol.466 , pp. 334-338
    • Reyes, A.1    Haynes, M.2    Hanson, N.3    Angly, F.E.4    Heath, A.C.5    Rohwer, F.6
  • 77
    • 84865169911 scopus 로고    scopus 로고
    • Going viral, next-generation sequencing applied to phage populations in the human gut
    • Reyes, A., Semenkovich, N. P., Whiteson, K., Rohwer, F., and Gordon, J. I. (2012). Going viral, next-generation sequencing applied to phage populations in the human gut. Nat. Rev. Microbiol. 10, 607-617. doi: 10.1038/nrmicro2853
    • (2012) Nat. Rev. Microbiol , vol.10 , pp. 607-617
    • Reyes, A.1    Semenkovich, N.P.2    Whiteson, K.3    Rohwer, F.4    Gordon, J.I.5
  • 78
    • 84890281518 scopus 로고    scopus 로고
    • Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
    • Reyes, A., Wu, M., McNulty, N. P., Rohwer, F. L., and Gordon, J. I. (2013). Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut. Proc. Natl. Acad. Sci. U.S.A. 110, 20236-20241. doi: 10.1073/pnas.1319470110
    • (2013) Proc. Natl. Acad. Sci. U.S.A , vol.110 , pp. 20236-20241
    • Reyes, A.1    Wu, M.2    McNulty, N.P.3    Rohwer, F.L.4    Gordon, J.I.5
  • 79
    • 66149151286 scopus 로고    scopus 로고
    • Viruses manipulate the marine environment
    • Rohwer, F., and Thurber, R. V. (2009). Viruses manipulate the marine environment. Nature 459, 207-212. doi: 10.1038/nature08060
    • (2009) Nature , vol.459 , pp. 207-212
    • Rohwer, F.1    Thurber, R.V.2
  • 80
    • 84899552918 scopus 로고    scopus 로고
    • Metavir 2, new tools for viral metagenome comparison and assembled virome analysis
    • Roux, S., Tournayre, J., Mahul, A., Debroas, D., and Enault, F. (2014). Metavir 2, new tools for viral metagenome comparison and assembled virome analysis. BMC Bioinform. 15:76. doi: 10.1186/1471-2105-15-76
    • (2014) BMC Bioinform , vol.15 , pp. 76
    • Roux, S.1    Tournayre, J.2    Mahul, A.3    Debroas, D.4    Enault, F.5
  • 81
    • 8144228665 scopus 로고    scopus 로고
    • Movement of viruses between biomes
    • Sano, E., Carlson, S., Wegley, L., and Rohwer, F. (2004). Movement of viruses between biomes. Appl. Environ. Microbiol. 70, 5842-5846. doi: 10.1128/AEM.70.10.5842-5846.2004
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 5842-5846
    • Sano, E.1    Carlson, S.2    Wegley, L.3    Rohwer, F.4
  • 82
    • 84866069326 scopus 로고    scopus 로고
    • Artificial neural networks trained to detect viral and phage structural proteins
    • Seguritan, V., Alves, N., Arnoult, M., Raymond, A., Lorimer, D., Burgin, A. B., et al. (2012). Artificial neural networks trained to detect viral and phage structural proteins. PLoS Comput. Biol. 8:e1002657. doi: 10.1371/journal.pcbi.1002657
    • (2012) PLoS Comput. Biol , vol.8
    • Seguritan, V.1    Alves, N.2    Arnoult, M.3    Raymond, A.4    Lorimer, D.5    Burgin, A.B.6
  • 83
    • 83055186603 scopus 로고    scopus 로고
    • Ecology drives a global network of gene exchange connecting the human microbiome
    • Smillie, C. S., Smith, M. B., Friedman, J., Cordero, O. X., David, L. A., and Alm, E. J. (2011). Ecology drives a global network of gene exchange connecting the human microbiome. Nature 480, 241-244. doi: 10.1038/nature10571
    • (2011) Nature , vol.480 , pp. 241-244
    • Smillie, C.S.1    Smith, M.B.2    Friedman, J.3    Cordero, O.X.4    David, L.A.5    Alm, E.J.6
  • 85
    • 55949124035 scopus 로고    scopus 로고
    • Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
    • Sokol, H., Pigneur, B., Watterlot, L., Lakhdari, O., Bermúdez-Humarán, L. G., Gratadoux, J.-J., et al. (2008). Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc. Natl. Acad. Sci. U.S.A. 105, 16731-16736. doi: 10.1073/pnas.0804812105
    • (2008) Proc. Natl. Acad. Sci. U.S.A , vol.105 , pp. 16731-16736
    • Sokol, H.1    Pigneur, B.2    Watterlot, L.3    Lakhdari, O.4    Bermúdez-Humarán, L.G.5    Gratadoux, J.-J.6
  • 86
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea
    • Sorek, R., Kunin, V., and Hugenholtz, P. (2008). CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat. Rev. Microbiol. 6, 181-186. doi: 10.1038/nrmicro1793
    • (2008) Nat. Rev. Microbiol , vol.6 , pp. 181-186
    • Sorek, R.1    Kunin, V.2    Hugenholtz, P.3
  • 87
    • 84865169354 scopus 로고    scopus 로고
    • CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome
    • Stern, A., Mick, E., Tirosh, I., Sagy, O., and Sorek, R. (2012). CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome. Genome Res. 22, 1985-1994. doi: 10.1101/gr.138297.112
    • (2012) Genome Res , vol.22 , pp. 1985-1994
    • Stern, A.1    Mick, E.2    Tirosh, I.3    Sagy, O.4    Sorek, R.5
  • 88
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • Suau, A., Bonnet, R., Sutren, M., Godon, J. J., Gibson, G. R., Collins, M. D., et al. (1999). Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl. Environ. Microbiol. 65, 4799-4807.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2    Sutren, M.3    Godon, J.J.4    Gibson, G.R.5    Collins, M.D.6
  • 89
    • 25144506135 scopus 로고    scopus 로고
    • Viruses in the sea
    • Suttle, C. A. (2005a). Viruses in the sea. Nature 437, 356-361. doi: 10.1038/nature04160
    • (2005) Nature , vol.437 , pp. 356-361
    • Suttle, C.A.1
  • 90
    • 23944494203 scopus 로고    scopus 로고
    • Crystal ball. The viriosphere, the greatest biological diversity on Earth and driver of global processes
    • Suttle, C. A. (2005b). Crystal ball. The viriosphere, the greatest biological diversity on Earth and driver of global processes. Environ. Microbiol. 7, 481-482. doi: 10.1111/j.1462-2920.2005.803_11.x
    • (2005) Environ. Microbiol , vol.7 , pp. 481-482
    • Suttle, C.A.1
  • 91
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses-major players in the global ecosystem
    • Suttle, C. A. (2007). Marine viruses-major players in the global ecosystem. Nat. Rev. Microbiol. 5, 801-812. doi: 10.1038/nrmicro1750
    • (2007) Nat. Rev. Microbiol , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 92
    • 13244253777 scopus 로고    scopus 로고
    • TETRA, a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences
    • Teeling, H., Waldmann, J., Lombardot, T., Bauer, M., and Glöckner, F. O. (2004). TETRA, a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences. BMC Bioinform. 5:163. doi: 10.1186/1471-2105-5-163
    • (2004) BMC Bioinform , vol.5 , pp. 163
    • Teeling, H.1    Waldmann, J.2    Lombardot, T.3    Bauer, M.4    Glöckner, F.O.5
  • 94
    • 64749109065 scopus 로고    scopus 로고
    • Laboratory procedures to generate viral metagenomes
    • Thurber, R. V., Haynes, M., Breitbart, M., Wegley, L., and Rohwer, F. (2009). Laboratory procedures to generate viral metagenomes. Nat. Protoc. 4, 470-483. doi: 10.1038/nprot.2009.10
    • (2009) Nat. Protoc , vol.4 , pp. 470-483
    • Thurber, R.V.1    Haynes, M.2    Breitbart, M.3    Wegley, L.4    Rohwer, F.5
  • 95
    • 50749121524 scopus 로고
    • An investigation on the nature of ultra-microscopic viruses
    • Twort, F. W. (1915). An investigation on the nature of ultra-microscopic viruses. Lancet 186, 1241-1243. doi: 10.1016/S0140-6736(01)20383-3
    • (1915) Lancet , vol.186 , pp. 1241-1243
    • Twort, F.W.1
  • 96
    • 84884563236 scopus 로고    scopus 로고
    • Bacteriophages in gut samples from pediatric Crohn's disease patients, metagenomic analysis using 454 pyrosequencing
    • Wagner, J., Maksimovic, J., Farries, G., Sim, W. H., Bishop, R. F., Cameron, D. J., et al. (2013). Bacteriophages in gut samples from pediatric Crohn's disease patients, metagenomic analysis using 454 pyrosequencing. Inflamm. Bowel. Dis. 19, 1598-1608.
    • (2013) Inflamm. Bowel. Dis , vol.19 , pp. 1598-1608
    • Wagner, J.1    Maksimovic, J.2    Farries, G.3    Sim, W.H.4    Bishop, R.F.5    Cameron, D.J.6
  • 97
    • 84855923925 scopus 로고    scopus 로고
    • Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers
    • Wang, T., Cai, G., Qiu, Y., Fei, N., Zhang, M., Pang, X., et al. (2012). Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers. ISME J. 6, 320-329. doi: 10.1038/ismej.2011.109
    • (2012) ISME J , vol.6 , pp. 320-329
    • Wang, T.1    Cai, G.2    Qiu, Y.3    Fei, N.4    Zhang, M.5    Pang, X.6
  • 98
    • 79251573217 scopus 로고    scopus 로고
    • Cryptic prophages help bacteria cope with adverse environments
    • Wang, X., Kim, Y., Ma, Q., Hong, S. H., Pokusaeva, K., Sturino, J. M., et al. (2010). Cryptic prophages help bacteria cope with adverse environments. Nat. Commun. 1, 147. doi: 10.1038/ncomms1146
    • (2010) Nat. Commun , vol.1 , pp. 147
    • Wang, X.1    Kim, Y.2    Ma, Q.3    Hong, S.H.4    Pokusaeva, K.5    Sturino, J.M.6
  • 99
    • 1942486000 scopus 로고    scopus 로고
    • Ecology of prokaryotic viruses
    • Weinbauer, M. G. (2004). Ecology of prokaryotic viruses. FEMS Microbiol. Rev. 28, 127-181. doi: 10.1016/j.femsre.2003.08.001
    • (2004) FEMS Microbiol. Rev , vol.28 , pp. 127-181
    • Weinbauer, M.G.1
  • 100
    • 35448985445 scopus 로고    scopus 로고
    • Bacteroides, the good, the bad, and the nitty-gritty
    • Wexler, H. M. (2007). Bacteroides, the good, the bad, and the nitty-gritty. Clin. Microbiol. Rev. 20, 593-621. doi: 10.1128/CMR.00008-07
    • (2007) Clin. Microbiol. Rev , vol.20 , pp. 593-621
    • Wexler, H.M.1
  • 102
    • 84865205784 scopus 로고    scopus 로고
    • VIROME, a standard operating procedure for analysis of viral metagenome sequences
    • Wommack, K. E., Bhavsar, J., Polson, S. W., Chen, J., Dumas, M., Srinivasiah, S., et al. (2012). VIROME, a standard operating procedure for analysis of viral metagenome sequences. Stand. Genomic Sci. 6, 427-439. doi: 10.4056/sigs.2945050
    • (2012) Stand. Genomic Sci , vol.6 , pp. 427-439
    • Wommack, K.E.1    Bhavsar, J.2    Polson, S.W.3    Chen, J.4    Dumas, M.5    Srinivasiah, S.6
  • 103
    • 0034053843 scopus 로고    scopus 로고
    • Virioplankton, viruses in aquatic ecosystems
    • Wommack, K. E., and Colwell, R. R. (2000). Virioplankton, viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64, 69-114. doi: 10.1128/MMBR.64.1.69-114.2000
    • (2000) Microbiol. Mol. Biol. Rev , vol.64 , pp. 69-114
    • Wommack, K.E.1    Colwell, R.R.2
  • 105
    • 80053618114 scopus 로고    scopus 로고
    • Linking long-term dietary patterns with gut microbial enterotypes
    • Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y.-Y., Keilbaugh, S. A., et al. (2011). Linking long-term dietary patterns with gut microbial enterotypes. Science 334, 105-108. doi: 10.1126/science.1208344
    • (2011) Science , vol.334 , pp. 105-108
    • Wu, G.D.1    Chen, J.2    Hoffmann, C.3    Bittinger, K.4    Chen, Y.-Y.5    Keilbaugh, S.A.6
  • 106
    • 31144459030 scopus 로고    scopus 로고
    • RNA viral community in human feces: prevalence of plant pathogenic viruses
    • Zhang, T., Breitbart, M., Lee, W. H., Run, J.-Q., Wei, C. L., Soh, S. W., et al. (2006). RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol. 4:e3. doi: 10.1371/journal.pbio.0040003
    • (2006) PLoS Biol , vol.4
    • Zhang, T.1    Breitbart, M.2    Lee, W.H.3    Run, J.-Q.4    Wei, C.L.5    Soh, S.W.6
  • 107
    • 84899452861 scopus 로고    scopus 로고
    • Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota
    • Zhang, Z., Geng, J., Tang, X., Fan, H., Xu, J., Wen, X., et al. (2014). Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota. ISME J. 8, 881-893. doi: 10.1038/ismej.2013.185
    • (2014) ISME J , vol.8 , pp. 881-893
    • Zhang, Z.1    Geng, J.2    Tang, X.3    Fan, H.4    Xu, J.5    Wen, X.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.