-
1
-
-
84905496054
-
Development and application of site mapping methods for the design of glycosaminoglycans
-
(in press)
-
Agostino M, Gandhi NS, Mancera RL. 2014. Development and application of site mapping methods for the design of glycosaminoglycans. Glycobiology (in press).
-
(2014)
Glycobiology
-
-
Agostino, M.1
Gandhi, N.S.2
Mancera, R.L.3
-
2
-
-
0034708506
-
The effect of a reducing-end extension on pentasaccharide binding by antithrombin
-
Belzar KJ, Dafforn TR, Petitou M, Carrell RW, Huntington JA. 2000. The effect of a reducing-end extension on pentasaccharide binding by antithrombin. J Biol Chem. 275:8733-8741.
-
(2000)
J Biol Chem.
, vol.275
, pp. 8733-8741
-
-
Belzar, K.J.1
Dafforn, T.R.2
Petitou, M.3
Carrell, R.W.4
Huntington, J.A.5
-
3
-
-
0033531628
-
Docking of glycosaminoglycans to heparinbinding proteins: Validation for aFGF, bFGF, and antithrombin and application to IL-8
-
Bitomsky W, Wade RC. 1999. Docking of glycosaminoglycans to heparinbinding proteins: Validation for aFGF, bFGF, and antithrombin and application to IL-8. J Am Chem Soc. 121:3004-3013.
-
(1999)
J Am Chem Soc.
, vol.121
, pp. 3004-3013
-
-
Bitomsky, W.1
Wade, R.C.2
-
5
-
-
13244270050
-
Crystal structure of thrombin bound to heparin
-
Carter WJ, Cama E, Huntington JA. 2005. Crystal structure of thrombin bound to heparin. J Biol Chem. 280:2745-2749.
-
(2005)
J Biol Chem.
, vol.280
, pp. 2745-2749
-
-
Carter, W.J.1
Cama, E.2
Huntington, J.A.3
-
6
-
-
44349157970
-
Using a 3-O-sulfated heparin octasaccharide to inhibit the entry of herpes simplex virus type 1
-
Copeland R, Balasubramaniam A, Tiwari V, Zhang F, Bridges A, Linhardt RJ, Shukla D, Liu J. 2008. Using a 3-O-sulfated heparin octasaccharide to inhibit the entry of herpes simplex virus type 1. Biochemistry. 47: 5774-5783.
-
(2008)
Biochemistry
, vol.47
, pp. 5774-5783
-
-
Copeland, R.1
Balasubramaniam, A.2
Tiwari, V.3
Zhang, F.4
Bridges, A.5
Linhardt, R.J.6
Shukla, D.7
Liu, J.8
-
7
-
-
1842692143
-
A general definition of ring puckering
-
Cremer D, Pople JA. 1975. A general definition of ring puckering. J Am Chem Soc. 97:1354-1358.
-
(1975)
J Am Chem Soc.
, vol.97
, pp. 1354-1358
-
-
Cremer, D.1
Pople, J.A.2
-
8
-
-
84882540439
-
Antithrombin activation and designing novel heparin mimics
-
Garg HG, Linhardt RJ, Hales CA, editors. Amsterdam: Elsevier Science
-
Desai UR. 2005. Antithrombin activation and designing novel heparin mimics. In: Garg HG, Linhardt RJ, Hales CA, editors. Chemistry and Biology of Heparin and Heparan Sulfate. Amsterdam: Elsevier Science. p. 483-512.
-
(2005)
Chemistry and Biology of Heparin and Heparan Sulfate
, pp. 483-512
-
-
Desai, U.R.1
-
9
-
-
84881538094
-
The promise of sulfated synthetic small molecules as modulators of glycosaminoglycan function
-
Desai UR. 2013. The promise of sulfated synthetic small molecules as modulators of glycosaminoglycan function. Future Med Chem. 5:1363-1366.
-
(2013)
Future Med Chem.
, vol.5
, pp. 1363-1366
-
-
Desai, U.R.1
-
10
-
-
0032571333
-
Mechanism of heparin activation of antithrombin. Role of individual residues of the pentasaccharide activating sequence in the recognition of native and activated states of antithrombin
-
Desai UR, Petitou M, Bjork I, Olson ST. 1998. Mechanism of heparin activation of antithrombin. Role of individual residues of the pentasaccharide activating sequence in the recognition of native and activated states of antithrombin. J Biol Chem. 273:7478-7487.
-
(1998)
J Biol Chem.
, vol.273
, pp. 7478-7487
-
-
Desai, U.R.1
Petitou, M.2
Bjork, I.3
Olson, S.T.4
-
11
-
-
0035997376
-
Order out of chaos: Assembly of ligand binding sites in heparan sulfate
-
Esko JD, Selleck SB. 2002. Order out of chaos: Assembly of ligand binding sites in heparan sulfate. Annu Rev Biochem. 71:435-471.
-
(2002)
Annu Rev Biochem.
, vol.71
, pp. 435-471
-
-
Esko, J.D.1
Selleck, S.B.2
-
12
-
-
0027578413
-
Molecular dynamics study of iduronate ring conformations
-
Forster MJ, Mulloy B. 1993. Molecular dynamics study of iduronate ring conformations. Biopolymers. 33:575-588.
-
(1993)
Biopolymers.
, vol.33
, pp. 575-588
-
-
Forster, M.J.1
Mulloy, B.2
-
13
-
-
56649100319
-
The structure of glycosaminoglycans and their interactions with proteins
-
Gandhi NS, Mancera RL. 2008. The structure of glycosaminoglycans and their interactions with proteins. Chem Biol Drug Des. 72:455-482.
-
(2008)
Chem Biol Drug Des.
, vol.72
, pp. 455-482
-
-
Gandhi, N.S.1
Mancera, R.L.2
-
14
-
-
0025764198
-
Constructing a molecular model of the interaction between antithrombin III and a potent heparin analogue
-
Grootenhuis PDJ, van Boeckel CAA. 1991. Constructing a molecular model of the interaction between antithrombin III and a potent heparin analogue. J Am Chem Soc. 113:2743-2747.
-
(1991)
J Am Chem Soc.
, vol.113
, pp. 2743-2747
-
-
Grootenhuis, P.D.J.1
Van-Boeckel, C.A.A.2
-
15
-
-
84871422681
-
An unusual antithrombin-binding heparin octasaccharide with an additional 3-O-sulfated glucosamine in the active pentasaccharide sequence
-
Guerrini M, Elli S, Mourier P, Rudd TR, Gaudesi D, Casu B, Boudier C, Torri G, Viskov C. 2013. An unusual antithrombin-binding heparin octasaccharide with an additional 3-O-sulfated glucosamine in the active pentasaccharide sequence. Biochem J. 449:343-351.
-
(2013)
Biochem J.
, vol.449
, pp. 343-351
-
-
Guerrini, M.1
Elli, S.2
Mourier, P.3
Rudd, T.R.4
Gaudesi, D.5
Casu, B.6
Boudier, C.7
Torri, G.8
Viskov, C.9
-
16
-
-
0031445112
-
The anticoagulant activation of antithrombin by heparin
-
Jin L, Abrahams JP, Skinner R, Petitou M, Pike RN, Carrell RW. 1997. The anticoagulant activation of antithrombin by heparin. Proc Natl Acad Sci USA. 94:14683-14688.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 14683-14688
-
-
Jin, L.1
Abrahams, J.P.2
Skinner, R.3
Petitou, M.4
Pike, R.N.5
Carrell, R.W.6
-
17
-
-
33646581724
-
Antithrombin-S195A factor Xa-heparin structure reveals the allosteric mechanism of antithrombin activation
-
Johnson DJ, Li W, Adams TE, Huntington JA. 2006. Antithrombin-S195A factor Xa-heparin structure reveals the allosteric mechanism of antithrombin activation. EMBO J. 25:2029-2037.
-
(2006)
EMBO J.
, vol.25
, pp. 2029-2037
-
-
Johnson, D.J.1
Li, W.2
Adams, T.E.3
Huntington, J.A.4
-
18
-
-
0031552362
-
Development and validation of a genetic algorithm for flexible docking
-
Jones G, Willett P, Glen RC, Leach AR, Taylor R. 1997. Development and validation of a genetic algorithm for flexible docking. J Mol Biol. 267:727-748.
-
(1997)
J Mol Biol.
, vol.267
, pp. 727-748
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
Leach, A.R.4
Taylor, R.5
-
19
-
-
39049147617
-
GLYCAM06: A generalizable biomolecular force field. Carbohydrates
-
Kirschner KN, Yongye AB, Tschampel SM, Gonzalez-Outeirino J, Daniels CR, Foley BL, Woods RJ. 2008. GLYCAM06: A generalizable biomolecular force field. Carbohydrates. J Comput Chem. 29:622-655.
-
(2008)
J Comput Chem.
, vol.29
, pp. 622-655
-
-
Kirschner, K.N.1
Yongye, A.B.2
Tschampel, S.M.3
Gonzalez-Outeirino, J.4
Daniels, C.R.5
Foley, B.L.6
Woods, R.J.7
-
20
-
-
8844263008
-
Docking and scoring in virtual screening for drug discovery: Methods and applications
-
Kitchen DB, Decornez H, Furr JR, Bajorath J. 2004. Docking and scoring in virtual screening for drug discovery: Methods and applications. Nat Rev Drug Disc. 3:935-949.
-
(2004)
Nat Rev Drug Disc.
, vol.3
, pp. 935-949
-
-
Kitchen, D.B.1
Decornez, H.2
Furr, J.R.3
Bajorath, J.4
-
21
-
-
4344590703
-
Structure of the antithrombin-thrombin-heparin ternary complex reveals the antithrombotic mechanism of heparin
-
Li W, Johnson DJ, Esmon CT, Huntington JA. 2004. Structure of the antithrombin-thrombin-heparin ternary complex reveals the antithrombotic mechanism of heparin. Nat Struct Mol Biol. 11:857-862.
-
(2004)
Nat Struct Mol Biol.
, vol.11
, pp. 857-862
-
-
Li, W.1
Johnson, D.J.2
Esmon, C.T.3
Huntington, J.A.4
-
22
-
-
0025059489
-
Structure of a dermatan sulfate hexasaccharide that binds to heparin cofactor II with high affinity
-
Maimone MM, Tollefsen DM. 1990. Structure of a dermatan sulfate hexasaccharide that binds to heparin cofactor II with high affinity. J Biol Chem. 265:18263-18271.
-
(1990)
J Biol Chem.
, vol.265
, pp. 18263-18271
-
-
Maimone, M.M.1
Tollefsen, D.M.2
-
23
-
-
0037459052
-
Structure of beta-antithrombin and the effect of glycosylation on antithrombin's heparin affinity and activity
-
McCoy AJ, Pei XY, Skinner R, Abrahams JP, Carrell RW. 2003. Structure of beta-antithrombin and the effect of glycosylation on antithrombin's heparin affinity and activity. J Mol Biol. 326:823-833.
-
(2003)
J Mol Biol.
, vol.326
, pp. 823-833
-
-
McCoy, A.J.1
Pei, X.Y.2
Skinner, R.3
Abrahams, J.P.4
Carrell, R.W.5
-
24
-
-
84869073602
-
On the specificity of heparin/heparan sulfate binding to proteins. Anion-binding sites on antithrombin and thrombin are fundamentally different
-
Mosier PD, Krishnasamy C, Kellogg GE, Desai UR. 2012. On the specificity of heparin/heparan sulfate binding to proteins. Anion-binding sites on antithrombin and thrombin are fundamentally different. PLoS ONE. 7:e48632.
-
(2012)
PLoS ONE
, vol.7
, pp. e48632
-
-
Mosier, P.D.1
Krishnasamy, C.2
Kellogg, G.E.3
Desai, U.R.4
-
25
-
-
0033650826
-
Conformation and dynamics of heparin and heparan sulfate
-
Mulloy B, Forster MJ. 2000. Conformation and dynamics of heparin and heparan sulfate. Glycobiology. 10:1147-1156.
-
(2000)
Glycobiology.
, vol.10
, pp. 1147-1156
-
-
Mulloy, B.1
Forster, M.J.2
-
26
-
-
0025730441
-
Quantitative characterization of the thrombin-heparin interaction. Discrimination between specific and nonspecific binding models
-
Olson ST, Halvorson HR, Björk I. 1991. Quantitative characterization of the thrombin-heparin interaction. Discrimination between specific and nonspecific binding models. J Biol Chem. 266:6342-6352.
-
(1991)
J Biol Chem.
, vol.266
, pp. 6342-6352
-
-
Olson, S.T.1
Halvorson, H.R.2
Björk, I.3
-
27
-
-
0031002162
-
A unique trisaccharide sequence in heparin mediates the early step of antithrombin III activation
-
Petitou M, Barzu T, Herault JP, Herbert JM. 1997. A unique trisaccharide sequence in heparin mediates the early step of antithrombin III activation. Glycobiology. 7:323-327.
-
(1997)
Glycobiology.
, vol.7
, pp. 323-327
-
-
Petitou, M.1
Barzu, T.2
Herault, J.P.3
Herbert, J.M.4
-
28
-
-
26244432935
-
Control of the coagulation system by serpins. Getting by with a little help from glycosaminoglycans
-
Pike RN, Buckle AM, le Bonniec BF, Church FC. 2005. Control of the coagulation system by serpins. Getting by with a little help from glycosaminoglycans. FEBS J. 272:4842-4851.
-
(2005)
FEBS J.
, vol.272
, pp. 4842-4851
-
-
Pike, R.N.1
Buckle, A.M.2
Le-Bonniec, B.F.3
Church, F.C.4
-
29
-
-
44249097241
-
Depiction of the forces participating in the 2-O-sulfo-alpha-L-iduronic acid conformational preference in heparin sequences in aqueous solutions
-
Pol-Fachin L, Verli H. 2008. Depiction of the forces participating in the 2-O-sulfo-alpha-L-iduronic acid conformational preference in heparin sequences in aqueous solutions. Carbohydr Res. 343:1435-1445.
-
(2008)
Carbohydr Res.
, vol.343
, pp. 1435-1445
-
-
Pol-Fachin, L.1
Verli, H.2
-
30
-
-
33745119433
-
Finding a needle in a haystack: Development of a combinatorial virtual screening approach for identifying high specificity heparin/heparan sulfate sequence(s)
-
Raghuraman A, Mosier PD, Desai UR. 2006. Finding a needle in a haystack: Development of a combinatorial virtual screening approach for identifying high specificity heparin/heparan sulfate sequence(s). J Med Chem. 49: 3553-3562.
-
(2006)
J Med Chem.
, vol.49
, pp. 3553-3562
-
-
Raghuraman, A.1
Mosier, P.D.2
Desai, U.R.3
-
31
-
-
77956521262
-
Understanding dermatan sulfateheparin cofactor II interaction through virtual library screening
-
Raghuraman A, Mosier PD, Desai UR. 2010. Understanding dermatan sulfateheparin cofactor II interaction through virtual library screening. ACS Med Chem Lett. 1:281-285.
-
(2010)
ACS Med Chem Lett.
, vol.1
, pp. 281-285
-
-
Raghuraman, A.1
Mosier, P.D.2
Desai, U.R.3
-
33
-
-
0028922586
-
LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
-
Wallace AC, Laskowski RA, Thornton JM. 1995. LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions. Protein Eng. 8:127-134.
-
(1995)
Protein Eng.
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
|