-
1
-
-
84919479549
-
Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis
-
Deng X., Shariat N., Driebe E.M., Roe C.C., Tolar B., Trees E., Keim P., Zhang W., Dudley E.G., Fields P.I., et al. Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis. J Clin Microbiol 2015, 53:212-218.
-
(2015)
J Clin Microbiol
, vol.53
, pp. 212-218
-
-
Deng, X.1
Shariat, N.2
Driebe, E.M.3
Roe, C.C.4
Tolar, B.5
Trees, E.6
Keim, P.7
Zhang, W.8
Dudley, E.G.9
Fields, P.I.10
-
2
-
-
84956671235
-
Usefulness of high-quality core genome single-nucleotide variant analysis for subtyping the highly clonal and the most prevalent Salmonella enterica Serovar heidelberg clone in the context of outbreak investigations
-
Bekal S., Berry C., Reimer A.R., Van Domselaar G., Beaudry G., Fournier E., Doualla-Bell F., Levac E., Gaulin C., Ramsay D., et al. Usefulness of high-quality core genome single-nucleotide variant analysis for subtyping the highly clonal and the most prevalent Salmonella enterica Serovar heidelberg clone in the context of outbreak investigations. J Clin Microbiol 2016, 54:289-295.
-
(2016)
J Clin Microbiol
, vol.54
, pp. 289-295
-
-
Bekal, S.1
Berry, C.2
Reimer, A.R.3
Van Domselaar, G.4
Beaudry, G.5
Fournier, E.6
Doualla-Bell, F.7
Levac, E.8
Gaulin, C.9
Ramsay, D.10
-
4
-
-
84956606723
-
Prospective whole-genome sequencing enhances national surveillance of Listeria monocytogenes
-
Kwong J.C., Mercoulia K., Tomita T., Easton M., Li H.Y., Bulach D.M., Stinear T.P., Seemann T., Howden B.P. Prospective whole-genome sequencing enhances national surveillance of Listeria monocytogenes. J Clin Microbiol 2016, 54:333-342.
-
(2016)
J Clin Microbiol
, vol.54
, pp. 333-342
-
-
Kwong, J.C.1
Mercoulia, K.2
Tomita, T.3
Easton, M.4
Li, H.Y.5
Bulach, D.M.6
Stinear, T.P.7
Seemann, T.8
Howden, B.P.9
-
5
-
-
79960609901
-
Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
-
Mellmann A., Harmsen D., Cummings C.A., Zentz E.B., Leopold S.R., Rico A., Prior K., Szczepanowski R., Ji Y., Zhang W., et al. Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS ONE 2011, 6.
-
(2011)
PLoS ONE
, pp. 6
-
-
Mellmann, A.1
Harmsen, D.2
Cummings, C.A.3
Zentz, E.B.4
Leopold, S.R.5
Rico, A.6
Prior, K.7
Szczepanowski, R.8
Ji, Y.9
Zhang, W.10
-
6
-
-
84871702878
-
Public health value of next-generation DNA sequencing of enterohemorrhagic Escherichia coli isolates from an outbreak
-
Underwood A.P., Dallman T., Thomson N.R., Williams M., Harker K., Perry N., Adak B., Willshaw G., Cheasty T., Green J., et al. Public health value of next-generation DNA sequencing of enterohemorrhagic Escherichia coli isolates from an outbreak. J Clin Microbiol 2013, 51:232-237.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 232-237
-
-
Underwood, A.P.1
Dallman, T.2
Thomson, N.R.3
Williams, M.4
Harker, K.5
Perry, N.6
Adak, B.7
Willshaw, G.8
Cheasty, T.9
Green, J.10
-
7
-
-
84929870908
-
Public health investigation of two outbreaks of Shiga toxin-producing Escherichia coli O157 associated with consumption of watercress
-
Jenkins C., Dallman T.J., Launders N., Willis C., Byrne L., Jorgensen F., Eppinger M., Adak G.K., Aird H., Elviss N., et al. Public health investigation of two outbreaks of Shiga toxin-producing Escherichia coli O157 associated with consumption of watercress. Appl Environ Microbiol 2015, 81:3946-3952.
-
(2015)
Appl Environ Microbiol
, vol.81
, pp. 3946-3952
-
-
Jenkins, C.1
Dallman, T.J.2
Launders, N.3
Willis, C.4
Byrne, L.5
Jorgensen, F.6
Eppinger, M.7
Adak, G.K.8
Aird, H.9
Elviss, N.10
-
8
-
-
84941978846
-
Characterization of foodborne outbreaks of Salmonella enterica serovar enteritidis with whole-genome sequencing single nucleotide polymorphism-based analysis for surveillance and outbreak detection
-
Taylor A.J., Lappi V., Wolfgang W.J., Lapierre P., Palumbo M.J., Medus C., Boxrud D. Characterization of foodborne outbreaks of Salmonella enterica serovar enteritidis with whole-genome sequencing single nucleotide polymorphism-based analysis for surveillance and outbreak detection. J Clin Microbiol 2015, 53:3334-3340.
-
(2015)
J Clin Microbiol
, vol.53
, pp. 3334-3340
-
-
Taylor, A.J.1
Lappi, V.2
Wolfgang, W.J.3
Lapierre, P.4
Palumbo, M.J.5
Medus, C.6
Boxrud, D.7
-
9
-
-
84938574900
-
Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157
-
Dallman T.J., Byrne L., Ashton P.M., Cowley L.A., Perry N.T., Adak G., Petrovska L., Ellis R.J., Elson R., Underwood A., et al. Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157. Clin Infect Dis 2015, 61:305-312.
-
(2015)
Clin Infect Dis
, vol.61
, pp. 305-312
-
-
Dallman, T.J.1
Byrne, L.2
Ashton, P.M.3
Cowley, L.A.4
Perry, N.T.5
Adak, G.6
Petrovska, L.7
Ellis, R.J.8
Elson, R.9
Underwood, A.10
-
10
-
-
84901610271
-
Whole genome sequencing as a tool to investigate a cluster of seven cases of listeriosis in Austria and Germany, 2011-2013
-
Schmid D., Allerberger F., Huhulescu S., Pietzka A., Amar C., Kleta S., Prager R., Preußel K., Aichinger E., Mellmann A. Whole genome sequencing as a tool to investigate a cluster of seven cases of listeriosis in Austria and Germany, 2011-2013. Clin Microbiol Infect 2014, 20:431-436.
-
(2014)
Clin Microbiol Infect
, vol.20
, pp. 431-436
-
-
Schmid, D.1
Allerberger, F.2
Huhulescu, S.3
Pietzka, A.4
Amar, C.5
Kleta, S.6
Prager, R.7
Preußel, K.8
Aichinger, E.9
Mellmann, A.10
-
11
-
-
84862792042
-
High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach
-
Allard M.W., Luo Y., Strain E., Li C., Keys C.E., Son I., Stones R., Musser S.M., Brown E.W. High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach. BMC Genomics 2012, 13.
-
(2012)
BMC Genomics
, pp. 13
-
-
Allard, M.W.1
Luo, Y.2
Strain, E.3
Li, C.4
Keys, C.E.5
Son, I.6
Stones, R.7
Musser, S.M.8
Brown, E.W.9
-
12
-
-
84905223467
-
Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar Enteritidis
-
den Bakker H.C., Allard M.W., Bopp D., Brown E.W., Fontana J., Iqbal Z., Kinney A., Limberger R., Musser K.A., Shudt M., et al. Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar Enteritidis. Emerg Infect Dis 2014, 20:1306-1314.
-
(2014)
Emerg Infect Dis
, vol.20
, pp. 1306-1314
-
-
den Bakker, H.C.1
Allard, M.W.2
Bopp, D.3
Brown, E.W.4
Fontana, J.5
Iqbal, Z.6
Kinney, A.7
Limberger, R.8
Musser, K.A.9
Shudt, M.10
-
13
-
-
84876558380
-
AGP: a multi-methods web server for alignment-free genome phylogeny
-
Cheng J., Cao F., Liu Z. AGP: a multi-methods web server for alignment-free genome phylogeny. Mol Biol Evol 2013, 30:1032-1037.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 1032-1037
-
-
Cheng, J.1
Cao, F.2
Liu, Z.3
-
14
-
-
84878802119
-
SnpTree - a web-server to identify and construct SNP trees from whole genome sequence data
-
Leekitcharoenphon P., Kaas R.S., Thomsen M.C., Friis C., Rasmussen S., Aarestrup F.M. snpTree - a web-server to identify and construct SNP trees from whole genome sequence data. BMC Genomics 2012, 13(Suppl. 7).
-
(2012)
BMC Genomics
, vol.13
-
-
Leekitcharoenphon, P.1
Kaas, R.S.2
Thomsen, M.C.3
Friis, C.4
Rasmussen, S.5
Aarestrup, F.M.6
-
15
-
-
84895096959
-
Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica
-
Leekitcharoenphon P., Nielsen E.M., Kaas R.S., Lund O., Aarestrup F.M. Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. PLOS ONE 2014, 9.
-
(2014)
PLOS ONE
, pp. 9
-
-
Leekitcharoenphon, P.1
Nielsen, E.M.2
Kaas, R.S.3
Lund, O.4
Aarestrup, F.M.5
-
16
-
-
84863322057
-
A gene-by-gene approach to bacterial population genomics: whole genome MLST of Campylobacter
-
Sheppard S.K., Jolley K.A., Maiden M.C.J. A gene-by-gene approach to bacterial population genomics: whole genome MLST of Campylobacter. Genes 2012, 3:261-277.
-
(2012)
Genes
, vol.3
, pp. 261-277
-
-
Sheppard, S.K.1
Jolley, K.A.2
Maiden, M.C.J.3
-
17
-
-
84940043454
-
Defining and evaluating a core genome multilocus sequence typing scheme for whole-genome sequence-based typing of Listeria monocytogenes
-
Ruppitsch W., Pietzka A., Prior K., Bletz S., Fernandez H.L., Allerberger F., Harmsen D., Mellmann A. Defining and evaluating a core genome multilocus sequence typing scheme for whole-genome sequence-based typing of Listeria monocytogenes. J Clin Microbiol 2015, 53:2869-2876.
-
(2015)
J Clin Microbiol
, vol.53
, pp. 2869-2876
-
-
Ruppitsch, W.1
Pietzka, A.2
Prior, K.3
Bletz, S.4
Fernandez, H.L.5
Allerberger, F.6
Harmsen, D.7
Mellmann, A.8
-
18
-
-
84945178887
-
The Listeria monocytogenes core-genome sequence typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data
-
Pightling A.W., Petronella N., Pagotto F. The Listeria monocytogenes core-genome sequence typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data. BMC Microbiol 2015, 15.
-
(2015)
BMC Microbiol
, pp. 15
-
-
Pightling, A.W.1
Petronella, N.2
Pagotto, F.3
-
19
-
-
84940755707
-
KSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome
-
Gardner S.N., Slezak T., Hall B.G. kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome. Bioinformatics 2015, 31:2877-2878.
-
(2015)
Bioinformatics
, vol.31
, pp. 2877-2878
-
-
Gardner, S.N.1
Slezak, T.2
Hall, B.G.3
-
20
-
-
84953839010
-
Effects of sequence diversity and recombination on the accuracy of phylogenetic trees estimated by kSNP
-
Hall B.G. Effects of sequence diversity and recombination on the accuracy of phylogenetic trees estimated by kSNP. Cladistics 2016, 32:90-99.
-
(2016)
Cladistics
, vol.32
, pp. 90-99
-
-
Hall, B.G.1
-
21
-
-
84902315623
-
SuperPhy: a pilot resource for integrated phylogenetic and epidemiological analysis of pathogens
-
Whiteside M.D., Laing C.R., Manji A., Gannon V.P.J. SuperPhy: a pilot resource for integrated phylogenetic and epidemiological analysis of pathogens. BIOINFORMATICS 2014 - Proceedings of 5th Int. Conf. on Bioinformatics Models, Methods and Algorithms; Part of 7th Int. Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2014 2014, 40-48.
-
(2014)
BIOINFORMATICS 2014 - Proceedings of 5th Int. Conf. on Bioinformatics Models, Methods and Algorithms; Part of 7th Int. Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2014
, pp. 40-48
-
-
Whiteside, M.D.1
Laing, C.R.2
Manji, A.3
Gannon, V.P.J.4
-
22
-
-
84877981999
-
MIST: a tool for rapid in silico generation of molecular data from bacterial genome sequences
-
Kruczkiewicz P., Mutschall S., Barker D., Thomas J., Van Domselaar G., Gannon V.P.J., Carrillo C.D., Taboada E.N. MIST: a tool for rapid in silico generation of molecular data from bacterial genome sequences. BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms 2013, 316-323.
-
(2013)
BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms
, pp. 316-323
-
-
Kruczkiewicz, P.1
Mutschall, S.2
Barker, D.3
Thomas, J.4
Van Domselaar, G.5
Gannon, V.P.J.6
Carrillo, C.D.7
Taboada, E.N.8
-
23
-
-
84929501297
-
GeneSippr: a rapid whole-genome approach for the identification and characterization of foodborne pathogens such as priority Shiga toxigenic Escherichia coli
-
Lambert D., Carrillo C.D., Koziol A.G., Manninger P., Blais B.W. GeneSippr: a rapid whole-genome approach for the identification and characterization of foodborne pathogens such as priority Shiga toxigenic Escherichia coli. PLOS ONE 2015, 10.
-
(2015)
PLOS ONE
, pp. 10
-
-
Lambert, D.1
Carrillo, C.D.2
Koziol, A.G.3
Manninger, P.4
Blais, B.W.5
-
24
-
-
84905843066
-
Solving the problem of comparing whole bacterial genomes across different sequencing platforms
-
Kaas R.S., Leekitcharoenphon P., Aarestrup F.M., Lund O. Solving the problem of comparing whole bacterial genomes across different sequencing platforms. PLOS ONE 2014, 9.
-
(2014)
PLOS ONE
, pp. 9
-
-
Kaas, R.S.1
Leekitcharoenphon, P.2
Aarestrup, F.M.3
Lund, O.4
-
25
-
-
84858600509
-
Multilocus sequence typing of total-genome-sequenced bacteria
-
Larsen M.V., Cosentino S., Rasmussen S., Friis C., Hasman H., Marvig R.L., Jelsbak L., Sicheritz-Pontén T., Ussery D.W., Aarestrup F.M., et al. Multilocus sequence typing of total-genome-sequenced bacteria. J Clin Microbiol 2012, 50:1355-1361.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 1355-1361
-
-
Larsen, M.V.1
Cosentino, S.2
Rasmussen, S.3
Friis, C.4
Hasman, H.5
Marvig, R.L.6
Jelsbak, L.7
Sicheritz-Pontén, T.8
Ussery, D.W.9
Aarestrup, F.M.10
-
26
-
-
84899573966
-
Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli
-
Joensen K.G., Scheutz F., Lund O., Hasman H., Kaas R.S., Nielsen E.M., Aarestrup F.M. Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli. J Clin Microbiol 2014, 52:1501-1510.
-
(2014)
J Clin Microbiol
, vol.52
, pp. 1501-1510
-
-
Joensen, K.G.1
Scheutz, F.2
Lund, O.3
Hasman, H.4
Kaas, R.S.5
Nielsen, E.M.6
Aarestrup, F.M.7
-
27
-
-
84938071260
-
Rapid and easy in silico serotyping of Escherichia coli isolates by use of whole-genome sequencing data
-
Joensen K.G., Tetzschner A.M.M., Iguchi A., Aarestrup F.M., Scheutz F. Rapid and easy in silico serotyping of Escherichia coli isolates by use of whole-genome sequencing data. J Clin Microbiol 2015, 53:2410-2426.
-
(2015)
J Clin Microbiol
, vol.53
, pp. 2410-2426
-
-
Joensen, K.G.1
Tetzschner, A.M.M.2
Iguchi, A.3
Aarestrup, F.M.4
Scheutz, F.5
-
28
-
-
84867587461
-
Identification of acquired antimicrobial resistance genes
-
Zankari E., Hasman H., Cosentino S., Vestergaard M., Rasmussen S., Lund O., Aarestrup F.M., Larsen M.V. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother 2012, 67:2640-2644.
-
(2012)
J Antimicrob Chemother
, vol.67
, pp. 2640-2644
-
-
Zankari, E.1
Hasman, H.2
Cosentino, S.3
Vestergaard, M.4
Rasmussen, S.5
Lund, O.6
Aarestrup, F.M.7
Larsen, M.V.8
-
29
-
-
84928034064
-
Salmonella serotype determination utilizing high-throughput genome sequencing data
-
Zhang S., Yin Y., Jones M.B., Zhang Z., Kaiser B.L.D., Dinsmore B.A., Fitzgerald C., Fields P.I., Deng X. Salmonella serotype determination utilizing high-throughput genome sequencing data. J Clin Microbiol 2015, 53:1685-1692.
-
(2015)
J Clin Microbiol
, vol.53
, pp. 1685-1692
-
-
Zhang, S.1
Yin, Y.2
Jones, M.B.3
Zhang, Z.4
Kaiser, B.L.D.5
Dinsmore, B.A.6
Fitzgerald, C.7
Fields, P.I.8
Deng, X.9
-
30
-
-
84958212710
-
The Salmonella in silico typing resource (SISTR): an open web-accessible tool for rapidly typing and subtyping draft Salmonella genome assemblies
-
11:e0147101
-
Yoshida C.E., Kruczkiewicz P., Laing C.R., Lingohr E.J., Gannon V.P., Nash J.H., Taboada E.N. The Salmonella in silico typing resource (SISTR): an open web-accessible tool for rapidly typing and subtyping draft Salmonella genome assemblies. PLOS ONE 2016, 11. 11:e0147101.
-
(2016)
PLOS ONE
, vol.11
-
-
Yoshida, C.E.1
Kruczkiewicz, P.2
Laing, C.R.3
Lingohr, E.J.4
Gannon, V.P.5
Nash, J.H.6
Taboada, E.N.7
-
31
-
-
77956552653
-
Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions
-
Laing C., Buchanan C., Taboada E.N., Zhang Y., Kropinski A., Villegas A., Thomas J.E., Gannon V.P.J. Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions. BMC Bioinformatics 2010, 11.
-
(2010)
BMC Bioinformatics
, pp. 11
-
-
Laing, C.1
Buchanan, C.2
Taboada, E.N.3
Zhang, Y.4
Kropinski, A.5
Villegas, A.6
Thomas, J.E.7
Gannon, V.P.J.8
-
32
-
-
67650742212
-
Attributing the human disease burden of foodborne infections to specific sources
-
Pires S.M., Evers E.G., Van Pelt W., Ayers T., Scallan E., Angulo F.J., Havelaar A., Hald T., Schroeter A., Brisabois A., et al. Attributing the human disease burden of foodborne infections to specific sources. Foodborne Pathog Dis 2009, 6:417-424.
-
(2009)
Foodborne Pathog Dis
, vol.6
, pp. 417-424
-
-
Pires, S.M.1
Evers, E.G.2
Van Pelt, W.3
Ayers, T.4
Scallan, E.5
Angulo, F.J.6
Havelaar, A.7
Hald, T.8
Schroeter, A.9
Brisabois, A.10
-
33
-
-
84876054517
-
Salmonella source attribution based on microbial subtyping
-
Barco L., Barrucci F., Olsen J.E., Ricci A. Salmonella source attribution based on microbial subtyping. Int J Food Microbiol 2013, 163:193-203.
-
(2013)
Int J Food Microbiol
, vol.163
, pp. 193-203
-
-
Barco, L.1
Barrucci, F.2
Olsen, J.E.3
Ricci, A.4
-
34
-
-
85049633466
-
Scientific opinion on the evaluation of molecular typing methods for major food-borne microbiological hazards and their use for attribution modelling, outbreak investigation and scanning surveillance: Part 1 (evaluation of methods and applications)
-
EFSA Scientific opinion on the evaluation of molecular typing methods for major food-borne microbiological hazards and their use for attribution modelling, outbreak investigation and scanning surveillance: Part 1 (evaluation of methods and applications). FSA J 2013, 11:3502.
-
(2013)
FSA J
, vol.11
, pp. 3502
-
-
-
35
-
-
84897072775
-
Attribution of human Salmonella infections to animal and food sources in Italy (2002-2010): adaptations of the Dutch and modified Hald source attribution models
-
Mughini-Gras L., Barrucci F., Smid J.H., Graziani C., Luzzi I., Ricci A., Barco L., Rosmini R., Havelaar A.H., Van Pelt W., et al. Attribution of human Salmonella infections to animal and food sources in Italy (2002-2010): adaptations of the Dutch and modified Hald source attribution models. Epidemiol Infect 2014, 142:1070-1082.
-
(2014)
Epidemiol Infect
, vol.142
, pp. 1070-1082
-
-
Mughini-Gras, L.1
Barrucci, F.2
Smid, J.H.3
Graziani, C.4
Luzzi, I.5
Ricci, A.6
Barco, L.7
Rosmini, R.8
Havelaar, A.H.9
Van Pelt, W.10
-
36
-
-
1442354765
-
A Bayesian approach to quantify the contribution of animal-food sources to human salmonellosis
-
Hald T., Vose D., Wegener H.C., Koupeev T. A Bayesian approach to quantify the contribution of animal-food sources to human salmonellosis. Risk Anal 2004, 24:255-269.
-
(2004)
Risk Anal
, vol.24
, pp. 255-269
-
-
Hald, T.1
Vose, D.2
Wegener, H.C.3
Koupeev, T.4
-
37
-
-
67650407682
-
Source attribution of food-borne zoonoses in New Zealand: a modified hald model
-
Mullner P., Jones G., Noble A., Spencer S.E.F., Hathaway S., French N.P. Source attribution of food-borne zoonoses in New Zealand: a modified hald model. Risk Anal 2009, 29:970-984.
-
(2009)
Risk Anal
, vol.29
, pp. 970-984
-
-
Mullner, P.1
Jones, G.2
Noble, A.3
Spencer, S.E.F.4
Hathaway, S.5
French, N.P.6
-
38
-
-
84895183022
-
Risk factors for human salmonellosis originating from pigs, cattle, broiler chickens and egg laying hens: a combined case-control and source attribution analysis
-
Mughini-Gras L., Enserink R., Friesema I., Heck M., Van Duynhoven Y., Van Pelt W. Risk factors for human salmonellosis originating from pigs, cattle, broiler chickens and egg laying hens: a combined case-control and source attribution analysis. PLOS ONE 2014, 9.
-
(2014)
PLOS ONE
, pp. 9
-
-
Mughini-Gras, L.1
Enserink, R.2
Friesema, I.3
Heck, M.4
Van Duynhoven, Y.5
Van Pelt, W.6
-
39
-
-
84960505311
-
Rapid host switching in generalist Campylobacter strains erodes the signal for tracing human infections
-
Dearlove B.L., Cody A.J., Pascoe B., Méric G., Wilson D.J., Sheppard S.K. Rapid host switching in generalist Campylobacter strains erodes the signal for tracing human infections. ISME J 2015.
-
(2015)
ISME J
-
-
Dearlove, B.L.1
Cody, A.J.2
Pascoe, B.3
Méric, G.4
Wilson, D.J.5
Sheppard, S.K.6
-
40
-
-
65649154619
-
Attribution of campylobacter infections in northeast Scotland to specific sources by use of multilocus sequence typing
-
Strachan N.J.C., Gormley F.J., Rotariu O., Ogden I.D., Miller G., Dunn G.M., Sheppard S.K., Dallas J.F., Reid T.M.S., Howie H., et al. Attribution of campylobacter infections in northeast Scotland to specific sources by use of multilocus sequence typing. J Infect Dis 2009, 199:1205-1208.
-
(2009)
J Infect Dis
, vol.199
, pp. 1205-1208
-
-
Strachan, N.J.C.1
Gormley, F.J.2
Rotariu, O.3
Ogden, I.D.4
Miller, G.5
Dunn, G.M.6
Sheppard, S.K.7
Dallas, J.F.8
Reid, T.M.S.9
Howie, H.10
-
41
-
-
52949148195
-
Tracing the source of campylobacteriosis
-
Wilson D.J., Gabriel E., Leatherbarrow A.J.H., Cheesbrough J., Gee S., Bolton E., Fox A., Fearnhead P., Hart C.A., Diggle P.J. Tracing the source of campylobacteriosis. PLoS Genet 2008, 4.
-
(2008)
PLoS Genet
, pp. 4
-
-
Wilson, D.J.1
Gabriel, E.2
Leatherbarrow, A.J.H.3
Cheesbrough, J.4
Gee, S.5
Bolton, E.6
Fox, A.7
Fearnhead, P.8
Hart, C.A.9
Diggle, P.J.10
-
42
-
-
84908509940
-
Tracing the sources of human salmonellosis: a multi-model comparison of phenotyping and genotyping methods
-
Mughini-Gras L., Smid J., Enserink R., Franz E., Schouls L., Heck M., van Pelt W. Tracing the sources of human salmonellosis: a multi-model comparison of phenotyping and genotyping methods. Infect Genet Evol 2014, 28:251-260.
-
(2014)
Infect Genet Evol
, vol.28
, pp. 251-260
-
-
Mughini-Gras, L.1
Smid, J.2
Enserink, R.3
Franz, E.4
Schouls, L.5
Heck, M.6
van Pelt, W.7
-
43
-
-
84880366261
-
Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter
-
Sheppard S.K., Didelot X., Meric G., Torralbo A., Jolley K.A., Kelly D.J., Bentley S.D., Maiden M.C.J., Parkhill J., Falush D. Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter. Proc Natl Acad Sci U S A 2013, 110:11923-11927.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 11923-11927
-
-
Sheppard, S.K.1
Didelot, X.2
Meric, G.3
Torralbo, A.4
Jolley, K.A.5
Kelly, D.J.6
Bentley, S.D.7
Maiden, M.C.J.8
Parkhill, J.9
Falush, D.10
-
44
-
-
84943258770
-
Whole genome sequencing demonstrates that geographic variation of Escherichia coli O157 genotypes dominates host association
-
Strachan N.J.C., Rotariu O., Lopes B., Macrae M., Fairley S., Laing C., Gannon V., Allison L.J., Hanson M.F., Dallman T., et al. Whole genome sequencing demonstrates that geographic variation of Escherichia coli O157 genotypes dominates host association. Sci Rep 2015, 5.
-
(2015)
Sci Rep
, pp. 5
-
-
Strachan, N.J.C.1
Rotariu, O.2
Lopes, B.3
Macrae, M.4
Fairley, S.5
Laing, C.6
Gannon, V.7
Allison, L.J.8
Hanson, M.F.9
Dallman, T.10
-
45
-
-
84925609213
-
Molecular hazard identification of non-O157 Shiga toxin-producing Escherichia coli (STEC)
-
Franz E., Van Hoek A.H.A.M., Wuite M., Van Der Wal F.J., De Boer A.G., Bouw E.I., Aarts H.J.M. Molecular hazard identification of non-O157 Shiga toxin-producing Escherichia coli (STEC). PLOS ONE 2015, 10.
-
(2015)
PLOS ONE
, pp. 10
-
-
Franz, E.1
Van Hoek, A.H.A.M.2
Wuite, M.3
Van Der Wal, F.J.4
De Boer, A.G.5
Bouw, E.I.6
Aarts, H.J.M.7
-
46
-
-
84943661595
-
First step in using molecular data for microbial food safety risk assessment; hazard identification of Escherichia coli O157: H7 by coupling genomic data with in vitro adherence to human epithelial cells
-
Pielaat A., Boer M.P., Wijnands L.M., van Hoek A.H.A.M., Bouw E., Barker G.C., Teunis P.F.M., Aarts H.J.M., Franz E. First step in using molecular data for microbial food safety risk assessment; hazard identification of Escherichia coli O157: H7 by coupling genomic data with in vitro adherence to human epithelial cells. Int J Food Microbiol 2015, 213:130-138.
-
(2015)
Int J Food Microbiol
, vol.213
, pp. 130-138
-
-
Pielaat, A.1
Boer, M.P.2
Wijnands, L.M.3
van Hoek, A.H.A.M.4
Bouw, E.5
Barker, G.C.6
Teunis, P.F.M.7
Aarts, H.J.M.8
Franz, E.9
-
47
-
-
33746556194
-
Genome-wide association mapping in bacteria?
-
Falush D., Bowden R. Genome-wide association mapping in bacteria?. Trends Microbiol 2006, 14:353-355.
-
(2006)
Trends Microbiol
, vol.14
, pp. 353-355
-
-
Falush, D.1
Bowden, R.2
-
48
-
-
84949239443
-
Enhanced biofilm formation and multi-host transmission evolve from divergent genetic backgrounds in Campylobacter jejuni
-
Pascoe B., Méric G., Murray S., Yahara K., Mageiros L., Bowen R., Jones N.H., Jeeves R.E., Lappin-Scott H.M., Asakura H., et al. Enhanced biofilm formation and multi-host transmission evolve from divergent genetic backgrounds in Campylobacter jejuni. Environ Microbiol 2015, 17:4779-4789.
-
(2015)
Environ Microbiol
, vol.17
, pp. 4779-4789
-
-
Pascoe, B.1
Méric, G.2
Murray, S.3
Yahara, K.4
Mageiros, L.5
Bowen, R.6
Jones, N.H.7
Jeeves, R.E.8
Lappin-Scott, H.M.9
Asakura, H.10
-
49
-
-
84931260339
-
Diversity of acid stress resistant variants of Listeria monocytogenes and the potential role of ribosomal protein S21 encoded by rpsU
-
Metselaar K.I., den Besten H.M.W., Boekhorst J., van Hijum S.A.F.T., Zwietering M.H., Abee T. Diversity of acid stress resistant variants of Listeria monocytogenes and the potential role of ribosomal protein S21 encoded by rpsU. Front Microbiol 2015, 6.
-
(2015)
Front Microbiol
, pp. 6
-
-
Metselaar, K.I.1
den Besten, H.M.W.2
Boekhorst, J.3
van Hijum, S.A.F.T.4
Zwietering, M.H.5
Abee, T.6
-
50
-
-
84953860779
-
The connection between persistent, disinfectant-resistant Listeria monocytogenes strains from two geographically separate Iberian pork processing plants: evidence from comparative genome analysis
-
Ortiz S., López-Alonso V., Rodríguez P., Martínez-Suárez J.V. The connection between persistent, disinfectant-resistant Listeria monocytogenes strains from two geographically separate Iberian pork processing plants: evidence from comparative genome analysis. Appl Environ Microbiol 2016, 82:308-317.
-
(2016)
Appl Environ Microbiol
, vol.82
, pp. 308-317
-
-
Ortiz, S.1
López-Alonso, V.2
Rodríguez, P.3
Martínez-Suárez, J.V.4
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