-
1
-
-
84857542145
-
Escherichia coli O104:H4 infections and international travel
-
PMID: 22377016
-
Alexander, D. C., Hao, W., Gilmour, M. W., Zittermann, S., Sarabia, A., Melano, R. G., Peralta, A., Lombos, M., Warren, K., Amatnieks, Y., Virey, E., Ma, J. H., Jamieson, F. B., Low, D. E., and Allen, V. G. (2012). Escherichia coli O104:H4 infections and international travel. Emerging Infectious Diseases, 18(3):473-476. PMID: 22377016.
-
(2012)
Emerging Infectious Diseases
, vol.18
, Issue.3
, pp. 473-476
-
-
Alexander, D.C.1
Hao, W.2
Gilmour, M.W.3
Zittermann, S.4
Sarabia, A.5
Melano, R.G.6
Peralta, A.7
Lombos, M.8
Warren, K.9
Amatnieks, Y.10
Virey, E.11
Ma, J.H.12
Jamieson, F.B.13
Low, D.E.14
Allen, V.G.15
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. (1990). Basic local alignment search tool. Journal of Molecular Biology, 215(3):403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
34548494823
-
Pathotyping escherichia coli by using miniaturized DNA microarrays
-
Anjum, M. F., Mafura, M., Slickers, P., Ballmer, K., Kuh-nert, P., Woodward, M. J., and Ehricht, R. (2007). Pathotyping Escherichia coli by using miniaturized DNA microarrays. Applied and Environmental Microbiology, 73(17):5692-5697.
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.17
, pp. 5692-5697
-
-
Anjum, M.F.1
Mafura, M.2
Slickers, P.3
Ballmer, K.4
Kuh-Nert, P.5
Woodward, M.J.6
Ehricht, R.7
-
4
-
-
74049108922
-
BLAST+: Architecture and applications
-
PMID: 20003500
-
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., and Madden, T. L. (2009). BLAST+: architecture and applications. BMC Bioinformatics, 10:421. PMID: 20003500.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
Coulouris, G.2
Avagyan, V.3
Ma, N.4
Papadopoulos, J.5
Bealer, K.6
Madden, T.L.7
-
5
-
-
84877962130
-
A framework for assessing the concordance of molecular typing methods and the true strain phylogeny of Campylobacter jejuni and C. Coli using draft genome sequence data
-
Carrillo, C. D., Kruczkiewicz, P., Mutschall, S., Tudor, A., Clark, C., and Taboada, E. N. (2012). A framework for assessing the concordance of molecular typing methods and the true strain phylogeny of Campylobacter jejuni and C. coli using draft genome sequence data. Frontiers in Cellular and Infection Microbiology, 2:57.
-
(2012)
Frontiers in Cellular and Infection Microbiology
, vol.2
, pp. 57
-
-
Carrillo, C.D.1
Kruczkiewicz, P.2
Mutschall, S.3
Tudor, A.4
Clark, C.5
Taboada, E.N.6
-
6
-
-
0034005677
-
Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus
-
Enright, M. C., Day, N. P. J., Davies, C. E., Peacock, S. J., and Spratt, B. G. (2000). Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureus. Journal of Clinical Microbiology, 38(3):1008- 1015.
-
(2000)
Journal of Clinical Microbiology
, vol.38
, Issue.3
, pp. 1008-1015
-
-
Enright, M.C.1
Day, N.P.J.2
Davies, C.E.3
Peacock, S.J.4
Spratt, B.G.5
-
7
-
-
0035876033
-
Molecular epidemiology: Focus on infection
-
PMID: 11415945
-
Foxman, B. and Riley, L. (2001). Molecular epidemiology: focus on infection. American Journal of Epidemiology, 153(12):1135-1141. PMID: 11415945.
-
(2001)
American Journal of Epidemiology
, vol.153
, Issue.12
, pp. 1135-1141
-
-
Foxman, B.1
Riley, L.2
-
8
-
-
77949463821
-
High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak
-
Gilmour, M. W., Graham, M., Domselaar, G. V., Tyler, S., Kent, H., Trout-Yakel, K. M., Larios, O., Allen, V., Lee, B., and Nadon, C. (2010). High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak. BMC Genomics, 11(1):120.
-
(2010)
BMC Genomics
, vol.11
, Issue.1
, pp. 120
-
-
Gilmour, M.W.1
Graham, M.2
Domselaar, G.V.3
Tyler, S.4
Kent, H.5
Trout-Yakel, K.M.6
Larios, O.7
Allen, V.8
Lee, B.9
Nadon, C.10
-
9
-
-
13244267001
-
Mlstdb- Net- distributed multi-locus sequence typing (MLST) databases
-
PMID: 15230973 PMCID: 459212
-
Jolley, K. A., Chan, M., and Maiden, M. C. (2004). mlstdb- Net - distributed multi-locus sequence typing (MLST) databases. BMC Bioinformatics, 5:86-86. PMID: 15230973 PMCID: 459212.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 86-86
-
-
Jolley, K.A.1
Chan, M.2
Maiden, M.C.3
-
10
-
-
78650827616
-
BIGSdb: Scalable analysis of bacterial genome variation at the population level
-
PMID: 21143983
-
Jolley, K. A. and Maiden, M. C. J. (2010). BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics, 11:595. PMID: 21143983.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 595
-
-
Jolley, K.A.1
Maiden, M.C.J.2
-
11
-
-
84858600509
-
Multilocus sequence typing of total-genomesequenced bacteria
-
PMID: 22238442
-
Larsen, M. V., Cosentino, S., Rasmussen, S., Friis, C., Hasman, H., Marvig, R. L., Jelsbak, L., Sicheritz-Pont́en, T., Ussery, D. W., Aarestrup, F. M., and Lund, O. (2012). Multilocus sequence typing of total-genomesequenced bacteria. Journal of Clinical Microbiology, 50(4):1355-1361. PMID: 22238442.
-
(2012)
Journal of Clinical Microbiology
, vol.50
, Issue.4
, pp. 1355-1361
-
-
Larsen, M.V.1
Cosentino, S.2
Rasmussen, S.3
Friis, C.4
Hasman, H.5
Marvig, R.L.6
Jelsbak, L.7
Sicheritz-Pont́en, T.8
Ussery, D.W.9
Aarestrup, F.M.10
Lund, O.11
-
12
-
-
68149131058
-
Bacterial strain typing in the genomic era
-
PMID: 19453749
-
Li, W., Raoult, D., and Fournier, P. (2009). Bacterial strain typing in the genomic era. FEMS Microbiology Reviews, 33(5):892-916. PMID: 19453749.
-
(2009)
FEMS Microbiology Reviews
, vol.33
, Issue.5
, pp. 892-916
-
-
Li, W.1
Raoult, D.2
Fournier, P.3
-
13
-
-
43649100576
-
Development of a multilocus variable-number of tandem repeat typing method for Listeria monocytogenes serotype 4b strains
-
PMID: 18457891
-
Miya, S., Kimura, B., Sato, M., Takahashi, H., Ishikawa, T., Suda, T., Takakura, C., Fujii, T., and Wiedmann, M. (2008). Development of a multilocus variable-number of tandem repeat typing method for Listeria monocytogenes serotype 4b strains. International Journal of Food Microbiology, 124(3):239-249. PMID: 18457891.
-
(2008)
International Journal of Food Microbiology
, vol.124
, Issue.3
, pp. 239-249
-
-
Miya, S.1
Kimura, B.2
Sato, M.3
Takahashi, H.4
Ishikawa, T.5
Suda, T.6
Takakura, C.7
Fujii, T.8
Wiedmann, M.9
-
14
-
-
33746553346
-
Application of molecular techniques to the study of hospital infection
-
Singh, A., Goering, R. V., Simjee, S., Foley, S. L., and Zervos, M. J. (2006). Application of molecular techniques to the study of hospital infection. Clinical Microbiology Reviews, 19(3):512-530.
-
(2006)
Clinical Microbiology Reviews
, vol.19
, Issue.3
, pp. 512-530
-
-
Singh, A.1
Goering, R.V.2
Simjee, S.3
Foley, S.L.4
Zervos, M.J.5
-
15
-
-
0035351051
-
PulseNet: The molecular subtyping network for foodborne bacterial disease surveillance, united states
-
PMID: 11384513
-
Swaminathan, B., Barrett, T. J., Hunter, S. B., and Tauxe, R. V. (2001). PulseNet: the molecular subtyping network for foodborne bacterial disease surveillance, united states. Emerging Infectious Diseases, 7(3):382-389. PMID: 11384513.
-
(2001)
Emerging Infectious Diseases
, vol.7
, Issue.3
, pp. 382-389
-
-
Swaminathan, B.1
Barrett, T.J.2
Hunter, S.B.3
Tauxe, R.V.4
-
16
-
-
84863393645
-
Development and validation of a comparative genomic fingerprinting method for highresolution genotyping of Campylobacter jejuni
-
PMID: 22170908
-
Taboada, E. N., Ross, S. L., Mutschall, S. K., Mackinnon, J. M., Roberts, M. J., Buchanan, C. J., Kruczkiewicz, P., Jokinen, C. C., Thomas, J. E., Nash, J. H. E., Gannon, V. P. J., Marshall, B., Pollari, F., and Clark, C. G. (2012). Development and validation of a comparative genomic fingerprinting method for highresolution genotyping of Campylobacter jejuni. Journal of Clinical Microbiology, 50(3):788-797. PMID: 22170908.
-
(2012)
Journal of Clinical Microbiology
, vol.50
, Issue.3
, pp. 788-797
-
-
Taboada, E.N.1
Ross, S.L.2
Mutschall, S.K.3
Mackinnon, J.M.4
Roberts, M.J.5
Buchanan, C.J.6
Kruczkiewicz, P.7
Jokinen, C.C.8
Thomas, J.E.9
Nash, J.H.E.10
Gannon, V.P.J.11
Marshall, B.12
Pollari, F.13
Clark, C.G.14
-
17
-
-
0038414878
-
High-throughput epidemiologic typing in clinical microbiology
-
van Belkum, A. (2003). High-throughput epidemiologic typing in clinical microbiology. Clinical Microbiology and Infection, 9(2):86-100.
-
(2003)
Clinical Microbiology and Infection
, vol.9
, Issue.2
, pp. 86-100
-
-
Van Belkum, A.1
-
18
-
-
84862093048
-
Ion torrent personal genome machine sequencing for genomic typing of neisseria meningitidis for rapid determination of multiple layers of typing information
-
Vogel, U., Szczepanowski, R., Claus, H., J̈unemann, S., Prior, K., and Harmsen, D. (2012). Ion torrent personal genome machine sequencing for genomic typing of Neisseria Meningitidis for rapid determination of multiple layers of typing information. Journal of Clinical Microbiology, 50(6):1889-1894.
-
(2012)
Journal of Clinical Microbiology
, vol.50
, Issue.6
, pp. 1889-1894
-
-
Vogel, U.1
Szczepanowski, R.2
Claus, H.3
J̈unemann, S.4
Prior, K.5
Harmsen, D.6
-
19
-
-
78049256317
-
A targeted multilocus genotyping assay for lineage, serogroup, and epidemic clone typing of Listeria monocytogenes
-
Ward, T. J., Usgaard, T., and Evans, P. (2010). A targeted multilocus genotyping assay for lineage, serogroup, and epidemic clone typing of Listeria monocytogenes. Appl. Environ. Microbiol., 76(19):6680-6684.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, Issue.19
, pp. 6680-6684
-
-
Ward, T.J.1
Usgaard, T.2
Evans, P.3
|