Usefulness of high-quality core genome single-nucleotide variant analysis for subtyping the highly clonal and the most prevalent Salmonella enterica Serovar heidelberg clone in the context of outbreak investigations

Journal of Clinical Microbiology

Volumn 54, Issue 2, 2016, Pages 289-295

  Bekal, S ^a,b   Berry, C ^c   Reimer, A R ^c   Van Domselaar, G ^c   Beaudry, G ^a   Fournier, E ^a   Doualla Bell, F ^a,d   Levac, E ^e   Gaulin, C ^f   Ramsay, D ^e   Huot, C ^e   Walker, M ^c   Sieffert, C ^c   Tremblay, C ^a,b  

^a INSTITUT NATIONAL DE SANTÉ PUBLIQUE DU QUÉBEC   (Canada)

^b UNIVERSITÉ DE MONTRÉAL   (Canada)

^c PUBLIC HEALTH AGENCY OF CANADA   (Canada)

^d MCGILL UNIVERSITY   (Canada)

^e Gouvernement du Quebec   (Canada)

^f Dir Gen de la S Publique   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; BIOINFORMATICS; CANADA; CLONAL VARIATION; CONTROLLED STUDY; EPIDEMIC; EPIDEMIOLOGICAL DATA; GENE SEQUENCE; GENOME ANALYSIS; NONHUMAN; PHYLOGENOMICS; PHYLOGENY; PRIORITY JOURNAL; SALMONELLA ENTERICA SEROVAR HEIDELBERG; SINGLE NUCLEOTIDE POLYMORPHISM; STRAIN IDENTIFICATION; CLASSIFICATION; GENETICS; GENOMICS; GENOTYPE; HIGH THROUGHPUT SEQUENCING; HUMAN; MICROBIOLOGY; MOLECULAR TYPING; PROCEDURES; PULSED FIELD GEL ELECTROPHORESIS; QUEBEC; SALMONELLA ENTERICA; SALMONELLA INFECTIONS;

DISEASE OUTBREAKS; ELECTROPHORESIS, GEL, PULSED-FIELD; GENOME, BACTERIAL; GENOMICS; GENOTYPE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MOLECULAR TYPING; POLYMORPHISM, SINGLE NUCLEOTIDE; QUEBEC; SALMONELLA ENTERICA; SALMONELLA INFECTIONS;

EID: 84956671235     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.02200-15     Document Type: Article

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