Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis

Journal of Clinical Microbiology

Volumn 53, Issue 1, 2015, Pages 212-218

  Deng, Xiangyu ^a   Shariat, Nikki ^b   Driebe, Elizabeth M ^c   Roe, Chandler C ^c   Tolar, Beth ^d   Trees, Eija ^d   Keim, Paul ^c,e   Zhang, Wei ^f   Dudley, Edward G ^b   Fields, Patricia I ^d   Engelthaler, David M ^c  

^a UNIVERSITY OF GEORGIA   (United States)

^b PENNSYLVANIA STATE UNIVERSITY   (United States)

^c TRANSLATIONAL GENOMICS RESEARCH INSTITUTE   (United States)

^d NATIONAL CENTER FOR EMERGING AND ZOONOTIC INFECTIOUS DISEASES   (United States)

^e NORTHERN ARIZONA UNIVERSITY   (United States)

^f ILLINOIS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM ISOLATE; CONTROLLED STUDY; EPIDEMIC; GENETIC PROCEDURES; INTERMETHOD COMPARISON; MOLECULAR TYPING; NONHUMAN; PHYLOGENY; POPULATION STRUCTURE; PULSED FIELD GEL ELECTROPHORESIS; QUALITY CONTROL; RETROSPECTIVE STUDY; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR ENTERITIDIS; SINGLE NUCLEOTIDE POLYMORPHISM; UNITED STATES; WHOLE GENOME SEQUENCING; BACTERIAL GENOME; CLASSIFICATION; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEAT; GENETICS; GENOTYPE; HUMAN; MICROBIOLOGY; MULTILOCUS SEQUENCE TYPING; SALMONELLA ENTERICA SEROVAR ENTERITIDIS; SALMONELLA INFECTIONS; SEROTYPE;

SALMONELLA ENTERICA;

MICROSATELLITE DNA;

CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEATS; DISEASE OUTBREAKS; ELECTROPHORESIS, GEL, PULSED-FIELD; GENOME, BACTERIAL; GENOTYPE; HUMANS; MICROSATELLITE REPEATS; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; SALMONELLA ENTERITIDIS; SALMONELLA INFECTIONS; SEROGROUP;

EID: 84919479549     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.02332-14     Document Type: Article

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