The Listeria monocytogenes Core-Genome Sequence Typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data

BMC Microbiology

Volumn 15, Issue 1, 2015, Pages

  Pightling, Arthur W ^a   Petronella, Nicholas ^b   Pagotto, Franco ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^b Health Canada and World Health Organization Collaborating Center for Standardization and Evaluation of Biologicals   (Canada)

Author keywords

cgMLST; Listeria monocytogenes; MLST; Molecular characterization; Multi locus sequence typing; Next generation sequencing; PFGE; Pulsed field gel electrophoresis; Typing; wgMLST

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIUM ISOLATE; BIOINFORMATICS; COMPUTER PROGRAM; CONTROLLED STUDY; CORE GENOME SEQUENCE TYPING METHOD; INTERMETHOD COMPARISON; LISTERIA MONOCYTOGENES; LISTERIOSIS; MOLECULAR TYPING; MULTILOCUS SEQUENCE TYPING; NEXT GENERATION SEQUENCING; NONHUMAN; OPEN READING FRAME; ORTHOLOGY; PHYLOGENY; PULSED FIELD GEL ELECTROPHORESIS; RIBOTYPING; SEQUENCE ANALYSIS; SEQUENCE DATABASE; BIOLOGY; CLASSIFICATION; DNA SEQUENCE; EVALUATION STUDY; GENETICS; HIGH THROUGHPUT SEQUENCING; PROCEDURES;

COMPUTATIONAL BIOLOGY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; LISTERIA MONOCYTOGENES; MOLECULAR TYPING; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 84945178887     PISSN: None     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/s12866-015-0526-1     Document Type: Article

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