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Volumn 53, Issue 9, 2015, Pages 2869-2876

Defining and evaluating a core genome multilocus sequence typing scheme for whole-genome sequence-based typing of listeria monocytogenes

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATE; GENE SEQUENCE; GENE TARGETING; LISTERIA MONOCYTOGENES; MICROBIAL DIVERSITY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SEROTYPE; ANIMAL; CLASSIFICATION; EVALUATION STUDY; FOOD CONTROL; GENETIC VARIATION; GENETICS; GENOTYPE; HUMAN; LISTERIOSIS; MICROBIOLOGY; MOLECULAR EPIDEMIOLOGY; PROCEDURES; VETERINARY;

EID: 84940043454     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.01193-15     Document Type: Article
Times cited : (222)

References (36)
  • 1
    • 84923062857 scopus 로고    scopus 로고
    • Pregnancy related listeriosis: Treatment and control
    • Allerberger F, Huhulescu S. 2015. Pregnancy related listeriosis: treatment and control. Expert Rev Anti Infect Ther 13:395=403. http://dx.doi.org/10.1586/14787210.2015.1003809.
    • (2015) Expert Rev Anti Infect Ther , vol.13 , pp. 395-403
    • Allerberger, F.1    Huhulescu, S.2
  • 2
    • 84922966967 scopus 로고    scopus 로고
    • Listeriosis: The dark side of refrigeration and ensiling
    • Sing A (ed), focus on public health aspects Springer Verlag, Heidelberg, Germany
    • Allerberger F, Bag Z, Huhulescu S, Pietzka A. 2015. Listeriosis: the dark side of refrigeration and ensiling, p 249-286. In Sing A (ed), Zoonoses-infections affecting humans and animals. focus on public health aspects Springer Verlag, Heidelberg, Germany.
    • (2015) Zoonoses-infections Affecting Humans and Animals , pp. 249-286
    • Allerberger, F.1    Bag, Z.2    Huhulescu, S.3    Pietzka, A.4
  • 4
    • 33744958436 scopus 로고    scopus 로고
    • Identification, subtyping and virulence determination of Listeria monocytogenes, an important foodborne pathogen
    • Liu D. 2006. Identification, subtyping and virulence determination of Listeria monocytogenes, an important foodborne pathogen. J Med Microbiol 55:645-659. http://dx.doi.org/10.1099/jmm.0.46495-0.
    • (2006) J Med Microbiol , vol.55 , pp. 645-659
    • Liu, D.1
  • 5
    • 0035843644 scopus 로고    scopus 로고
    • PulseNet standardized protocol for subtyping Listeria monocytogenes by macrorestriction and pulsed-field gel electrophoresis
    • Graves LM, Swaminathan B. 2001. PulseNet standardized protocol for subtyping Listeria monocytogenes by macrorestriction and pulsed-field gel electrophoresis. Int J Food Microbiol 65:55-62. http://dx.doi.org/10.1016/S0168-1605(00)00501-8.
    • (2001) Int J Food Microbiol , vol.65 , pp. 55-62
    • Graves, L.M.1    Swaminathan, B.2
  • 7
    • 84892973554 scopus 로고    scopus 로고
    • The ubiquitous nature of Listeria monocytogenes clones: A large-scale multilocus sequence typing study
    • Haase JK, Didelot X, Lecuit M, Korkeala H, L. monocytogenes MLST Study Group, Achtman M. 2014. The ubiquitous nature of Listeria monocytogenes clones: a large-scale multilocus sequence typing study. Environ Microbiol 16:405-416. http://dx.doi.org/10.1111/1462-2920.12342.
    • (2014) Environ Microbiol , vol.16 , pp. 405-416
    • Haase, J.K.1    Didelot, X.2    Lecuit, M.3    Korkeala, H.4    Achtman, M.5
  • 11
    • 13244267001 scopus 로고    scopus 로고
    • MlstdbNet-distributed multi-locus sequence typing (MLST) databases
    • Jolley KA, Chan M-S, Maiden MCJ. 2004. mlstdbNet-distributed multi-locus sequence typing (MLST) databases. BMC Bioinformatics 5:86. http://dx.doi.org/10.1186/1471-2105-5-86.
    • (2004) BMC Bioinformatics , vol.5 , pp. 86
    • Jolley, K.A.1    Chan, M.-S.2    McJ, M.3
  • 12
    • 0037312201 scopus 로고    scopus 로고
    • Development of a multilocus sequence typing method for the analysis of Listeria monocytogenes clones
    • Salcedo C, Arreaza L, Alcalá B, de la Fuente L, Vázquez JA. 2003. Development of a multilocus sequence typing method for the analysis of Listeria monocytogenes clones. J Clin Microbiol 41:757-762. http://dx.doi/org/10.1128/JCM.41.2.757-762.2003.
    • (2003) J Clin Microbiol , vol.41 , pp. 757-762
    • Salcedo, C.1    Arreaza, L.2    Alcalá, B.3    De La Fuente, L.4    Vázquez, J.A.5
  • 13
    • 2342462892 scopus 로고    scopus 로고
    • Multi-virulence-locus sequence typing of Listeria monocytogenes
    • Zhang W, Jayarao BM, Knabel SJ. 2004. Multi-virulence-locus sequence typing of Listeria monocytogenes. Appl Environ Microbiol 70:913-920. http://dx.doi.org/10.1128/AEM.70.2.913-920.2004.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 913-920
    • Zhang, W.1    Jayarao, B.M.2    Knabel, S.J.3
  • 24
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821-829. http://dx.doi/org/10.1101/gr.074492.107.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 26
    • 62349132559 scopus 로고    scopus 로고
    • Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
    • Corander J, Marttinen P, Sirén J, Tang J. 2008. Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 9:539. http://dx.doi.org/10.1186/1471-2105-9-539.
    • (2008) BMC Bioinformatics , vol.9 , pp. 539
    • Corander, J.1    Marttinen, P.2    Sirén, J.3    Tang, J.4
  • 28
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797. http://dx.doi/org/10.1093/nar/gkh340.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 29
    • 84903300394 scopus 로고    scopus 로고
    • Using multilocus sequence typing to study bacterial variation: Prospects in the genomic era
    • Jolley KA, Maiden MCJ. 2014. Using multilocus sequence typing to study bacterial variation: prospects in the genomic era. Future Microbiol 9:623-630. http://dx.doi.org/10.2217/fmb.14.24.
    • (2014) Future Microbiol , vol.9 , pp. 623-630
    • Jolley, K.A.1    McJ, M.2
  • 30
    • 84903792383 scopus 로고    scopus 로고
    • Whole-genome-based Mycobacterium tuberculosis surveillance: A standardized, portable, and expandable approach
    • Kohl TA, Diel R, Harmsen D, Rothgnger J, Walter KM, Merker M, Weniger T, Niemann S. 2014. Whole-genome-based Mycobacterium tuberculosis surveillance: a standardized, portable, and expandable approach. J Clin Microbiol 52:2479-2486. http://dx.doi.org/10.1128/JCM/00567-14.
    • (2014) J Clin Microbiol , vol.52 , pp. 2479-2486
    • Kohl, T.A.1    Diel, R.2    Harmsen, D.3    Rothgnger, J.4    Walter, K.M.5    Merker, M.6    Weniger, T.7    Niemann, S.8
  • 31
    • 84903782426 scopus 로고    scopus 로고
    • Bacterial whole genome sequencing revisited: Portable, scalable and standardized analysis for typing and detection of virulence and antibiotic resistance genes
    • Leopold SR, Goering RV, Witten A, Harmsen D, Mellmann A. 2014. Bacterial whole genome sequencing revisited: portable, scalable and standardized analysis for typing and detection of virulence and antibiotic resistance genes. J Clin Microbiol 52:2365-2370. http://dx.doi.org/10.1128/JCM.00262-14.
    • (2014) J Clin Microbiol , vol.52 , pp. 2365-2370
    • Leopold, S.R.1    Goering, R.V.2    Witten, A.3    Harmsen, D.4    Mellmann, A.5
  • 32
    • 84890837667 scopus 로고    scopus 로고
    • Comparison of the Legionella pneumophila population structure as determined by sequence-based typing and whole genome sequencing
    • Underwood AP, Jones G, Mentasti M, Fry NK, Harrison TG. 2013. Comparison of the Legionella pneumophila population structure as determined by sequence-based typing and whole genome sequencing. BMC Microbiol 13:302. http://dx.doi.org/10.1186/1471-2180-13-302.
    • (2013) BMC Microbiol , vol.13 , pp. 302
    • Underwood, A.P.1    Jones, G.2    Mentasti, M.3    Fry, N.K.4    Harrison, T.G.5
  • 33
    • 78651063196 scopus 로고    scopus 로고
    • Gene scanning of an internalin B gene fragment using high-resolution melting curve analysis as a tool for rapid typing of Listeria monocytogenes
    • Pietzka AT, Stöger A, Huhulescu S, Allerberger F, Ruppitsch W. 2011. Gene scanning of an internalin B gene fragment using high-resolution melting curve analysis as a tool for rapid typing of Listeria monocytogenes. J Mol Diagn 13:57-63. http://dx.doi.org/10.1016/j.jmoldx.2010.11.002.
    • (2011) J Mol Diagn , vol.13 , pp. 57-63
    • Pietzka, A.T.1    Stöger, A.2    Huhulescu, S.3    Allerberger, F.4    Ruppitsch, W.5
  • 34
    • 84896366241 scopus 로고    scopus 로고
    • Genome sequencing of Listeria monocytogenes "quargel" listeriosis outbreak strains reveals two different strains with distinct in vitro virulence potential
    • Rychli K, Mller A, Zaiser A, Schoder D, Allerberger F, Wagner M, Schmitz-Esser S. 2014. Genome sequencing of Listeria monocytogenes "Quargel" listeriosis outbreak strains reveals two different strains with distinct in vitro virulence potential. PLoS One 9:e89964. http://dx.doi.org/10.1371/journal.pone.0089964.
    • (2014) PLoS One , vol.9 , pp. e89964
    • Rychli, K.1    Mller, A.2    Zaiser, A.3    Schoder, D.4    Allerberger, F.5    Wagner, M.6    Schmitz-Esser, S.7
  • 36
    • 33645371272 scopus 로고    scopus 로고
    • Automated DNA sequence-based early warning system for the detection of methicillin-resistant Staphylococcus aureus outbreaks
    • Mellmann A, Friedrich AW, Rosenkötter N, Rothgnger J, Karch H, Reintjes R, Harmsen D. 2006. Automated DNA sequence-based early warning system for the detection of methicillin-resistant Staphylococcus aureus outbreaks. PLoS Med 3:e33. http://dx.doi.org/10.1371/journal/pmed.0030033.
    • (2006) PLoS Med , vol.3 , pp. e33
    • Mellmann, A.1    Friedrich, A.W.2    Rosenkötter, N.3    Rothgnger, J.4    Karch, H.5    Reintjes, R.6    Harmsen, D.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.