Strain-level microbial epidemiology and population genomics from shotgun metagenomics

Nature Methods

Volumn 13, Issue 5, 2016, Pages 435-438

  Scholz, Matthias ^a   Ward, Doyle V ^b   Pasolli, Edoardo ^a   Tolio, Thomas ^a   Zolfo, Moreno ^a   Asnicar, Francesco ^a   Truong, Duy Tin ^a   Tett, Adrian ^a   Morrow, Ardythe L ^c   Segata, Nicola ^a  

^a UNIVERSITY OF TRENTO   (Italy)

^b UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

^c Dept of Obstetrics and Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTEROIDES FRAGILIS; BACTEROIDES OVATUS; ESCHERICHIA COLI; EUBACTERIUM; HUMAN; METAGENOME; METAGENOMICS; MICROBIAL COMMUNITY; MULTIGENE FAMILY; NEISSERIA MENINGITIDIS; NONHUMAN; PANGENOME BASED PHYLOGENOMIC ANALYSIS; PELAGIBACTER; PHYLOGENOMICS; PRIORITY JOURNAL; PROCHLOROCOCCUS; ROSEOBACTER; STAPHYLOCOCCUS AUREUS; STAPHYLOCOCCUS EPIDERMIDIS; STRAIN IDENTIFICATION; BACTERIAL GENOME; CLASSIFICATION; GENE EXPRESSION PROFILING; GENETICS; GERMANY; INTESTINE MUCOSA; ISOLATION AND PURIFICATION; MICROBIAL CONSORTIUM; MICROBIOLOGY; PATHOGENICITY; PHYLOGENY; PROCEDURES; SKIN; SOFTWARE; SPECIES DIFFERENCE;

ESCHERICHIA COLI; GENE EXPRESSION PROFILING; GENOME, BACTERIAL; GERMANY; HUMANS; INTESTINAL MUCOSA; METAGENOME; METAGENOMICS; MICROBIAL CONSORTIA; PHYLOGENY; SKIN; SOFTWARE; SPECIES SPECIFICITY;

EID: 84961392884     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.3802     Document Type: Article

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