-
1
-
-
77956281923
-
Neonatal outcomes of extremely preterm infants from the NICHD Neonatal Research Network
-
10.1542/peds.2009-2959, 2982806, 20732945
-
Stoll BJ, Hansen NI, Bell EF, Shankaran S, Laptook AR. Neonatal outcomes of extremely preterm infants from the NICHD Neonatal Research Network. Pediatrics 2010, 126:443-456. 10.1542/peds.2009-2959, 2982806, 20732945.
-
(2010)
Pediatrics
, vol.126
, pp. 443-456
-
-
Stoll, B.J.1
Hansen, N.I.2
Bell, E.F.3
Shankaran, S.4
Laptook, A.R.5
-
2
-
-
84861915307
-
Approach to infants born at 22 to 24 weeks' gestation: relationship to outcomes of more-mature infants
-
10.1542/peds.2011-2216, 22641761
-
Smith PB, Ambalavanan N, Li L, Cotten CM, Laughon M. Approach to infants born at 22 to 24 weeks' gestation: relationship to outcomes of more-mature infants. Pediatrics 2012, 129:e1508-e1516. 10.1542/peds.2011-2216, 22641761.
-
(2012)
Pediatrics
, vol.129
-
-
Smith, P.B.1
Ambalavanan, N.2
Li, L.3
Cotten, C.M.4
Laughon, M.5
-
3
-
-
84863021827
-
Incidence and timing of presentation of necrotizing enterocolitis in preterm infants
-
10.1542/peds.2011-2022, 22271701
-
Yee WH, Soraisham AS, Shah VS, Aziz K, Yoon W. Incidence and timing of presentation of necrotizing enterocolitis in preterm infants. Pediatrics 2012, 129:e298-e304. 10.1542/peds.2011-2022, 22271701.
-
(2012)
Pediatrics
, vol.129
-
-
Yee, W.H.1
Soraisham, A.S.2
Shah, V.S.3
Aziz, K.4
Yoon, W.5
-
4
-
-
79952825184
-
The mechanism of excessive intestinal inflammation in necrotizing enterocolitis: an immature innate immune response
-
10.1371/journal.pone.0017776, 3061868, 21445298
-
Nanthakumar N, Meng D, Goldstein AM, Zhu W, Lu L. The mechanism of excessive intestinal inflammation in necrotizing enterocolitis: an immature innate immune response. PLoS One 2011, 6:e17776. 10.1371/journal.pone.0017776, 3061868, 21445298.
-
(2011)
PLoS One
, vol.6
-
-
Nanthakumar, N.1
Meng, D.2
Goldstein, A.M.3
Zhu, W.4
Lu, L.5
-
5
-
-
58149354696
-
Role of human milk in extremely low birth weight infants' risk of necrotizing enterocolitis or death
-
10.1038/jp.2008.117, 2801431, 18716628
-
Meinzen-Derr J, Poindexter B, Wrage L, Morrow AL, Stoll B. Role of human milk in extremely low birth weight infants' risk of necrotizing enterocolitis or death. J Perinatol 2009, 29:57-62. 10.1038/jp.2008.117, 2801431, 18716628.
-
(2009)
J Perinatol
, vol.29
, pp. 57-62
-
-
Meinzen-Derr, J.1
Poindexter, B.2
Wrage, L.3
Morrow, A.L.4
Stoll, B.5
-
7
-
-
59449084598
-
Prolonged duration of initial empirical antibiotic treatment is associated with increased rates of necrotizing enterocolitis and death for extremely low birth weight infants
-
10.1542/peds.2007-3423, 2760222, 19117861
-
Cotten CM, Taylor S, Stoll B, Goldberg RN, Hansen NI. Prolonged duration of initial empirical antibiotic treatment is associated with increased rates of necrotizing enterocolitis and death for extremely low birth weight infants. Pediatrics 2009, 123:58-66. 10.1542/peds.2007-3423, 2760222, 19117861.
-
(2009)
Pediatrics
, vol.123
, pp. 58-66
-
-
Cotten, C.M.1
Taylor, S.2
Stoll, B.3
Goldberg, R.N.4
Hansen, N.I.5
-
8
-
-
80054739536
-
Prolonged initial empirical antibiotic treatment is associated with adverse outcomes in premature infants
-
10.1016/j.jpeds.2011.05.033, 3193552, 21784435
-
Kuppala VS, Meinzen-Derr J, Morrow AL, Schibler KR. Prolonged initial empirical antibiotic treatment is associated with adverse outcomes in premature infants. J Pediatr 2011, 159:720-725. 10.1016/j.jpeds.2011.05.033, 3193552, 21784435.
-
(2011)
J Pediatr
, vol.159
, pp. 720-725
-
-
Kuppala, V.S.1
Meinzen-Derr, J.2
Morrow, A.L.3
Schibler, K.R.4
-
9
-
-
68649103962
-
16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis
-
10.1038/ismej.2009.37, 2713796, 19369970
-
Wang Y, Hoenig JD, Malin KJ, Qamar S, Petrof EO. 16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis. ISME J 2009, 3:944-954. 10.1038/ismej.2009.37, 2713796, 19369970.
-
(2009)
ISME J
, vol.3
, pp. 944-954
-
-
Wang, Y.1
Hoenig, J.D.2
Malin, K.J.3
Qamar, S.4
Petrof, E.O.5
-
10
-
-
79958154014
-
Fecal microbiota in premature infants prior to necrotizing enterocolitis
-
10.1371/journal.pone.0020647, 3108958, 21674011
-
Mai V, Young CM, Ukhanova M, Wang X, Sun Y. Fecal microbiota in premature infants prior to necrotizing enterocolitis. PLoS One 2011, 6:e20647. 10.1371/journal.pone.0020647, 3108958, 21674011.
-
(2011)
PLoS One
, vol.6
-
-
Mai, V.1
Young, C.M.2
Ukhanova, M.3
Wang, X.4
Sun, Y.5
-
11
-
-
79952926446
-
Gram negative bacteria are associated with the early stages of necrotizing enterocolitis
-
10.1371/journal.pone.0018084, 3062571, 21445365
-
Carlisle EM, Poroyko V, Caplan MS, Alverdy JA, Liu D. Gram negative bacteria are associated with the early stages of necrotizing enterocolitis. PLoS One 2011, 6:e18084. 10.1371/journal.pone.0018084, 3062571, 21445365.
-
(2011)
PLoS One
, vol.6
-
-
Carlisle, E.M.1
Poroyko, V.2
Caplan, M.S.3
Alverdy, J.A.4
Liu, D.5
-
12
-
-
82955201588
-
Beyond bacteria: a study of the enteric microbial consortium in extremely low birth weight infants
-
10.1371/journal.pone.0027858, 3234235, 22174751
-
LaTuga MS, Ellis JC, Cotton CM, Goldberg RN, Wynn JL. Beyond bacteria: a study of the enteric microbial consortium in extremely low birth weight infants. PLoS One 2011, 6:e27858. 10.1371/journal.pone.0027858, 3234235, 22174751.
-
(2011)
PLoS One
, vol.6
-
-
LaTuga, M.S.1
Ellis, J.C.2
Cotton, C.M.3
Goldberg, R.N.4
Wynn, J.L.5
-
13
-
-
79951604923
-
New insights into the pathogenesis and treatment of necrotizing enterocolitis: toll-like receptors and beyond
-
10.1203/PDR.0b013e3182093280, 3125129, 21135755
-
Afrazi A, Sodhi CP, Richardson W, Neal M, Good M. New insights into the pathogenesis and treatment of necrotizing enterocolitis: toll-like receptors and beyond. Pediatr Res 2011, 69:183-188. 10.1203/PDR.0b013e3182093280, 3125129, 21135755.
-
(2011)
Pediatr Res
, vol.69
, pp. 183-188
-
-
Afrazi, A.1
Sodhi, C.P.2
Richardson, W.3
Neal, M.4
Good, M.5
-
14
-
-
84856236320
-
Critical systematic review of the level of evidence for routine use of probiotics for reduction of mortality and prevention of necrotizing enterocolitis and sepsis in preterm infants
-
10.1016/j.clnu.2011.09.004, 21996513
-
Mihatsch WA, Braegger CP, Decsi T, Kolacek S, Lanzinger H. Critical systematic review of the level of evidence for routine use of probiotics for reduction of mortality and prevention of necrotizing enterocolitis and sepsis in preterm infants. Clin Nutr 2012, 31:6-15. 10.1016/j.clnu.2011.09.004, 21996513.
-
(2012)
Clin Nutr
, vol.31
, pp. 6-15
-
-
Mihatsch, W.A.1
Braegger, C.P.2
Decsi, T.3
Kolacek, S.4
Lanzinger, H.5
-
15
-
-
77950560388
-
Redefining the role of intestinal microbes in the pathogenesis of necrotizing enterocolitis
-
10.1542/peds.2009-3149, 20308210
-
Morowitz MJ, Poroyko V, Caplan M, Alverdy J, Liu DC. Redefining the role of intestinal microbes in the pathogenesis of necrotizing enterocolitis. Pediatrics 2010, 125:777-785. 10.1542/peds.2009-3149, 20308210.
-
(2010)
Pediatrics
, vol.125
, pp. 777-785
-
-
Morowitz, M.J.1
Poroyko, V.2
Caplan, M.3
Alverdy, J.4
Liu, D.C.5
-
16
-
-
77952189062
-
Intestinal candidiasis: an uncommon cause of necrotizing enterocolitis (NEC) in neonates
-
10.3109/15513811003777342, 20450270
-
Parra-Herran CE, Pelaez L, Sola JE, Urbiztondo AK, Rodriguez MM. Intestinal candidiasis: an uncommon cause of necrotizing enterocolitis (NEC) in neonates. Fetal Pediatr Pathol 2010, 29:172-180. 10.3109/15513811003777342, 20450270.
-
(2010)
Fetal Pediatr Pathol
, vol.29
, pp. 172-180
-
-
Parra-Herran, C.E.1
Pelaez, L.2
Sola, J.E.3
Urbiztondo, A.K.4
Rodriguez, M.M.5
-
17
-
-
77954317419
-
Andrew Ramsden C, et al.: An outbreak of necrotizing enterocolitis associated with norovirus genotype GII.3
-
10.1097/INF.0b013e3181d824e1, 20589982
-
Stuart RL, Tan K, Mahar JE, Kirkwood CD. Andrew Ramsden C, et al.: An outbreak of necrotizing enterocolitis associated with norovirus genotype GII.3. Pediatr Infect Dis J 2010, 29:644-647. 10.1097/INF.0b013e3181d824e1, 20589982.
-
(2010)
Pediatr Infect Dis J
, vol.29
, pp. 644-647
-
-
Stuart, R.L.1
Tan, K.2
Mahar, J.E.3
Kirkwood, C.D.4
-
18
-
-
84856305976
-
Clinical manifestations of a cluster of rotavirus infection in young infants hospitalized in neonatal care units
-
10.1016/j.jmii.2011.09.023, 22154991
-
Tai IC, Huang YC, Lien RI, Huang CG, Tsao KC. Clinical manifestations of a cluster of rotavirus infection in young infants hospitalized in neonatal care units. J Microbiol Immunol Infect 2012, 45:15-21. 10.1016/j.jmii.2011.09.023, 22154991.
-
(2012)
J Microbiol Immunol Infect
, vol.45
, pp. 15-21
-
-
Tai, I.C.1
Huang, Y.C.2
Lien, R.I.3
Huang, C.G.4
Tsao, K.C.5
-
19
-
-
84865369416
-
Temporal and spatial interplay of microbiota and intestinal mucosa drive establishment of immune homeostasis in conventionalized mice
-
10.1038/mi.2012.32, 22617837
-
El Aidy S, van Baarlen P, Derrien M, Lindenbergh-Kortleve DJ, Hooiveld G. Temporal and spatial interplay of microbiota and intestinal mucosa drive establishment of immune homeostasis in conventionalized mice. Mucosal Immunol 2012, 5:567-579. 10.1038/mi.2012.32, 22617837.
-
(2012)
Mucosal Immunol
, vol.5
, pp. 567-579
-
-
El Aidy, S.1
van Baarlen, P.2
Derrien, M.3
Lindenbergh-Kortleve, D.J.4
Hooiveld, G.5
-
20
-
-
84861980130
-
Interactions between the microbiota and the immune system
-
10.1126/science.1223490, 22674334
-
Hooper LV, Littman DR, Macpherson AJ. Interactions between the microbiota and the immune system. Science 2012, 336:1268-1273. 10.1126/science.1223490, 22674334.
-
(2012)
Science
, vol.336
, pp. 1268-1273
-
-
Hooper, L.V.1
Littman, D.R.2
Macpherson, A.J.3
-
21
-
-
84866066519
-
Early life: gut microbiota and immune development in infancy
-
10.3920/BM2010.0027, 21831776
-
Martin R, Nauta AJ, Ben Amor K, Knippels LM, Knol J. Early life: gut microbiota and immune development in infancy. Benef Microbes 2010, 1:367-382. 10.3920/BM2010.0027, 21831776.
-
(2010)
Benef Microbes
, vol.1
, pp. 367-382
-
-
Martin, R.1
Nauta, A.J.2
Ben Amor, K.3
Knippels, L.M.4
Knol, J.5
-
22
-
-
79952855316
-
Depletion of murine intestinal microbiota: effects on gut mucosa and epithelial gene expression
-
10.1371/journal.pone.0017996, 3061881, 21445311
-
Reikvam DH, Erofeev A, Sandvik A, Grcic V, Jahnsen FL. Depletion of murine intestinal microbiota: effects on gut mucosa and epithelial gene expression. PLoS One 2011, 6:e17996. 10.1371/journal.pone.0017996, 3061881, 21445311.
-
(2011)
PLoS One
, vol.6
-
-
Reikvam, D.H.1
Erofeev, A.2
Sandvik, A.3
Grcic, V.4
Jahnsen, F.L.5
-
23
-
-
79955789416
-
The role of microbes in developmental immunologic programming
-
10.1203/PDR.0b013e318217638a, 21364495
-
Kaplan JL, Shi HN, Walker WA. The role of microbes in developmental immunologic programming. Pediatr Res 2011, 69:465-472. 10.1203/PDR.0b013e318217638a, 21364495.
-
(2011)
Pediatr Res
, vol.69
, pp. 465-472
-
-
Kaplan, J.L.1
Shi, H.N.2
Walker, W.A.3
-
24
-
-
22144490199
-
An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system
-
10.1016/j.cell.2005.05.007, 16009137
-
Mazmanian SK, Liu CH, Tzianabos AO, Kasper DL. An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 2005, 122:107-118. 10.1016/j.cell.2005.05.007, 16009137.
-
(2005)
Cell
, vol.122
, pp. 107-118
-
-
Mazmanian, S.K.1
Liu, C.H.2
Tzianabos, A.O.3
Kasper, D.L.4
-
25
-
-
79955632657
-
GC-MS based metabolomics for rapid simultaneous detection of Escherichia coli O157:H7, Salmonella Typhimurium, Salmonella Muenchen, and Salmonella Hartford in ground beef and chicken
-
10.1111/j.1750-3841.2011.02132.x, 22417363
-
Cevallos-Cevallos JM, Danyluk MD, Reyes-De-Corcuera JI. GC-MS based metabolomics for rapid simultaneous detection of Escherichia coli O157:H7, Salmonella Typhimurium, Salmonella Muenchen, and Salmonella Hartford in ground beef and chicken. J Food Sci 2011, 76:M238-M246. 10.1111/j.1750-3841.2011.02132.x, 22417363.
-
(2011)
J Food Sci
, vol.76
-
-
Cevallos-Cevallos, J.M.1
Danyluk, M.D.2
Reyes-De-Corcuera, J.I.3
-
26
-
-
78449294938
-
Utilization of amino acids by bacteria from the pig small intestine
-
10.1007/s00726-010-0556-9, 20300787
-
Dai ZL, Zhang J, Wu G, Zhu WY. Utilization of amino acids by bacteria from the pig small intestine. Amino Acids 2010, 39:1201-1215. 10.1007/s00726-010-0556-9, 20300787.
-
(2010)
Amino Acids
, vol.39
, pp. 1201-1215
-
-
Dai, Z.L.1
Zhang, J.2
Wu, G.3
Zhu, W.Y.4
-
27
-
-
79957601426
-
Microbial community and metabolomic comparison of irritable bowel syndrome faeces
-
10.1099/jmm.0.028126-0, 3167923, 21330412
-
Ponnusamy K, Choi JN, Kim J, Lee SY, Lee CH. Microbial community and metabolomic comparison of irritable bowel syndrome faeces. J Med Microbiol 2011, 60:817-827. 10.1099/jmm.0.028126-0, 3167923, 21330412.
-
(2011)
J Med Microbiol
, vol.60
, pp. 817-827
-
-
Ponnusamy, K.1
Choi, J.N.2
Kim, J.3
Lee, S.Y.4
Lee, C.H.5
-
28
-
-
79961227411
-
Variation in antibiotic-induced microbial recolonization impacts on the host metabolic phenotypes of rats
-
10.1021/pr200243t, 21591676
-
Swann JR, Tuohy KM, Lindfors P, Brown DT, Gibson GR. Variation in antibiotic-induced microbial recolonization impacts on the host metabolic phenotypes of rats. J Proteome Res 2011, 10:3590-3603. 10.1021/pr200243t, 21591676.
-
(2011)
J Proteome Res
, vol.10
, pp. 3590-3603
-
-
Swann, J.R.1
Tuohy, K.M.2
Lindfors, P.3
Brown, D.T.4
Gibson, G.R.5
-
29
-
-
67650569467
-
Studying the human gut microbiota in the trans-omics era - focus on metagenomics and metabonomics
-
10.2174/138161209788168182, 19442166
-
Tuohy KM, Gougoulias C, Shen Q, Walton G, Fava F. Studying the human gut microbiota in the trans-omics era - focus on metagenomics and metabonomics. Curr Pharm Des 2009, 15:1415-1427. 10.2174/138161209788168182, 19442166.
-
(2009)
Curr Pharm Des
, vol.15
, pp. 1415-1427
-
-
Tuohy, K.M.1
Gougoulias, C.2
Shen, Q.3
Walton, G.4
Fava, F.5
-
30
-
-
0022648941
-
Necrotizing enterocolitis: treatment based on staging criteria
-
Walsh MC, Kliegman RM. Necrotizing enterocolitis: treatment based on staging criteria. Pediatr Clin North Am 1986, 33:179-201.
-
(1986)
Pediatr Clin North Am
, vol.33
, pp. 179-201
-
-
Walsh, M.C.1
Kliegman, R.M.2
-
31
-
-
82755167807
-
Identification of urinary metabolites that distinguish membranous lupus nephritis from proliferative lupus nephritis and focal segmental glomerulosclerosis
-
10.1186/ar3530, 3334650, 22152586
-
Romick-Rosendale LE, Brunner HI, Bennett MR, Mina R, Nelson S. Identification of urinary metabolites that distinguish membranous lupus nephritis from proliferative lupus nephritis and focal segmental glomerulosclerosis. Arthritis Res Ther 2011, 13:R199. 10.1186/ar3530, 3334650, 22152586.
-
(2011)
Arthritis Res Ther
, vol.13
-
-
Romick-Rosendale, L.E.1
Brunner, H.I.2
Bennett, M.R.3
Mina, R.4
Nelson, S.5
-
32
-
-
84862192626
-
Evaluation of 16S rDNA-based community profiling for human microbiome research
-
10.1371/journal.pone.0039315, 3374619, 22720093
-
Dowd SE, Callaway TR, Wolcott RD, Sun Y, McKeehan T, Hagevoort RG, Edrington TS. Evaluation of 16S rDNA-based community profiling for human microbiome research. PLoS One 2012, 7:e39315. 10.1371/journal.pone.0039315, 3374619, 22720093.
-
(2012)
PLoS One
, vol.7
-
-
Dowd, S.E.1
Callaway, T.R.2
Wolcott, R.D.3
Sun, Y.4
McKeehan, T.5
Hagevoort, R.G.6
Edrington, T.S.7
-
33
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
10.1128/AEM.01541-09, 2786419, 19801464
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009, 75:7537-7541. 10.1128/AEM.01541-09, 2786419, 19801464.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
34
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
10.1093/bioinformatics/btr381, 3150044, 21700674
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 2011, 27:2194-2200. 10.1093/bioinformatics/btr381, 3150044, 21700674.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
35
-
-
84863022950
-
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
-
10.1101/gr.126573.111, 3266036, 22009990
-
Kostic AD, Gevers D, Pedamallu CS, Michaud M, Duke F. Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. Genome Res 2012, 22:292-298. 10.1101/gr.126573.111, 3266036, 22009990.
-
(2012)
Genome Res
, vol.22
, pp. 292-298
-
-
Kostic, A.D.1
Gevers, D.2
Pedamallu, C.S.3
Michaud, M.4
Duke, F.5
-
36
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
1464427, 16056220
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380. 1464427, 16056220.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
-
37
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
10.1093/nar/gkn879, 2686447, 19004872
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 2009, 37:D141-D145. 10.1093/nar/gkn879, 2686447, 19004872.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
-
38
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
10.1038/ismej.2011.139, 3280142, 22134646
-
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J 2012, 6:610-618. 10.1038/ismej.2011.139, 3280142, 22134646.
-
(2012)
ISME J
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
-
39
-
-
84938484770
-
-
A Language and Environment for Statistical Computing
-
Core R. Team: R 2012, A Language and Environment for Statistical Computing, [http://www.R-project.org].
-
(2012)
Team: R
-
-
Core, R.1
-
40
-
-
79959383523
-
Metagenomic biomarker discovery and explanation
-
10.1186/gb-2011-12-6-r60, 3218848, 21702898
-
Segata N, Izard J, Waldron L, Gevers D, Miropolsky L. Metagenomic biomarker discovery and explanation. Genome Biol 2011, 12:R60. 10.1186/gb-2011-12-6-r60, 3218848, 21702898.
-
(2011)
Genome Biol
, vol.12
-
-
Segata, N.1
Izard, J.2
Waldron, L.3
Gevers, D.4
Miropolsky, L.5
-
41
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
10.1038/nmeth.f.303, 3156573, 20383131
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010, 7:335-336. 10.1038/nmeth.f.303, 3156573, 20383131.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
-
42
-
-
78751575501
-
UniFrac: an effective distance metric for microbial community comparison
-
10.1038/ismej.2010.133, 3105689, 20827291
-
Lozupone C, Lladser ME, Knights D, Stombaugh J, Knight R. UniFrac: an effective distance metric for microbial community comparison. ISME J 2011, 5:169-172. 10.1038/ismej.2010.133, 3105689, 20827291.
-
(2011)
ISME J
, vol.5
, pp. 169-172
-
-
Lozupone, C.1
Lladser, M.E.2
Knights, D.3
Stombaugh, J.4
Knight, R.5
-
44
-
-
0001463548
-
Nonparametric estimation of the number of classes in a population
-
Chao A. Nonparametric estimation of the number of classes in a population. Scand J Stat 1984, 11:265-270.
-
(1984)
Scand J Stat
, vol.11
, pp. 265-270
-
-
Chao, A.1
-
45
-
-
33344464667
-
Measurement of diversity
-
Simpson EH. Measurement of diversity. Nature 1949, 163:688.
-
(1949)
Nature
, vol.163
, pp. 688
-
-
Simpson, E.H.1
-
46
-
-
68649113028
-
Vegan: Community Ecology Package
-
Oksanen J, Blanchet FG, Kindt R, Legendre P, OHara RB
-
Oksanen J, Blanchet FG, Kindt R, Legendre P, OHara RB. vegan: Community Ecology Package. R package version 2011, 1(Oksanen J, Blanchet FG, Kindt R, Legendre P, OHara RB):17-12. [http://cran.r-project.org/package=vegan].
-
(2011)
R package version
, vol.1
, pp. 17-112
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
O'Hara, R.B.5
-
48
-
-
84944178665
-
Hierarchical grouping to optimize an objective function
-
Ward JH. Hierarchical grouping to optimize an objective function. J Am Stat Assoc 1963, 58:236-244.
-
(1963)
J Am Stat Assoc
, vol.58
, pp. 236-244
-
-
Ward, J.H.1
-
49
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Stat Soc Ser B (Methodological) 1995, 57:289-300.
-
(1995)
J Roy Stat Soc Ser B (Methodological)
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
50
-
-
0001038967
-
The generalization of Student's ratio
-
Hotelling H. The generalization of Student's ratio. Ann Math Stat 1931, 2:360-378.
-
(1931)
Ann Math Stat
, vol.2
, pp. 360-378
-
-
Hotelling, H.1
-
51
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
3063592, 20668239
-
Koenig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J. Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci USA 2011, 108(Suppl 1):4578-4585. 3063592, 20668239.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.SUPPL 1
, pp. 4578-4585
-
-
Koenig, J.E.1
Spor, A.2
Scalfone, N.3
Fricker, A.D.4
Stombaugh, J.5
-
52
-
-
79551622954
-
Strain-resolved community genomic analysis of gut microbial colonization in a premature infant
-
10.1073/pnas.1010992108, 3024690, 21191099
-
Morowitz MJ, Denef VJ, Costello EK, Thomas BC, Poroyko V. Strain-resolved community genomic analysis of gut microbial colonization in a premature infant. Proc Natl Acad Sci USA 2011, 108:1128-1133. 10.1073/pnas.1010992108, 3024690, 21191099.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 1128-1133
-
-
Morowitz, M.J.1
Denef, V.J.2
Costello, E.K.3
Thomas, B.C.4
Poroyko, V.5
-
53
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
3376388, 22699611
-
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG. Human gut microbiome viewed across age and geography. Nature 2012, 486:222-227. 3376388, 22699611.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
-
54
-
-
78650340356
-
Promising immunomodulatory effects of selected strains of dairy propionibacteria as evidenced in vitro and in vivo
-
10.1128/AEM.01976-10, 3008228, 20971874
-
Foligne B, Deutsch SM, Breton J, Cousin FJ, Dewulf J. Promising immunomodulatory effects of selected strains of dairy propionibacteria as evidenced in vitro and in vivo. Appl Environ Microbiol 2010, 76:8259-8264. 10.1128/AEM.01976-10, 3008228, 20971874.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 8259-8264
-
-
Foligne, B.1
Deutsch, S.M.2
Breton, J.3
Cousin, F.J.4
Dewulf, J.5
-
55
-
-
84864451403
-
An expanded multilocus sequence typing scheme for Propionibacterium acnes: investigation of 'pathogenic', 'commensal' and antibiotic resistant strains
-
10.1371/journal.pone.0041480, 3408437, 22859988
-
McDowell A, Barnard E, Nagy I, Gao A, Tomida S. An expanded multilocus sequence typing scheme for Propionibacterium acnes: investigation of 'pathogenic', 'commensal' and antibiotic resistant strains. PLoS One 2012, 7:e41480. 10.1371/journal.pone.0041480, 3408437, 22859988.
-
(2012)
PLoS One
, vol.7
-
-
McDowell, A.1
Barnard, E.2
Nagy, I.3
Gao, A.4
Tomida, S.5
-
56
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
10.1093/nar/gkr988, 3245020, 22080510
-
Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res 2012, 40:D109-D114. 10.1093/nar/gkr988, 3245020, 22080510.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
57
-
-
84865175815
-
Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation
-
10.1093/cid/cis580, 22718773
-
Taur Y, Xavier JB, Lipuma L, Ubeda C, Goldberg J. Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation. Clin Infect Dis 2012, 55:905-914. 10.1093/cid/cis580, 22718773.
-
(2012)
Clin Infect Dis
, vol.55
, pp. 905-914
-
-
Taur, Y.1
Xavier, J.B.2
Lipuma, L.3
Ubeda, C.4
Goldberg, J.5
-
58
-
-
84857048152
-
The mammalian intestinal epithelium as integral player in the establishment and maintenance of host-microbial homeostasis
-
10.1016/j.smim.2011.11.002, 22138188
-
Duerr CU, Hornef MW. The mammalian intestinal epithelium as integral player in the establishment and maintenance of host-microbial homeostasis. Semin Immunol 2012, 24:25-35. 10.1016/j.smim.2011.11.002, 22138188.
-
(2012)
Semin Immunol
, vol.24
, pp. 25-35
-
-
Duerr, C.U.1
Hornef, M.W.2
-
59
-
-
79957996894
-
Biochemical characterization of evasion from peptidoglycan recognition by Staphylococcus aureus D-alanylated wall teichoic acid in insect innate immunity
-
10.1016/j.dci.2011.03.001, 21453720
-
Kurokawa K, Gong JH, Ryu KH, Zheng L, Chae JH. Biochemical characterization of evasion from peptidoglycan recognition by Staphylococcus aureus D-alanylated wall teichoic acid in insect innate immunity. Dev Comp Immunol 2011, 35:835-839. 10.1016/j.dci.2011.03.001, 21453720.
-
(2011)
Dev Comp Immunol
, vol.35
, pp. 835-839
-
-
Kurokawa, K.1
Gong, J.H.2
Ryu, K.H.3
Zheng, L.4
Chae, J.H.5
-
60
-
-
80052446729
-
Crystal structures of bacterial peptidoglycan amidase AmpD and an unprecedented activation mechanism
-
10.1074/jbc.M111.264366, 3173140, 21775432
-
Carrasco-Lopez C, Rojas-Altuve A, Zhang W, Hesek D, Lee M. Crystal structures of bacterial peptidoglycan amidase AmpD and an unprecedented activation mechanism. J Biol Chem 2011, 286:31714-31722. 10.1074/jbc.M111.264366, 3173140, 21775432.
-
(2011)
J Biol Chem
, vol.286
, pp. 31714-31722
-
-
Carrasco-Lopez, C.1
Rojas-Altuve, A.2
Zhang, W.3
Hesek, D.4
Lee, M.5
-
61
-
-
33751287132
-
High efficiency cross-reactive monoclonal antibody production by oral immunization with recombinant Norwalk virus-like particles
-
Tanaka T, Kitamoto N, Jiang X, Estes MK. High efficiency cross-reactive monoclonal antibody production by oral immunization with recombinant Norwalk virus-like particles. Microbiol Immunol 2006, 50:883-888.
-
(2006)
Microbiol Immunol
, vol.50
, pp. 883-888
-
-
Tanaka, T.1
Kitamoto, N.2
Jiang, X.3
Estes, M.K.4
-
62
-
-
84867959354
-
Regulatory role of suppressive motifs from commensal DNA
-
10.1038/mi.2012.36, 22617839
-
Bouladoux N, Hall JA, Grainger JR, Dos Santos LM, Kann MG. Regulatory role of suppressive motifs from commensal DNA. Mucosal Immunol 2012, 5:623-634. 10.1038/mi.2012.36, 22617839.
-
(2012)
Mucosal Immunol
, vol.5
, pp. 623-634
-
-
Bouladoux, N.1
Hall, J.A.2
Grainger, J.R.3
Dos Santos, L.M.4
Kann, M.G.5
-
63
-
-
84859014125
-
Improved detection of bifidobacteria with optimised 16S rRNA-gene based pyrosequencing
-
10.1371/journal.pone.0032543, 3314643, 22470420
-
Sim K, Cox MJ, Wopereis H, Martin R, Knol J. Improved detection of bifidobacteria with optimised 16S rRNA-gene based pyrosequencing. PLoS One 2012, 7:e32543. 10.1371/journal.pone.0032543, 3314643, 22470420.
-
(2012)
PLoS One
, vol.7
-
-
Sim, K.1
Cox, M.J.2
Wopereis, H.3
Martin, R.4
Knol, J.5
-
64
-
-
84871367444
-
Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents
-
Blaser MJ, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G. Distinct cutaneous bacterial assemblages in a sampling of South American Amerindians and US residents. ISME J 2012, 7:85-95.
-
(2012)
ISME J
, vol.7
, pp. 85-95
-
-
Blaser, M.J.1
Dominguez-Bello, M.G.2
Contreras, M.3
Magris, M.4
Hidalgo, G.5
-
65
-
-
56949093047
-
Assessment of the bacterial diversity of human colostrum and screening of staphylococcal and enterococcal populations for potential virulence factors
-
10.1016/j.resmic.2008.09.001, 18845249
-
Jimenez E, Delgado S, Fernandez L, Garcia N, Albujar M. Assessment of the bacterial diversity of human colostrum and screening of staphylococcal and enterococcal populations for potential virulence factors. Res Microbiol 2008, 159:595-601. 10.1016/j.resmic.2008.09.001, 18845249.
-
(2008)
Res Microbiol
, vol.159
, pp. 595-601
-
-
Jimenez, E.1
Delgado, S.2
Fernandez, L.3
Garcia, N.4
Albujar, M.5
-
66
-
-
84863272764
-
Immature oxidative stress management as a unifying principle in the pathogenesis of necrotizing enterocolitis: insights from an agent-based model
-
Kim M, Christley S, Alverdy JC, Liu D, An G. Immature oxidative stress management as a unifying principle in the pathogenesis of necrotizing enterocolitis: insights from an agent-based model. Surg Infect 2012, 13:18-32.
-
(2012)
Surg Infect
, vol.13
, pp. 18-32
-
-
Kim, M.1
Christley, S.2
Alverdy, J.C.3
Liu, D.4
An, G.5
-
67
-
-
84938484035
-
-
Additional sample data
-
Additional sample data [http://www.broadinstitute.org/annotation/genome/microbiome_projects/InfantGut.html], Additional sample data.
-
-
-
|