Metagenomic species profiling using universal phylogenetic marker genes

Nature Methods

Volumn 10, Issue 12, 2013, Pages 1196-1199

  Sunagawa, Shinichi ^a   Mende, Daniel R ^a   Zeller, Georg ^a   Izquierdo Carrasco, Fernando ^b   Berger, Simon A ^b   Kultima, Jens Roat ^a   Coelho, Luis Pedro ^a   Arumugam, Manimozhiyan ^a,c,d   Tap, Julien ^a,e   Nielsen, Henrik Bjørn ^f,g   Rasmussen, Simon ^f   Brunak, Søren ^f,g   Pedersen, Oluf ^c,h,i,j   Guarner, Francisco ^k   De Vos, Willem M ^l,m   Wang, Jun ^c,d,n,o,p   Li, Junhua ^d,q,r   Doré, Joël ^e,s   Dusko Ehrlich, S ^e   Stamatakis, Alexandros ^b,t   Bork, Peer ^a,u   more..

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^b HEIDELBERG INSTITUTE FOR THEORETICAL STUDIES   (Germany)

^c Capital Region   (Denmark)

^d BGI SHENZHEN   (China)

^e University of Paris Saclay   (France)

^f TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^g Chalmers University of Technology   (Denmark)

^h HAGEDORN RESEARCH INSTITUTE   (Denmark)

ⁱ UNIVERSITY OF COPENHAGEN   (Denmark)

^j AARHUS UNIVERSITY   (Denmark)

^k HOSPITAL UNIVERSITARI VALL D HEBRON   (Spain)

^l WAGENINGEN UNIVERSITY   (Netherlands)

^m UNIVERSITY OF HELSINKI   (Finland)

ⁿ KING ABDULAZIZ UNIVERSITY   (Saudi Arabia)

^o UNIVERSITY OF COPENHAGEN   (Denmark)

^p MACAU UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Macao)

^q GigaScience   (Hong Kong)

^r SOUTH CHINA UNIVERSITY OF TECHNOLOGY   (China)

^s UMR1319 MICALIS   (France)

^t KARLSRUHE INSTITUTE OF TECHNOLOGY   (Germany)

^u MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

more..

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; DNA 16S;

AMINO ACID SEQUENCE; ARTICLE; CYANOBACTERIUM; EURYARCHAEOTA; GENE IDENTIFICATION; GENETIC LINKAGE; HUMAN; MARKER GENE; METAGENOME; METAGENOMICS; MICROBIAL COMMUNITY; NONHUMAN; PHYLOGENY; POPULATION ABUNDANCE; PRIORITY JOURNAL; PROKARYOTE; SPECIES DIVERSITY; SPECIES IDENTIFICATION; SPECIES RICHNESS;

ALGORITHMS; CALIBRATION; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; DNA, RIBOSOMAL; GENETIC LINKAGE; GENETIC MARKERS; GENOME; HUMANS; INTESTINES; METAGENOMICS; MICROBIOTA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

EID: 84888884475     PISSN: 15487091     EISSN: 15487105     Source Type: Journal    
DOI: 10.1038/nmeth.2693     Document Type: Article

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