Community dynamics under environmental change: How can next generation mechanistic models improve projections of species distributions?

Ecological Modelling

Volumn 326, Issue , 2016, Pages 63-74

  Singer, Alexander ^a,b   Johst, Karin ^b   Banitz, Thomas ^b   Fowler, Mike S ^c   Groeneveld, Jürgen ^b   Gutiérrez, Alvaro G ^d   Hartig, Florian ^e   Krug, Rainer M ^f   Liess, Matthias ^b,g   Matlack, Glenn ^h   Meyer, Katrin M ⁱ   Pe'er, Guy ^b   Radchuk, Viktoriia ^a,j   Voinopol Sassu, Ana Johanna ^k   Travis, Justin M J ^l  

^a GERMAN CENTRE FOR INTEGRATIVE BIODIVERSITY RESEARCH IDIV HALLE JENA LEIPZIG   (Germany)

^b HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH UFZ   (Germany)

^c SWANSEA UNIVERSITY   (United Kingdom)

^d UNIVERSITY OF CHILE   (Chile)

^e UNIVERSITY OF FREIBURG   (Germany)

^f STELLENBOSCH UNIVERSITY   (South Africa)

^g RWTH AACHEN UNIVERSITY   (Germany)

^h OHIO UNIVERSITY   (United States)

ⁱ UNIVERSITY OF GÖTTINGEN   (Germany)

^j LEIBNIZ INSTITUTE FOR ZOO AND WILDLIFE RESEARCH   (Germany)

^k UNIVERSITY OF CANTERBURY   (New Zealand)

^l UNIVERSITY OF ABERDEEN   (United Kingdom)

more..

Author keywords

Bias; Precision; Prediction; Protocol; SDM; Species interaction; Uncertainty

Indexed keywords

ECOLOGY; FORECASTING; NETWORK PROTOCOLS; RELIABILITY; SPACE DIVISION MULTIPLE ACCESS;

BIAS; ECOLOGICAL INFORMATION; INTERSPECIFIC INTERACTIONS; PRECISION; PROJECTION UNCERTAINTY; SPECIES DISTRIBUTION MODELS; SPECIES INTERACTIONS; UNCERTAINTY;

POPULATION DISTRIBUTION;

COMMUNITY DYNAMICS; ECOLOGICAL MODELING; ENVIRONMENTAL CHANGE; GEOGRAPHICAL DISTRIBUTION; INTERSPECIFIC INTERACTION; INTRASPECIFIC INTERACTION; PRECISION; PREDICTION; RANGE EXPANSION; UNCERTAINTY ANALYSIS;

EID: 84960903374     PISSN: 03043800     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecolmodel.2015.11.007     Document Type: Article

References (162)

1. Albert C.H., Grassein F., Schurr F.M., Vieilledent G., Violle C. When and how should intraspecific variability be considered in trait-based plant ecology?. Perspect. Plant Ecol. Evol. Syst. 2011, 13:217-225. 10.1016/j.ppees.2011.04.003.
2. Anderson C.B., Vanessa Lencinas M., Wallem P.K., Valenzuela A.E.J., Simanonok M.P., Martínez Pastur G. Engineering by an invasive species alters landscape-level ecosystem function, but does not affect biodiversity in freshwater systems. Divers. Distrib. 2014, 20:214-222. 10.1111/ddi.12147.
3. Atkins K.E., Travis J.M.J. Local adaptation and the evolution of species' ranges under climate change. J. Theor. Biol. 2010, 266:449-457. 10.1016/j.jtbi.2010.07.014.
4. Augusiak J., Van den Brink P.J., Grimm V. Merging validation and evaluation of ecological models to "evaludation": a review of terminology and a practical approach. Ecol. Modell. 2014, 280:117-128. 10.1016/j.ecolmodel.2013.11.009.
5. Barabás G., Pásztor L., Meszéna G., Ostling A. Sensitivity analysis of coexistence in ecological communities: theory and application. Ecol. Lett. 2014, 17:1479-1494. 10.1111/ele.12350.
6. Bartomeus I., Ascher J.S., Wagner D., Danforth B.N., Colla S., Kornbluth S., Winfree R. Climate-associated phenological advances in bee pollinators and bee-pollinated plants. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:20645-20649. 10.1073/pnas.1115559108.
7. Bastolla U., Fortuna M.A., Pascual-Garcia A., Ferrera A., Luque B., Bascompte J. The architecture of mutualistic networks minimizes competition and increases biodiversity. Nature 2009, 458:1018-1020.
8. Bellard C., Bertelsmeier C., Leadley P., Thuiller W., Courchamp F. Impacts of climate change on the future of biodiversity. Ecol. Lett. 2012, 15:365-377. 10.1111/j.1461-0248.2011.01736.x.
9. Best A.S., Johst K., Münkemüller T., Travis J.M.J. Which species will successfully track climate change? The influence of intraspecific competition and density dependent dispersal on range shifting dynamics. Oikos 2007, 116:1531-1539.
10. Binzer A., Brose U., Curtsdotter A., Eklöf A., Rall B.C., Riede J.O., de Castro F. The susceptibility of species to extinctions in model communities. Basic Appl. Ecol. 2011, 12:590-599. 10.1016/j.baae.2011.09.002.
11. Blois J.L., Zarnetske P.L., Fitzpatrick M.C., Finnegan S. Climate change and the past, present, and future of biotic interactions. Science 2013, 341:499-504. 10.1126/science.1237184.
12. Bocedi G., Atkins K.E., Liao J., Henry R.C., Travis J.M.J., Hellmann J.J. Effects of local adaptation and interspecific competition on species' responses to climate change. Ann. N. Y. Acad. Sci. 2013, 1297:83-97. 10.1111/nyas.12211.
13. Bocedi G., Palmer S.C.F., Pe'er G., Heikkinen R.K., Matsinos Y.G., Watts K., Travis J.M.J. RangeShifter: a platform for modelling spatial eco-evolutionary dynamics and species' responses to environmental changes. Methods Ecol. Evol. 2014, 5:388-396. 10.1111/2041-210X. 12162.
14. Bonan G.B. Forests and climate change: forcings, feedbacks, and the climate benefits of forests. Science 2008, 320:1444-1449. 10.1126/science.1155121.
15. Borcard D., Gillet F., Legendre P. Numerical Ecology with R Media 2011, Springer, New York.
16. Boulangeat I., Gravel D., Thuiller W. Accounting for dispersal and biotic interactions to disentangle the drivers of species distributions and their abundances. Ecol. Lett. 2012, 15:584-593.
17. Bourne E.C., Bocedi G., Travis J.M.J., Pakeman R.J., Brooker R.W., Schiffers K. Between migration load and evolutionary rescue: dispersal, adaptation and the response of spatially structured populations to environmental change. Proc. R. Soc. B: Biol. Sci. 2014, 281:20132795. 10.1098/rspb.2013.2795.
18. Brooker R.W., Travis J.M.J., Clark E.J., Dytham C. Modelling species' range shifts in a changing climate: the impacts of biotic interactions, dispersal distance and the rate of climate change. J. Theor. Biol. 2007, 245:59-65.
19. Buckley L.B., Urban M.C., Angilletta M.J., Crozier L.G., Rissler L.J., Sears M.W. Can mechanism inform species' distribution models?. Ecol. Lett. 2010, 13:1041-1054. 10.1111/j.1461-0248.2010.01479.x.
20. Burton O.J., Phillips B.L., Travis J.M.J. Trade-offs and the evolution of life-histories during range expansion. Ecol. Lett. 2010, 13:1210-1220. 10.1111/j.1461-0248.2010.01505.x.
21. Buse J., Griebeler E.M. Incorporating classified dispersal assumptions in predictive distribution models - a case study with grasshoppers and bush-crickets. Ecol. Modell. 2011, 222:2130-2141.
22. Chen I.-C., Hill J.K., Ohlemüller R., Roy D.B., Thomas C.D. Rapid range shifts of species associated with high levels of climate warming. Science 2011, 333:1024-1026. 10.1126/science.1206432.
23. Chesson P. Mechanisms of maintenance of species diversity. Annu. Rev. Ecol. Syst. 2000, 31:343-366. 10.1146/annurev.ecolsys.31.1.343.
24. Chuine I., Beaubien E.G. Phenology is a major determinant of tree species range. Ecol. Lett. 2001, 4:500-510. 10.1046/j.1461-0248.2001.00261.x.
25. Cobben M.M.P., Verboom J., Opdam P.F.M., Hoekstra R.F., Jochem R., Arens P., Smulders M.J.M. Projected climate change causes loss and redistribution of genetic diversity in a model metapopulation of a medium-good disperser. Ecography 2011, 34:920-932. 10.1111/j.1600-0587.2011.06713.x.
26. Cobben M.M.P., Verboom J., Opdam P.F.M., Hoekstra R.F., Jochem R., Smulders M.J.M. Wrong place, wrong time: climate change-induced range shift across fragmented habitat causes maladaptation and declined population size in a modelled bird species. Glob. Change Biol. 2012, 18:2419-2428. 10.1111/j.1365-2486.2012.02711.x.
27. Davis M.B. Quaternary history and the stability of forest communities. Forest Succession 1981, 132-153. Springer.
28. De Cáceres M., Brotons L. Calibration of hybrid species distribution models: the value of general-purpose vs. targeted monitoring data. Divers. Distrib. 2012, 18:977-989. 10.1111/j.1472-4642.2012.00899.x.
29. DeAngelis D.L., Mooij W.M. Individual-based modeling of ecological and evolutionary processes. Annu. Rev. Ecol. Evol. Syst. 2005, 36:147-168. 10.1146/annurev.ecolsys.36.102003.152644.
30. Doak D.F., Estes J.A., Halpern B.S., Jacob U., Lindberg D.R., Lovvorn J., Monson D.H., Tinker M.T., Williams T.M., Wootton J.T., Carroll I., Emmerson M., Micheli F., Novak M. Understanding and predicting ecological dynamics: are major surprises inevitable?. Ecology 2008, 89:952-961.
31. Donalson D.D., Nisbet R.M. Population dynamics and spatial scale: effects of system size on population persistence. Ecology 1999, 80:2492-2507.
32. Dormann C.F. Promising the future? Global change projections of species distributions. Basic Appl. Ecol. 2007, 8:387-397. 10.1016/j.baae.2006.11.001.
33. Dormann C.F., Schymanski S.J., Cabral J., Chuine I., Graham C., Hartig F., Kearney M., Morin X., Römermann C., Schröder B., Singer A. Correlation and process in species distribution models: bridging a dichotomy. J. Biogeogr. 2012, 39:2119-2131. 10.1111/j.1365-2699.2011.02659.x.
34. Dullinger S., Gattringer A., Thuiller W., Moser D., Zimmermann N.E., Guisan A., Willner W., Plutzar C., Leitner M., Mang T., Caccianiga M., Dirnböck T., Ertl S., Fischer A., Lenoir J., Svenning J.-C., Psomas A., Schmatz D.R., Silc U., Vittoz P., Hülber K. Extinction debt of high-mountain plants under twenty-first-century climate change. Nat. Clim. Change 2012, 2:619-622. 10.1038/nclimate1514.
35. Dunne J.A., Williams R.J., Martinez N.D. Network structure and biodiversity loss in food webs: robustness increases with connectance. Ecol. Lett. 2002, 5:558-567. 10.1046/j.1461-0248.2002.00354.x.
36. Engler R., Guisan A. MigClim: predicting plant distribution and dispersal in a changing climate. Divers. Distrib. 2009, 15:590-601.
37. Evans M.R., Bithell M., Cornell S.J., Dall S.R.X., Díaz S., Emmott S., Ernande B., Grimm V., Hodgson D.J., Lewis S.L., Mace G.M., Morecroft M., Moustakas A., Murphy E., Newbold T., Norris K.J., Petchey O., Smith M., Travis J.M.J., Benton T.G. Predictive systems ecology. Proc. Biol. Sci. 2013, 280:20131452. 10.1098/rspb.2013.1452.
38. Fordham D.A., Mellin C., Russell B.D., Akçakaya R.H., Bradshaw C.J.A, Aiello-Lammens M.E., Caley J.M., Connell S.D., Mayfield S., Shepherd S.A., Brook B.W. Population dynamics can be more important than physiological limits for determining range shifts under climate change. Glob. Change Biol. 2013, 19:3224-3237. 10.1111/gcb.12289.
39. Fowler M.S., Ruokolainen L. Confounding environmental colour and distribution shape leads to underestimation of population extinction risk. PLOS ONE 2013, 8:e55855. 10.1371/journal.pone.0055855.
40. Fukami T., Nakajima M. Community assembly: alternative stable states or alternative transient states?. Ecol. Lett. 2011, 14:973-984. 10.1111/j.1461-0248.2011.01663.x.
41. Gallien L., Münkemüller T., Albert C.H., Boulangeat I., Thuiller W. Predicting potential distributions of invasive species: where to go from here?. Divers. Distrib. 2010, 16:331-342.
42. Geange S.W., Stier A.C. Order of arrival affects competition in two reef fishes. Ecology 2009, 90:2868-2878.
43. Gilman S.E., Urban M.C., Tewksbury J., Gilchrist G.W., Holt R.D. A framework for community interactions under climate change. Trends Ecol. Evol. 2010, 25:325-331. 10.1016/j.tree.2010.03.002.
44. Gould S.F., Beeton N.J., Harris R.M.B., Hutchinson M.F., Lechner A.M., Porfirio L.L., Mackey B.G. A tool for simulating and communicating uncertainty when modelling species distributions under future climates. Ecol. Evol. 2014, 4:4798-4811. 10.1002/ece3.1319.
45. Greenman J.V., Benton T.G. The amplification of environmental noise in population models: causes and consequences. Am. Nat. 2003, 161:225-239. 10.1086/345784.
46. Gregr E.J., Chan K.M.A. Leaps of faith: how implicit assumptions compromise the utility of ecosystem models for decision-making. Bioscience 2015, 65:43-54. 10.1093/biosci/biu185.
47. Grimm V., Railsback S.F. Individual-Based Modeling and Ecology 2005, Princeton University Press.
48. Grimm V., Railsback S.F. Pattern-oriented modelling: a "multi-scope" for predictive systems ecology. Philos. Trans. R. Soc. B: Biol. Sci. 2012, 367:298-310. 10.1098/rstb.2011.0180.
49. Grimm V., Berger U., Bastiansen F., Eliassen S., Ginot V., Giske J., Goss-Custard J., Grand T., Heinz S.K., Huse G., Huth A., Jepsen J.U., Jørgensen C., Mooij W.M., Müller B., Pe'er G., Piou C., Railsback S.F., Robbins A.M., Robbins M.M., Rossmanith E., Rüger N., Strand E., Souissi S., Stillman R.A., Vabø R., Visser U., DeAngelis D.L. A standard protocol for describing individual-based and agent-based models. Ecol. Modell. 2006, 198:115-126. 10.1016/j.ecolmodel.2006.04.023.
50. Guisan A., Thuiller W. Predicting species distribution: offering more than simple habitat models. Ecol. Lett. 2005, 8:993-1009. 10.1111/j.1461-0248.2005.00792.x.
51. Guisan A., Zimmermann N.E. Predictive habitat distribution models in ecology. Ecol. Modell. 2000, 135:147-186. 10.1016/S0304-3800(00)00354-9.
52. Guisan A., Lehmann A., Ferrier S., Austin M., Overton J.M.C., Aspinall R., Hastie T. Making better biogeographical predictions of species' distributions. J. Appl. Ecol. 2006, 43:386-392.
53. Haila Y., Henle K., Apostolopoulou E., Cent J., Framstad E., Goerg C., Jax K., Klenke R., Magnuson W., Matsinos Y., Mueller B., Paloniemi R., Pantis J., Rauschmayer F., Ring I., Settele J., Simila J., Touloumis K., Tzanopoulos J., Pe'er G. Confronting and coping with uncertainty in biodiversity research and praxis. Nat. Conserv. 2014, 8:45-75. 10.3897/natureconservation.8.5942.
54. Hartig F., Dyke J., Hickler T., Higgins S.I., O'Hara R.B., Scheiter S., Huth A. Connecting dynamic vegetation models to data - an inverse perspective. J. Biogeogr. 2012, 39:2240-2252.
55. Hartig F., Dislich C., Wiegand T., Huth A. Technical note: approximate Bayesian parameterization of a process-based tropical forest model. Biogeosciences 2014, 11:1261-1272. 10.5194/bg-11-1261-2014.
56. Hastings A. Transients: the key to long-term ecological understanding?. Trends Ecol. Evol. 2004, 19:39-45. 10.1016/j.tree.2003.09.007.
57. Hegland S.J., Nielsen A., Lázaro A., Bjerknes A.L., Totland Ø. How does climate warming affect plant-pollinator interactions?. Ecol. Lett. 2009, 10.1111/j.1461-0248.2008.01269.x.
58. Hendry A.P., Nosil P., Rieseberg L.H. The speed of ecological speciation. Funct. Ecol. 2007, 21:455-464. 10.1111/j.1365-2435.2006.01240.x.
59. Hickling R., Roy D.B., Hill J.K., Fox R., Thomas C.D. The distributions of a wide range of taxonomic groups are expanding polewards. Glob. Change Biol. 2006, 12:450-455. 10.1111/j.1365-2486.2006.01116.x.
60. Higgins S.I., Clark J.S., Nathan R., Hovestadt T., Schurr F., Fragoso J.M.V., Aguiar M.R., Ribbens E., Lavorel S. Forecasting plant migration rates: managing uncertainty for risk assessment. J. Ecol. 2003, 91:341-347. 10.1046/j.1365-2745.2003.00781.x.
61. Higgins S.I., O'Hara R.B., Römermann C. A niche for biology in species distribution models. J. Biogeogr. 2012, 39:2091-2095. 10.1111/jbi.12029.
62. Hill J.K., Griffiths H.M., Thomas C.D. Climate change and evolutionary adaptations at species' range margins. Annu. Rev. Entomol. 2011, 56:143-159. 10.1146/annurev-ento-120709-144746.
63. Hobbs R.J., Higgs E., Harris J.A. Novel ecosystems: implications for conservation and restoration. Trends Ecol. Evol. 2009, 24:599-605. 10.1016/j.tree.05.012.2009.
64. Johnson J.B., Omland K.S. Model selection in ecology and evolution. Trends Ecol. Evol. 2004, 19:101-108. 10.1016/j.tree.2003.10.013.
65. Johst K., Drechsler M. Are spatially correlated or uncorrelated disturbance regimes better for the survival of species?. Oikos 2003, 103:449-456. 10.1034/j.1600-0706.2003.12770.x.
66. Johst K., Wissel C. Extinction risk in a temporally correlated fluctuating environment. Theor. Popul. Biol. 1997, 52:91-100.
67. Johst K., Lima M., Berryman A.A. Scaling up: how do exogenous fluctuations in individual-based resource competition models re-emerge in aggregated stochastic population models?. Popul. Ecol. 2013, 55:173-182. 10.1007/s10144-012--2.0345.
68. Jones K.E., Bielby J., Cardillo M., Fritz S.A., O'Dell J., Orme C.D.L., Safi K., Sechrest W., Boakes E.H., Carbone C., Connolly C., Cutts M.J., Foster J.K., Grenyer R., Habib M., Plaster C.A., Price S.A., Rigby E.A., Rist J., Teacher A., Bininda-Emonds O.R.P., Gittleman J.L., Mace G.M., Purvis A. PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology 2009, 90:2648. 10.1890/08-1494.1.
69. Jopp F., Jørgensen S.E., Trexler M., Reuter H., DeAngelis D.L., Breckling B. Modelling Complex Ecological Dynamics: An Introduction into Ecological Modelling for Students Teachers & Scientists 2011, Springer Science & Business Media.
70. Jump A.S., Huang T.J., Chou C.H. Rapid altitudinal migration of mountain plants in Taiwan and its implications for high altitude biodiversity. Ecography 2012, 35:204-210. 10.1111/j.1600-0587.2011.06984.x.
71. Kattge J., Díaz S., Lavorel S., Prentice I.C., Leadley P., Bönisch G., Garnier E., Westoby M., Reich P.B., Wright I.J., Cornelissen J.H.C., Violle C., Harrison S.P., Van Bodegom P.M., Reichstein M., Enquist B.J., Soudzilovskaia N.A., Ackerly D.D., Anand M., Atkin O., Bahn M., Baker T.R., Baldocchi D., Bekker R., Blanco C.C., Blonder B., Bond W.J., Bradstock R., Bunker D.E., Casanoves F., Cavender-Bares J., Chambers J.Q., Chapin F.S., Chave J., Coomes D., Cornwell W.K., Craine J.M., Dobrin B.H., Duarte L., Durka W., Elser J., Esser G., Estiarte M., Fagan W.F., Fang J., Fernández-Méndez F., Fidelis a., Finegan B., Flores O., Ford H., Frank D., Freschet G.T., Fyllas N.M., Gallagher R.V., Green W.A., Gutierrez A.G., Hickler T., Higgins S.I., Hodgson J.G., Jalili A., Jansen S., Joly C.A., Kerkhoff A.J., Kirkup D., Kitajima K., Kleyer M., Klotz S., Knops J.M.H., Kramer K., Kühn I., Kurokawa H., Laughlin D., Lee T.D., Leishman M., Lens F., Lenz T., Lewis S.L., Lloyd J., Llusià J., Louault F., Ma S., Mahecha M.D., Manning P., Massad T., Medlyn B.E., Messier J., Moles A.T., Müller S.C., Nadrowski K., Naeem S., Niinemets Ü., Nöllert S., Nüske A., Ogaya R., Oleksyn J., Onipchenko V.G., Onoda Y., Ordoñez J., Overbeck G., Ozinga W.A., Patiño S., Paula S., Pausas J.G., Peñuelas J., Phillips O.L., Pillar V., Poorter H., Poorter L., Poschlod P., Prinzing A., Proulx R., Rammig A., Reinsch S., Reu B., Sack L., Salgado-Negret B., Sardans J., Shiodera S., Shipley B., Siefert A., Sosinski E., Soussana J.F., Swaine E., Swenson N., Thompson K., Thornton P., Waldram M., Weiher E., White M., White S., Wright S.J., Yguel B., Zaehle S., Zanne A.E., Wirth C. TRY - a global database of plant traits. Glob. Change Biol. 2011, 17:2905-2935. 10.1111/j.1365-2486.2011.02451.x.
72. Kearney M., Porter W. Mechanistic niche modelling: combining physiological and spatial data to predict species' ranges. Ecol. Lett. 2009, 12:334-350. 10.1111/j.1461-0248.2008.01277.x.
73. Kearney M., Phillips B.L., Tracy C.R., Christian K.A., Betts G., Porter W.P. Modelling species distributions without using species distributions: the cane toad in Australia under current and future climates. Ecography 2008, 31:423-434. 10.1111/j.0906-7590.2008.05457.x.
74. Keil P., Schweiger O., Kühn I., Kunin W.E., Kuussaari M., Settele J., Henle K., Brotons L., Pe'er G., Lengyel S., Moustakas A., Steinicke H., Storch D. Patterns of beta diversity in Europe: the role of climate, land cover and distance across scales. J. Biogeogr. 2012, 39:1473-1486. 10.1111/j.1365-2699.2012.02701.x.
75. Kissling W.D., Field R., Korntheuer H., Heyder U., Böhning-Gaese K. Woody plants and the prediction of climate-change impacts on bird diversity. Philos. Trans. R. Soc. Lond. B: Biol. Sci. 2010, 365:2035-2045. 10.1098/rstb.2010.0008.
76. Kissling W.D., Dormann C.F., Groeneveld J., Hickler T., Kühn I., McInerny G.J., Montoya J.M., Römermann C., Schiffers K., Schurr F.M., Singer A., Svenning J.-C., Zimmermann N.E., O'Hara R.B. Towards novel approaches to modelling biotic interactions in multispecies assemblages at large spatial extents. J. Biogeogr. 2012, 39:2163-2178. 10.1111/j.1365-2699.2011.02663.x.
77. Kopp M., Matuszewski S. Rapid evolution of quantitative traits: theoretical perspectives. Evol. Appl. 2014, 7:169-191. 10.1111/eva.12127.
78. Lavorel S., Garnier E. Predicting changes in community composition and ecosystem functioning from plant traits: revisiting the Holy Grail. Funct. Ecol. 2002, 16:545-556.
79. Laws A.N., Joern A. Predator-prey interactions in a grassland food chain vary with temperature and food quality. Oikos 2013, 122:977-986. 10.1111/j.1600-0706.2012.20419.x.
80. Leadley P.W., Krug C.B., Alkemade R., Pereira H.M., Sumaila U.R., Walpole M., Marques A., Newbold T., Teh L.S., van Kolck J., Bellard C., Januchowski-Hartley S.R., Mumby P.J. Progress Towards the Aichi Biodiversity Targets: An Assessment of Biodiversity Trends, Policy Scenarios and Key Actions. Technical Series. Montreal, Canada 2014.
81. Lenoir J., Gégout J.C., Marquet P.A., de Ruffray P., Brisse H. A significant upward shift in plant species optimum elevation during the 20th century. Science 2008, 320:1768-1771. 10.1126/science.1156831.
82. Levins R. The strategy of model building in population biology. Am. Sci. 1966, 54:421-431.
83. Liess M., Foit K. Intraspecific competition delays recovery of population structure. Aquat. Toxicol. 2010, 97:15-22. 10.1016/j.aquatox.2009.11.018.
84. Liess M., Schäfer R.B., Schriever C.A. The footprint of pesticide stress in communities - species traits reveal community effects of toxicants. Sci. Total Environ. 2008, 406:484-490. 10.1016/j.scitotenv.2008.05.054.
85. Lischke H., Zimmermann N.E., Bolliger J., Rickebusch S., Löffler T.J. TreeMig: a forest-landscape model for simulating spatio-temporal patterns from stand to landscape scale. Ecol. Modell. 2006, 199:409-420.
86. Loreau M. Linking biodiversity and ecosystems: towards a unifying ecological theory. Philos. Trans. R. Soc. Lond. B: Biol. Sci. 2010, 365:49-60. 10.1098/rstb.2009.0155.
87. Lurgi M., Brook B.W., Saltré F., Fordham D.A. Modelling range dynamics under global change: which framework and why?. Methods Ecol. Evol. 2015, 6:247-256. 10.1111/2041-210X. 12315.
88. Marion G., McInerny G.J., Pagel J., Catterall S., Cook A.R., Hartig F., O'Hara R.B. Parameter and uncertainty estimation for process-oriented population and distribution models: data, statistics and the niche. J. Biogeogr. 2012, 39:2225-2239. 10.1111/j.1365-2699.2012.02772.x.
89. Martin B.T., Nisbet R.M., Pike A., Michel C.J., Danner E.M. Sport science for salmon and other species: ecological consequences of metabolic power constraints. Ecol. Lett. 2015, 18:535-544. 10.1111/ele.12433.
90. Matlack G.R., Leu N.A. Persistence of dispersal-limited species in structured dynamic landscapes. Ecosystems 2007, 10:1287-1298. 10.1007/s10021-007--9.9097.
91. Matthiopoulos J., Fieberg J., Aarts G., Beyer H.L., Morales J.M., Haydon D.T. Establishing the link between habitat selection and animal population dynamics. Ecol. Monogr. 2015, 85:413-436. 10.1890/14-2244.1.
92. Meier E.S., Pearman P.B., Svenning J.C., Thuiller W., Araujo M.B., Guisan A., Zimmermann N.E. Biotic and abiotic variables show little redundancy in explaining tree species distributions. Ecography 2010, 33:1038-1048.
93. Meier E.S., Lischke H., Schmatz D.R., Zimmermann N.E. Climate, competition and connectivity affect future migration and ranges of European trees. Glob. Ecol. Biogeogr. 2012, 21:164-178.
94. Memmott J., Craze P.G., Waser N.M., Price M.V. Global warming and the disruption of plant-pollinator interactions. Ecol. Lett. 2007, 10:710-717.
95. Menendez R., Gonzalez-Megias A., Lewis O.T., Shaw M.R., Thomas C.D. Escape from natural enemies during climate-driven range expansion: a case study. Ecol. Entomol. 2008, 33:413-421.
96. Meyer K.M., Mooij W.M., Vos M., Hol W.H.G., van der Putten W.H. The power of simulating experiments. Ecol. Modell. 2009, 220:2594-2597. 10.1016/j.ecolmodel.2009.06.001.
97. Moir M.L., Hughes L., Vesk P.A., Leng M.C. Which host-dependent insects are most prone to coextinction under changed climates?. Ecol. Evol. 2014, 4:1295-1312. 10.1002/ece3.1021.
98. Moran E.V., Hartig F., Bell D.M. Intraspecific trait variation across scales: implications for understanding global change responses. Glob. Change Biol. 2016, 22:137-150. 10.1111/gcb.13000.
99. Morin X., Augspurger C., Chuine I. Process-based modeling of species' distributions: what limits temperate tree species' range boundaries?. Ecology 2007, 88:2280-2291. 10.1890/06-1591.1.
100. Morin X., Viner D., Chuine I. Tree species range shifts at a continental scale: new predictive insights from a process-based model. J. Ecol. 2008, 96:784-794. 10.1111/j.1365-2745.2008.01369.x.
101. Moss R.H., Edmonds J.A., Hibbard K.A., Manning M.R., Rose S.K., van Vuuren D.P., Carter T.R., Emori S., Kainuma M., Kram T., Meehl G.A., Mitchell J.F.B., Nakicenovic N., Riahi K., Smith S.J., Stouffer R.J., Thomson A.M., Weyant J.P., Wilbanks T.J. The next generation of scenarios for climate change research and assessment. Nature 2010, 463:747-756. 10.1038/nature08823.
102. Mouquet N., Lagadeuc Y., Devictor V., Doyen L., Duputié A., Eveillard D., Faure D., Garnier E., Gimenez O., Huneman P., Jabot F., Jarne P., Joly D., Julliard R., Kéfi S., Kergoat G.J., Lavorel S., Le Gall L., Meslin L., Morand S., Morin X., Morlon H., Pinay G., Pradel R., Schurr F.M., Thuiller W., Loreau M. Predictive ecology in a changing world. J. Appl. Ecol. 2015, 52:1293-1310. 10.1111/1365-2664.12482.
103. Münkemüller T., Reineking B., Travis J., Bugmann H., Johst K. Disappearing refuges in time and space: how environmental change threatens species coexistence. Theor. Ecol. 2009, 2:217-227.
104. Münkemüller T., Travis M.J., Burton O.J., Schiffers K., Johst K. Density-regulated population dynamics and conditional dispersal alter the fate of mutations occurring at the front of an expanding population. Heredity (Edinb) 2011, 106:678-689. 10.1038/hdy.2010.107.
105. Norberg J., Urban M.C., Vellend M., Klausmeier C.A., Loeuille N. Eco-evolutionary responses of biodiversity to climate change. Nat. Clim. Change 2012, 2:747-751. 10.1038/nclimate1588.
106. Pagel J., Schurr F.M. Forecasting species ranges by statistical estimation of ecological niches and spatial population dynamics. Glob. Ecol. Biogeogr. 2012, 21:293-304. 10.1111/j.1466-8238.2011.00663.x.
107. Parmesan C. Ecological and evolutionary responses to recent climate change. Annu. Rev. Ecol. Evol. Syst. 2006, 37:637-669. 10.1146/annurev.ecolsys.37.091305.110100.
108. Parmesan C., Yohe G. A globally coherent fingerprint of climate change impacts across natural systems. Nature 2003, 421:37-42.
109. Parmesan C., Ryrholm N., Stefanescu C., Hillk J.K., Thomas C.D., Descimon H., Huntleyk B., Kaila L., Kullberg J., Tammaru T., Tennent W.J., Thomas J.A., Warren M. Poleward shifts in geographical ranges of butterfly species associated with regional warming. Nature 1999, 399:579-583. 10.1038/21181.
110. Pateman R.M., Hill J.K., Roy D.B., Fox R., Thomas C.D. Temperature-dependent alterations in host use drive rapid range expansion in a butterfly. Science 2012, 336:1028-1030.
111. Pe'er G., Matsinson Y.G., Johst K., Franz K.W., Turlure C., Radchuk V., Malinowska A.H., Curtis J.M.R., Naujokaitis-Lewis I., Wintle B.A., Henle K. A protocol for better design, application, and communication of population viability analyses. Conserv. Biol. 2013, 27:644-656. 10.1111/cobi.12076.
112. Pe'er G., Tsianou M.A., Franz K.W., Matsinos Y.G., Mazaris A.D., Storch D., Kopsova L., Verboom J., Baguette M., Stevens V.M., Henle K. Toward better application of minimum area requirements in conservation planning. Biol. Conserv. 2014, 170:92-102. 10.1016/j.biocon.2013.12.011.
113. Petchey O.L., Pontarp M., Massie T.M., Kéfi S., Ozgul A., Weilenmann M., Palamara G.M., Altermatt F., Matthews B., Levine J.M., Childs D.Z., McGill B.J., Schaepman M.E., Schmid B., Spaak P., Beckerman A.P., Pennekamp F., Pearse I.S. The ecological forecast horizon, and examples of its uses and determinants. Ecol. Lett. 2015, 18:597-611. 10.1111/ele.12443.
114. Peterson G.D., Cumming G.S., Carpenter S.R. Scenario planning: a tool for conservation in an uncertain world. Conserv. Biol. 2003, 17:358-366. 10.1046/j.1523-1739.2003.01491.x.
115. Pickett S.T., White P.S. The Ecology of Natural Disturbance and Patch Dynamics 1985, Academic Press.
116. Polce C., Garratt M.P., Termansen M., Ramirez-Villegas J., Challinor A.J., Lappage M.G., Boatman N.D., Crowe A., Endalew A.M., Potts S.G., Somerwill K.E., Biesmeijer J.C. Climate-driven spatial mismatches between British orchards and their pollinators: increased risks of pollination deficits. Glob. Change Biol. 2014, 20:2815-2828. 10.1111/gcb.12577.
117. Radchuk V., Johst K., Groeneveld J., Grimm V., Schtickzelle N. Behind the scenes of population viability modeling: predicting butterfly metapopulation dynamics under climate change. Ecol. Modell. 2013, 259:62-73. 10.1016/j.ecolmodel.2013.03.014.
118. Refsgaard J.C., van der Sluijs J.P., Højberg A.L., Vanrolleghem P.A. Uncertainty in the environmental modelling process - a framework and guidance. Environ. Model. Softw. 2007, 22:1543-1556. 10.1016/j.envsoft.02.004.2007.
119. Ripa J., Heino M. Linear analysis solves two puzzles in population dynamics: the route to extinction and extinction in coloured environments. Ecol. Lett. 1999, 2:219-222. 10.1046/j.1461-0248.1999.00073.x.
120. Root T.L., Price J.T., Hall K.R., Schneider S.H., Rosenzweig C., Pounds J.A. Fingerprints of global warming on wild animals and plants. Nature 2003, 421:57-60.
121. Ruokolainen L., Fowler M.S. Community extinction patterns in coloured environments. Proc. R. Soc. B 2008, 275:1775-1783. 10.1098/rspb.2008.0193.
122. Saino N., Ambrosini R., Rubolini D., von Hardenberg J., Provenzale A., Hüppop K., Hüppop O., Lehikoinen A., Lehikoinen E., Rainio K., Romano M., Sokolov L. Climate warming, ecological mismatch at arrival and population decline in migratory birds. Proc. Biol. Sci. 2011, 278:835-842. 10.1098/rspb.2010.1778.
123. Salguero-Gómez R., Jones O.R., Archer C.R., Buckley Y.M., Che-Castaldo J., Caswell H., Hodgson D., Scheuerlein A., Conde D.A., Brinks E., de Buhr H., Farack C., Gottschalk F., Hartmann A., Henning A., Hoppe G., Römer G., Runge J., Ruoff T., Wille J., Zeh S., Davison R., Vieregg D., Baudisch A., Altwegg R., Colchero F., Dong M., de Kroon H., Lebreton J.-D., Metcalf C.J.E., Neel M.M., Parker I.M., Takada T., Valverde T., Vélez-Espino L.A., Wardle G.M., Franco M., Vaupel J.W. The compadre Plant Matrix Database: an open online repository for plant demography. J. Ecol. 2015, 103:202-218. 10.1111/1365-2745.12334.
124. Saltelli A., Chan K., Scott E.M. Sensitivity Analysis 2000, Wiley, New York.
125. Sanders D., van Veen F.J.F. Ecosystem engineering and predation: the multi-trophic impact of two ant species. J. Anim. Ecol. 2011, 80:569-576. 10.1111/j.1365-2656.2010.01796.x.
126. Scheller R.M., Mladenoff D.J. Simulated effects of climate change, fragmentation, and inter-specific competition on tree species migration in northern Wisconsin, USA. Clim. Res. 2008, 36:191-202. 10.3354/cr00745.
127. Schmolke A., Thorbek P., DeAngelis D.L., Grimm V. Ecological models supporting environmental decision making: a strategy for the future. Trends Ecol. Evol. 2010, 25:479-486. 10.1016/j.tree.2010.05.001.
128. Schurr F.M., Pagel J., Cabral J.S., Groeneveld J., Bykova O., O'Hara R.B., Hartig F., Kissling W.D., Linder H.P., Midgley G.F., Schröder B., Singer A., Zimmermann N.E. How to understand species' niches and range dynamics: a demographic research agenda for biogeography. J. Biogeogr. 2012, 39:2146-2162. 10.1111/j.1365-2699.2012.02737.x.
129. Schweiger O., Settele J., Kudrna O., Klotz S., Kühn I. Climate change can cause spatial mismatch of trophically interacting species. Ecology 2008, 89:3472-3479. 10.1890/07-1748.1.
130. Singer A., Kauhala K., Holmala K., Smith G.C. Rabies in northeastern Europe - the threat from invasive raccoon dogs. J. Wildl. Dis. 2009, 45:1121-1137. 10.7589/0090-3558-45.4.1121.
131. Singer A., Travis J.M.J., Johst K. Interspecific interactions affect species and community responses to climate shifts. Oikos 2013, 122:358-366. 10.1111/j.1600-0706.2012.20465.x.
132. Smith G.C., Parrott D., Robertson P.A. Managing wildlife populations with uncertainty: cormorants Phalacrocorax carbo. J. Appl. Ecol. 2008, 45:1675-1682. 10.1111/j.1365-2664.2008.01380.x.
133. Snell R.S., Huth A., Nabel J.E.M.S., Bocedi G., Travis J.M.J., Gravel D., Bugmann H., Gutiérrez A.G., Hickler T., Higgins S.I., Reineking B., Scherstjanoi M., Zurbriggen N., Lischke H. Using dynamic vegetation models to simulate plant range shifts. Ecography 2014, 37:1184-1197. 10.1111/ecog.00580.
134. Spangenberg J.H., Bondeau A., Carter T.R., Fronzek S., Jaeger J., Jylhä K., Kühn I., Omann I., Paul A., Reginster I., Rounsevell M., Schweiger O., Stocker A., Sykes M.T., Settele J. Scenarios for investigating risks to biodiversity. Glob. Ecol. Biogeogr. 2012, 21:5-18. 10.1111/j.1466-8238.2010.00620.x.
135. Stenseth N., Durant J., Fowler M.S., Matthysen E., Adriaensen F., Jonzen N., Chan K., Liu H., De Laet J., Sheldon B., Visser M., Dhondt A. Testing for effects of climate change on competitive relationships and coexistence between two bird species. Proc. R. Soc. B 2015, 282:20141958. 10.1098/rspb.2014.1958.
136. Svenning J.-C., Condit R. Biodiversity in a warmer world. Science 2008, 322:206-207. 10.1126/science.1164542.
137. Svenning J.-C., Gravel D., Holt R.D., Schurr F.M., Thuiller W., Münkemüller T., Schiffers K.H., Dullinger S., Edwards T.C., Hickler T., Higgins S.I., Nabel J.E.M.S., Pagel J., Normand S. The influence of interspecific interactions on species range expansion rates. Ecography 2014, 37:1-12. 10.1111/j.1600-0587.2013.00574.x.
138. Swab R.M., Regan H.M., Matthies D., Becker U., Bruun H.H. The role of demography, intra-species variation, and species distribution models in species' projections under climate change. Ecography 2015, 38:221-230. 10.1111/ecog.00585.
139. Thébault E., Fontaine C. Stability of ecological communities and the architecture of mutualistic and trophic networks. Science 2010, 329:853-856. 10.1126/science.1188321.
140. Thomas C.D., Bodsworth E.J., Wilson R.J., Simmons A.D., Davies Z.G., Musche M., Conradt L. Ecological and evolutionary processes at expanding range margins. Nature 2001, 411:577-581. 10.1038/35079066.
141. Thuiller W. Patterns and uncertainties of species' range shifts under climate change. Glob. Change Biol. 2004, 10:2020-2027. 10.1111/j.1365-2486.2004.00859.x.
142. Thuiller W., Araújo M.B., Pearson R.G., Whittaker R.J., Brotons L., Lavorel S. Biodiversity conservation: uncertainty in predictions of extinction risk. Nature 2004, 430. 10.1038/nature02716.
143. Thuiller W., Münkemüller T., Lavergne S., Mouillot D., Mouquet N., Schiffers K., Gravel D. A road map for integrating eco-evolutionary processes into biodiversity models. Ecol. Lett. 2013, 16(Suppl. 1):94-105. 10.1111/ele.12104.
144. Topping C.J., Alrøe H.F., Farrell K.N., Grimm V. Per Aspera ad Astra: through complex population modeling to predictive theory. Am. Nat. 2015, 186:669-674. 10.1086/683181.
145. Travis J.M.J., Brooker R.W., Clark E.J., Dytham C. The distribution of positive and negative species interactions across environmental gradients on a dual-lattice model. J. Theor. Biol. 2006, 241:896-902.
146. Travis J.M.J., Münkemüller T., Burton O.J., Best A., Dytham C., Johst K. Deleterious mutations can surf to high densities on the wave front of an expanding population. Mol. Biol. Evol. 2007, 24:2334-2343. 10.1093/molbev/msm167.
147. Travis J.M.J., Mustin K., Benton T.G., Dytham C. Accelerating invasion rates result from the evolution of density-dependent dispersal. J. Theor. Biol. 2009, 259:151-158.
148. Travis J.M.J., Delgado M., Bocedi G., Baguette M., Bartoń K., Bonte D., Boulangeat I., Hodgson J.A., Kubisch A., Penteriani V., Saastamoinen M., Stevens V.M., Bullock J.M. Dispersal and species' responses to climate change. Oikos 2013, 122:1532-1540. 10.1111/j.1600-0706.2013.00399.x.
149. Urban M.C. Accelerating extinction risk from climate change. Science 2015, 348:571-573. 10.1126/science.aaa4984.
150. Václavík T., Meentemeyer R.K. Equilibrium or not? Modelling potential distribution of invasive species in different stages of invasion. Divers. Distrib. 2012, 18:73-83. 10.1111/j.1472-4642.2011.00854.x.
151. Valladares F., Matesanz S., Araujo M.B., Balaguer L., Benito-Garzon M., Cornwell W.K., Gianoli E., Guilhaumon F., van Kleunen M., Naya D., Nicotra A.B., Poorter H., Zavala M. The effects of phenotypic plasticity and local adaptation on forecasts of species range shifts under climate change. Ecol. Lett. 2014, 17:1351-1364. 10.1111/ele.12348.
152. Van der Vaart E., Beaumont M.A., Johnston A.S.A., Sibly R.M. Calibration and evaluation of individual-based models using Approximate Bayesian Computation. Ecol. Modell. 2015, 312:182-190. 10.1016/j.ecolmodel.2015.05.020.
153. Van Nes E.H., Scheffer M. Alternative attractors may boost uncertainty and sensitivity in ecological models. Ecol. Modell. 2003, 159:117-124. 10.1016/S0304-3800(02)00278-8.
154. Violle C., Jiang L. Towards a trait-based quantification of species niche. J. Plant Ecol. 2009, 2:87-93.
155. Voigt W., Perner J., Davis A.J., Eggers T., Schumacher J., Bährmann R., Fabian B., Heinrich W., Köhler G., Lichter D., Marstaller R., Sander F.W. Trophic levels are differentially sensitive to climate. Ecology 2003, 84:2444-2453. 10.1890/02-0266.
156. Walther G.-R. Community and ecosystem responses to recent climate change. Philos. Trans. R. Soc. Lond. B: Biol. Sci. 2010, 365:2019-2024. 10.1098/rstb.2010.0021.
157. Walther G.R., Berger S., Sykes M.T. An ecological "footprint" of climate change. Proc. R. Soc. B: Biol. Sci. 2005, 272:1427-1432.
158. Wiegand T., Jeltsch F., Hanski I., Grimm V. Using pattern-oriented modeling for revealing hidden information: a key for reconciling ecological theory and application. Oikos 2003, 100:209-222.
159. Woodward F.I., Williams B.G. Climate and plant distribution at global and local scales. Theory and Models in Vegetation Science 1987, 189-197. Springer, Netherlands. 10.1007/978-94-009-4061-1. I.C. Prentice, E. van der Maarel (Eds.).
160. Zarnetske P.L., Skelly D.K., Urban M.C. Biotic multipliers of climate change. Science 2012, 336:1516-1518. 10.1126/science.1222732.
161. Zurell D., Jeltsch F., Dormann C.F., Schröder B. Static species distribution models in dynamically changing systems: how good can predictions really be?. Ecography 2009, 32:733-744. 10.1111/j.1600-0587.2009.05810.x.
162. Zurell D., Grimm V., Rossmanith E., Zbinden N., Zimmermann N.E., Schröder B. Uncertainty in predictions of range dynamics: black grouse climbing the Swiss Alps. Ecography 2012, 35:590-603. 10.1111/j.1600-0587.2011.07200.x.