Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters

Genome Biology and Evolution

Volumn 5, Issue 11, 2013, Pages 2109-2123

  Timme, Ruth E ^a   Pettengill, James B ^a   Allard, Marc W ^a   Strain, Errol ^a   Barrangou, Rodolphe ^b   Wehnes, Chris ^c   Van Kessel, Joann S ^d   Karns, Jeffrey S ^d   Musser, Steven M ^a   Brown, Eric W ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

^c DUPONT COMPANY   (United States)

^d AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Comparative method; CRISPR; H antigens; Lineage through time plot; O antigens; Serovar

Indexed keywords

O ANTIGEN;

ARTICLE; BACTERIAL GENOME; CLASSIFICATION; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEAT; COMPARATIVE METHOD; GENETICS; H ANTIGENS; HORIZONTAL GENE TRANSFER; LINEAGE-THROUGH-TIME PLOT; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SALMONELLA ENTERICA; SEROTYPE; SINGLE NUCLEOTIDE POLYMORPHISM;

COMPARATIVE METHOD; CRISPR; H ANTIGENS; LINEAGE-THROUGH-TIME PLOT; O ANTIGENS; SEROVAR;

BASE SEQUENCE; CLUSTERED REGULARLY INTERSPACED SHORT PALINDROMIC REPEATS; EVOLUTION, MOLECULAR; GENE TRANSFER, HORIZONTAL; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; O ANTIGENS; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; SALMONELLA ENTERICA;

EID: 84892665620     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evt159     Document Type: Article

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