-
1
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
Aparicio, S., Chapman, J., Stupka, E., Putnam, N., Chia, J., Dehal, P., et al. (2002) Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297 : 1301 1310.
-
(2002)
Science
, vol.297
, pp. 1301-1310
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
Putnam, N.4
Chia, J.5
Dehal, P.6
-
2
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
Barrangou, R., Fremaux, C., Deveau, H., Richards, M., Boyaval, P., Moineau, S., et al. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315 : 1709 1712.
-
(2007)
Science
, vol.315
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
-
3
-
-
23844505202
-
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
-
Bolotin, A., Ouinquis, B., Sorokin, A. Ehrlich, S.D. (2005) Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology-Sgm 151 : 2551 2561.
-
(2005)
Microbiology-Sgm
, vol.151
, pp. 2551-2561
-
-
Bolotin, A.1
Ouinquis, B.2
Sorokin, A.3
Ehrlich, S.D.4
-
4
-
-
33645313846
-
Chromosome evolution in the Thermotogales: Large-scale inversions and strain diversification of CRISPR sequences
-
DeBoy, R.T., Mongodin, E.F., Emerson, J.B. Nelson, K.E. (2006) Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences. J Bacteriol 188 : 2364 2374.
-
(2006)
J Bacteriol
, vol.188
, pp. 2364-2374
-
-
Deboy, R.T.1
Mongodin, E.F.2
Emerson, J.B.3
Nelson, K.E.4
-
5
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology under extreme hydrogeological conditions
-
Edwards, R.A., Rodriguez-Brito, B., Wegley, L., Haynes, M., Breitbart, M., Peterson, D.M., et al. (2006) Using pyrosequencing to shed light on deep mine microbial ecology under extreme hydrogeological conditions. BMC Genomics 7 : 57.
-
(2006)
BMC Genomics
, vol.7
, pp. 57
-
-
Edwards, R.A.1
Rodriguez-Brito, B.2
Wegley, L.3
Haynes, M.4
Breitbart, M.5
Peterson, D.M.6
-
6
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing, B. Green, P. (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8 : 186 194.
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
7
-
-
0031899252
-
IS6110 transposition and evolutionary scenario of the direct repeat locus in a group of closely related Mycobacterium tuberculosis strains
-
Fang, Z., Morrison, N., Watt, B., Doig, C. Forbes, K.J. (1998) IS6110 transposition and evolutionary scenario of the direct repeat locus in a group of closely related Mycobacterium tuberculosis strains. J Bacteriol 180 : 2102 2109.
-
(1998)
J Bacteriol
, vol.180
, pp. 2102-2109
-
-
Fang, Z.1
Morrison, N.2
Watt, B.3
Doig, C.4
Forbes, K.J.5
-
8
-
-
33744941078
-
The repetitive DNA elements called CRISPRs and their associated genes: Evidence of horizontal transfer among prokaryotes
-
Godde, J.S. Bickerton, A. (2006) The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J Mol Evol 62 : 718 729.
-
(2006)
J Mol Evol
, vol.62
, pp. 718-729
-
-
Godde, J.S.1
Bickerton, A.2
-
9
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
Haft, D.H., Selengut, J., Mongodin, E.F. Nelson, K.E. (2005) A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 1 : 474 483.
-
(2005)
PLoS Comput Biol
, vol.1
, pp. 474-483
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
10
-
-
0036267740
-
Identification of genes that are associated with DNA repeats in prokaryotes
-
Jansen, R., van Embden, J.D.A., Gaastra, W. Schouls, L.M. (2002) Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 43 : 1565 1575.
-
(2002)
Mol Microbiol
, vol.43
, pp. 1565-1575
-
-
Jansen, R.1
Van Embden, J.D.A.2
Gaastra, W.3
Schouls, L.M.4
-
11
-
-
35748974534
-
Evolutionary conservation of sequence and secondary structures in CRISPR repeats
-
Kunin, V., Sorek, R. Hugenholtz, P. (2007) Evolutionary conservation of sequence and secondary structures in CRISPR repeats. Genome Biol 8 : R61.
-
(2007)
Genome Biol
, vol.8
-
-
Kunin, V.1
Sorek, R.2
Hugenholtz, P.3
-
12
-
-
33748096466
-
A putative viral defence mechanism in archaeal cells
-
Lillestol, R.K., Redder, P., Garrett, R.A. Brugger, K. (2006) A putative viral defence mechanism in archaeal cells. Archaea 2 : 59 72.
-
(2006)
Archaea
, vol.2
, pp. 59-72
-
-
Lillestol, R.K.1
Redder, P.2
Garrett, R.A.3
Brugger, K.4
-
13
-
-
34047169728
-
Recombinant genome dynamics revealed in natural bacterial populations involved in acid mine drainage formation
-
Lo, I., Denef, V.J., Verberkmoes, N.C., Shah, M.B., Goltsman, D., Dibartolo, G., et al. (2007) Recombinant genome dynamics revealed in natural bacterial populations involved in acid mine drainage formation. Nature 446 : 537 541.
-
(2007)
Nature
, vol.446
, pp. 537-541
-
-
Lo, I.1
Denef, V.J.2
Verberkmoes, N.C.3
Shah, M.B.4
Goltsman, D.5
Dibartolo, G.6
-
14
-
-
34248374277
-
A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
-
Makarova, K.S., Grishin, N.V., Shabalina, S.A., Wolf, Y.I. Koonin, E.V. (2006) A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biology Direct 1 : 7.
-
(2006)
Biology Direct
, vol.1
, pp. 7
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
15
-
-
0029166294
-
Long stretches of short tandem repeats are present in the largest replicons of the archaea Haloferax-Mediterranei and Haloferax-Volcanii and could be involved in replicon partitioning
-
Mojica, F.J.M., Ferrer, C., Juez, G. Rodriguezvalera, F. (1995) Long stretches of short tandem repeats are present in the largest replicons of the archaea Haloferax-Mediterranei and Haloferax-Volcanii and could be involved in replicon partitioning. Mol Microbiol 17 : 85 93.
-
(1995)
Mol Microbiol
, vol.17
, pp. 85-93
-
-
Mojica, F.J.M.1
Ferrer, C.2
Juez, G.3
Rodriguezvalera, F.4
-
16
-
-
0034034401
-
Biological significance of a family of regularly spaced repeats in the genomes of Archaea, bacteria and mitochondria
-
Mojica, F.J.M., Diez-Villasenor, C., Soria, E. Juez, G. (2000) Biological significance of a family of regularly spaced repeats in the genomes of Archaea, bacteria and mitochondria. Mol Microbiol 36 : 244 246.
-
(2000)
Mol Microbiol
, vol.36
, pp. 244-246
-
-
Mojica, F.J.M.1
Diez-Villasenor, C.2
Soria, E.3
Juez, G.4
-
17
-
-
16444385662
-
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
-
Mojica, F.J.M., Diez-Villasenor, C., Garcia-Martinez, J. Soria, E. (2005) Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol 60 : 174 182.
-
(2005)
J Mol Evol
, vol.60
, pp. 174-182
-
-
Mojica, F.J.M.1
Diez-Villasenor, C.2
Garcia-Martinez, J.3
Soria, E.4
-
18
-
-
15844390228
-
CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
-
Pourcel, C., Salvignol, G. Vergnaud, G. (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology-Sgm 151 : 653 663.
-
(2005)
Microbiology-Sgm
, vol.151
, pp. 653-663
-
-
Pourcel, C.1
Salvignol, G.2
Vergnaud, G.3
-
19
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford, K., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M.A. Barrell, B. (2000) Artemis: sequence visualization and annotation. Bioinformatics 16 : 944 945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
20
-
-
0037236212
-
Comparative genotyping of Campylobacter jejuni by amplified fragment length polymorphism, multilocus sequence typing, and short repeat sequencing: Strain diversity, host range, and recombination
-
Schouls, L.M., Reulen, S., Duim, B., Wagenaar, J.A., Willems, R.J.L., Dingle, K.E., et al. (2003) Comparative genotyping of Campylobacter jejuni by amplified fragment length polymorphism, multilocus sequence typing, and short repeat sequencing: strain diversity, host range, and recombination. J Clin Microbiol 41 : 15 26.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 15-26
-
-
Schouls, L.M.1
Reulen, S.2
Duim, B.3
Wagenaar, J.A.4
Willems, R.J.L.5
Dingle, K.E.6
-
21
-
-
14244257476
-
Genotyping Mycobacterium ulcerans and Mycobacterium marinum by using mycobacterial interspersed repetitive units
-
Stragier, P., Ablordey, A., Meyers, W.M. Portaels, F. (2005) Genotyping Mycobacterium ulcerans and Mycobacterium marinum by using mycobacterial interspersed repetitive units. J Bacteriol 187 : 1639 1647.
-
(2005)
J Bacteriol
, vol.187
, pp. 1639-1647
-
-
Stragier, P.1
Ablordey, A.2
Meyers, W.M.3
Portaels, F.4
-
22
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson, G.W., Chapman, J., Hugenholtz, P., Allen, E.E., Ram, R.J., Richardson, P.M., et al. (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428 : 37 43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
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