-
1
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
10.1371/journal.pcbi.0010060, 1282333, 16292354
-
Haft DH, Selengut J, Mongodin EF, Nelson KE. A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 2005, 1(6):e60. 10.1371/journal.pcbi.0010060, 1282333, 16292354.
-
(2005)
PLoS Comput Biol
, vol.1
, Issue.6
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
2
-
-
34047118522
-
CRISPR provides acquired resistance against viruses in prokaryotes
-
10.1126/science.1138140, 17379808
-
Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, Romero DA, Horvath P. CRISPR provides acquired resistance against viruses in prokaryotes. Science 2007, 315(5819):1709-1712. 10.1126/science.1138140, 17379808.
-
(2007)
Science
, vol.315
, Issue.5819
, pp. 1709-1712
-
-
Barrangou, R.1
Fremaux, C.2
Deveau, H.3
Richards, M.4
Boyaval, P.5
Moineau, S.6
Romero, D.A.7
Horvath, P.8
-
3
-
-
34248374277
-
A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
-
10.1186/1745-6150-1-7, 1462988, 16545108
-
Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol Direct 2006, 1:7. 10.1186/1745-6150-1-7, 1462988, 16545108.
-
(2006)
Biol Direct
, vol.1
, pp. 7
-
-
Makarova, K.S.1
Grishin, N.V.2
Shabalina, S.A.3
Wolf, Y.I.4
Koonin, E.V.5
-
4
-
-
66349095372
-
Invasive DNA, chopped and in the CRISPR
-
10.1016/j.str.2009.05.002, 2711432, 19523896
-
Marraffini LA, Sontheimer EJ. Invasive DNA, chopped and in the CRISPR. Structure 2009, 17(6):786-788. 10.1016/j.str.2009.05.002, 2711432, 19523896.
-
(2009)
Structure
, vol.17
, Issue.6
, pp. 786-788
-
-
Marraffini, L.A.1
Sontheimer, E.J.2
-
5
-
-
0027724480
-
Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; application for strain differentiation by a novel typing method
-
10.1111/j.1365-2958.1993.tb00976.x, 7934856
-
Groenen PM, Bunschoten AE, van Soolingen D, van Embden JD. Nature of DNA polymorphism in the direct repeat cluster of Mycobacterium tuberculosis; application for strain differentiation by a novel typing method. Mol Microbiol 1993, 10(5):1057-1065. 10.1111/j.1365-2958.1993.tb00976.x, 7934856.
-
(1993)
Mol Microbiol
, vol.10
, Issue.5
, pp. 1057-1065
-
-
Groenen, P.M.1
Bunschoten, A.E.2
van Soolingen, D.3
van Embden, J.D.4
-
6
-
-
0028838407
-
Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia
-
228679, 8586708
-
van Soolingen D, Qian L, de Haas PE, Douglas JT, Traore H, Portaels F, Qing HZ, Enkhsaikan D, Nymadawa P, van Embden JD. Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia. J Clin Microbiol 1995, 33(12):3234-3238. 228679, 8586708.
-
(1995)
J Clin Microbiol
, vol.33
, Issue.12
, pp. 3234-3238
-
-
van Soolingen, D.1
Qian, L.2
de Haas, P.E.3
Douglas, J.T.4
Traore, H.5
Portaels, F.6
Qing, H.Z.7
Enkhsaikan, D.8
Nymadawa, P.9
van Embden, J.D.10
-
7
-
-
0030911908
-
Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology
-
229700, 9157152
-
Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, Kuijper S, Bunschoten A, Molhuizen H, Shaw R, Goyal M, et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 1997, 35(4):907-914. 229700, 9157152.
-
(1997)
J Clin Microbiol
, vol.35
, Issue.4
, pp. 907-914
-
-
Kamerbeek, J.1
Schouls, L.2
Kolk, A.3
van Agterveld, M.4
van Soolingen, D.5
Kuijper, S.6
Bunschoten, A.7
Molhuizen, H.8
Shaw, R.9
Goyal, M.10
-
8
-
-
33646227714
-
Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, Population Genetics, and Epidemiology
-
1468417, 16519816
-
Brudey K, Driscoll J, Rigouts L, Prodinger WM, Gori A, Al-Hajoj SAM, Allix C, Aristimuno L, Arora J, Baumanis V, et al. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, Population Genetics, and Epidemiology. BMC Microbiol 2006, 6(6):23. 1468417, 16519816.
-
(2006)
BMC Microbiol
, vol.6
, Issue.6
, pp. 23
-
-
Brudey, K.1
Driscoll, J.2
Rigouts, L.3
Prodinger, W.M.4
Gori, A.5
Al-Hajoj, S.A.M.6
Allix, C.7
Aristimuno, L.8
Arora, J.9
Baumanis, V.10
-
9
-
-
34547405296
-
Corynebacterium diphtheriae spoligotyping based on combined use of two CRISPR loci
-
10.1002/biot.200700035, 17431853
-
Mokrousov I, Limeschenko E, Vyazovaya A, Narvskaya O. Corynebacterium diphtheriae spoligotyping based on combined use of two CRISPR loci. Biotechnol J 2007, 2(7):901-906. 10.1002/biot.200700035, 17431853.
-
(2007)
Biotechnol J
, vol.2
, Issue.7
, pp. 901-906
-
-
Mokrousov, I.1
Limeschenko, E.2
Vyazovaya, A.3
Narvskaya, O.4
-
10
-
-
22144458370
-
Comparison between spoligotyping and IS6110 restriction fragment length polymorphisms in molecular genotyping analysis of Mycobacterium tuberculosis strains
-
10.1016/j.mcp.2005.01.001, 16038791
-
Gori A, Esposti A, Bandera A, Mezzetti M, Sola C, Marchetti G, Ferrario G, Salerno F, Goyal M, Diaz R, et al. Comparison between spoligotyping and IS6110 restriction fragment length polymorphisms in molecular genotyping analysis of Mycobacterium tuberculosis strains. Mol Cell Probes 2005, 19(4):236-244. 10.1016/j.mcp.2005.01.001, 16038791.
-
(2005)
Mol Cell Probes
, vol.19
, Issue.4
, pp. 236-244
-
-
Gori, A.1
Esposti, A.2
Bandera, A.3
Mezzetti, M.4
Sola, C.5
Marchetti, G.6
Ferrario, G.7
Salerno, F.8
Goyal, M.9
Diaz, R.10
-
11
-
-
33750085449
-
Proposal for Standardization of Optimized Mycobacterial Interspersed Repetitive Unit-Variable-Number Tandem Repeat Typing of Mycobacterium tuberculosis
-
10.1128/JCM.01392-06, 1698431, 17005759
-
Supply P, Allix C, Lesjean S, Cardoso-Oelemann M, Rusch-Gerdes S, Willery E, Savine E, de Haas P, van Deutekom H, Roring S, et al. Proposal for Standardization of Optimized Mycobacterial Interspersed Repetitive Unit-Variable-Number Tandem Repeat Typing of Mycobacterium tuberculosis. J Clin Microbiol 2006, 44(12):4498-4510. 10.1128/JCM.01392-06, 1698431, 17005759.
-
(2006)
J Clin Microbiol
, vol.44
, Issue.12
, pp. 4498-4510
-
-
Supply, P.1
Allix, C.2
Lesjean, S.3
Cardoso-Oelemann, M.4
Rusch-Gerdes, S.5
Willery, E.6
Savine, E.7
de Haas, P.8
van Deutekom, H.9
Roring, S.10
-
12
-
-
0032802792
-
Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility
-
85295, 10405410
-
Kremer K, van Soolingen D, Frothingham R, Haas WH, Hermans PW, Martin C, Palittapongarnpim P, Plikaytis BB, Riley LW, Yakrus MA, et al. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility. J Clin Microbiol 1999, 37(8):2607-2618. 85295, 10405410.
-
(1999)
J Clin Microbiol
, vol.37
, Issue.8
, pp. 2607-2618
-
-
Kremer, K.1
van Soolingen, D.2
Frothingham, R.3
Haas, W.H.4
Hermans, P.W.5
Martin, C.6
Palittapongarnpim, P.7
Plikaytis, B.B.8
Riley, L.W.9
Yakrus, M.A.10
-
13
-
-
0346462903
-
Transfer of a Mycobacterium tuberculosis genotyping method, Spoligotyping, from a reverse line-blot hybridization, membrane-based assay to the Luminex multianalyte profiling system
-
10.1128/JCM.42.1.474-477.2004, 321738, 14715809
-
Cowan LS, Diem L, Brake MC, Crawford JT. Transfer of a Mycobacterium tuberculosis genotyping method, Spoligotyping, from a reverse line-blot hybridization, membrane-based assay to the Luminex multianalyte profiling system. J Clin Microbiol 2004, 42(1):474-477. 10.1128/JCM.42.1.474-477.2004, 321738, 14715809.
-
(2004)
J Clin Microbiol
, vol.42
, Issue.1
, pp. 474-477
-
-
Cowan, L.S.1
Diem, L.2
Brake, M.C.3
Crawford, J.T.4
-
14
-
-
76649135130
-
Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay
-
Zhang J, Abadia E, Refregier G, Tafaj S, Boschiroli ML, Guillard B, Andremont A, Ruimy R, Sola C. Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay. J Med Microbiol 2009, 59:285-294.
-
(2009)
J Med Microbiol
, vol.59
, pp. 285-294
-
-
Zhang, J.1
Abadia, E.2
Refregier, G.3
Tafaj, S.4
Boschiroli, M.L.5
Guillard, B.6
Andremont, A.7
Ruimy, R.8
Sola, C.9
-
15
-
-
0037952768
-
Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study
-
10.1128/JCM.41.5.1963-1970.2003, 154710, 12734235
-
Filliol I, Driscoll JR, van Soolingen D, Kreiswirth BN, Kremer K, Valetudie G, Dang DA, Barlow R, Banerjee D, Bifani PJ, et al. Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study. J Clin Microbiol 2003, 41(5):1963-1970. 10.1128/JCM.41.5.1963-1970.2003, 154710, 12734235.
-
(2003)
J Clin Microbiol
, vol.41
, Issue.5
, pp. 1963-1970
-
-
Filliol, I.1
Driscoll, J.R.2
van Soolingen, D.3
Kreiswirth, B.N.4
Kremer, K.5
Valetudie, G.6
Dang, D.A.7
Barlow, R.8
Banerjee, D.9
Bifani, P.J.10
-
16
-
-
4544246531
-
Data mining of Mycobacterium tuberculosis complex genotyping results using mycobacterial interspersed repetitive units validates the clonal structure of spoligotyping-defined families
-
10.1016/j.resmic.2004.04.013, 15380552
-
Ferdinand S, Valetudie G, Sola C, Rastogi N. Data mining of Mycobacterium tuberculosis complex genotyping results using mycobacterial interspersed repetitive units validates the clonal structure of spoligotyping-defined families. Res Microbiol 2004, 155(8):647-654. 10.1016/j.resmic.2004.04.013, 15380552.
-
(2004)
Res Microbiol
, vol.155
, Issue.8
, pp. 647-654
-
-
Ferdinand, S.1
Valetudie, G.2
Sola, C.3
Rastogi, N.4
-
17
-
-
33750086013
-
Detecting emerging strains of tuberculosis by using spoligotypes
-
10.1073/pnas.0603130103, 1622811, 17015836
-
Tanaka MM, Francis AR. Detecting emerging strains of tuberculosis by using spoligotypes. Proceedings of the National Academy of Sciences of the United States of America 2006, 103(41):15266-15271. 10.1073/pnas.0603130103, 1622811, 17015836.
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.41
, pp. 15266-15271
-
-
Tanaka, M.M.1
Francis, A.R.2
-
18
-
-
0034000319
-
Genetic variation and evolutionary origin of the Direct repeat locus of Mycobacterium tuberculosis complex bacteria
-
10.1128/JB.182.9.2393-2401.2000, 111299, 10762237
-
van Embden JDA, van Gorkom T, Kremer K, Jansen R, van der Zeijst BAM, Schouls LM. Genetic variation and evolutionary origin of the Direct repeat locus of Mycobacterium tuberculosis complex bacteria. J Bacteriol 2000, 182:2393-2401. 10.1128/JB.182.9.2393-2401.2000, 111299, 10762237.
-
(2000)
J Bacteriol
, vol.182
, pp. 2393-2401
-
-
van Embden, J.D.A.1
van Gorkom, T.2
Kremer, K.3
Jansen, R.4
van der Zeijst, B.A.M.5
Schouls, L.M.6
-
19
-
-
69349104252
-
Supervised learning for the automated transcription of spacer classification from spoligotype films
-
10.1186/1471-2105-10-248, 2731757, 19674444
-
Jeffries DJ, Abernethy N, de Jong BC. Supervised learning for the automated transcription of spacer classification from spoligotype films. BMC Bioinformatics 2009, 10:248. 10.1186/1471-2105-10-248, 2731757, 19674444.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 248
-
-
Jeffries, D.J.1
Abernethy, N.2
de Jong, B.C.3
-
20
-
-
0036184742
-
A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis
-
10.1093/bioinformatics/18.2.235, 11847071
-
Sebban M, Mokrousov I, Rastogi N, Sola C. A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis. Bioinformatics 2002, 18(2):235-243. 10.1093/bioinformatics/18.2.235, 11847071.
-
(2002)
Bioinformatics
, vol.18
, Issue.2
, pp. 235-243
-
-
Sebban, M.1
Mokrousov, I.2
Rastogi, N.3
Sola, C.4
-
21
-
-
0036847747
-
Global distribution of Mycobacterium tuberculosis spoligotypes
-
Filliol I, Driscoll JR, Van Soolingen D, Kreiswirth BN, Kremer K, Valétudie G, Anh DD, Barlow R, Banerjee D, Bifani PJ, et al. Global distribution of Mycobacterium tuberculosis spoligotypes. Emerg Inf Dis 2002, 8(11):1347-1350.
-
(2002)
Emerg Inf Dis
, vol.8
, Issue.11
, pp. 1347-1350
-
-
Filliol, I.1
Driscoll, J.R.2
Van Soolingen, D.3
Kreiswirth, B.N.4
Kremer, K.5
Valétudie, G.6
Anh, D.D.7
Barlow, R.8
Banerjee, D.9
Bifani, P.J.10
|