-
1
-
-
33745594044
-
The gut flora as a forgotten organ
-
16819463
-
O'Hara AM, Shanahan F. The gut flora as a forgotten organ. EMBO Rep. 2006; 7(7):688-93. PMID: 16819463
-
(2006)
EMBO Rep.
, vol.7
, Issue.7
, pp. 688-693
-
-
O'Hara, A.M.1
Shanahan, F.2
-
2
-
-
77955647582
-
Gut microbiota in health and disease
-
20664075
-
Sekirov I, Russell SL, Antunes LCM, Finlay BB. Gut Microbiota in Health and Disease. Physiological Reviews. 2010; 90(3):859-904. doi: 10.1152/physrev.00045.2009 PMID: 20664075
-
(2010)
Physiological Reviews
, vol.90
, Issue.3
, pp. 859-904
-
-
Sekirov, I.1
Russell, S.L.2
Antunes, L.C.M.3
Finlay, B.B.4
-
3
-
-
33646198860
-
Pharmaco-metabonomic phenotyping and personalized drug treatment
-
16625200
-
Clayton TA, Lindon JC, Cloarec O, Antti H, Charuel C, Hanton G, et al. Pharmaco-metabonomic phenotyping and personalized drug treatment. Nature. 2006; 440(7087):1073-7. PMID: 16625200
-
(2006)
Nature.
, vol.440
, Issue.7087
, pp. 1073-1077
-
-
Clayton, T.A.1
Lindon, J.C.2
Cloarec, O.3
Antti, H.4
Charuel, C.5
Hanton, G.6
-
4
-
-
34248139693
-
Pharmacometabonomic phenotyping reveals different responses to xenobiotic intervention in rats
-
17311441
-
Li H, Ni Y, Su M, Qiu Y, Zhou M, Qiu M, et al. Pharmacometabonomic phenotyping reveals different responses to xenobiotic intervention in rats. J Proteome Res. 2007; 6(4):1364-70. PMID: 17311441
-
(2007)
J Proteome Res.
, vol.6
, Issue.4
, pp. 1364-1370
-
-
Li, H.1
Ni, Y.2
Su, M.3
Qiu, Y.4
Zhou, M.5
Qiu, M.6
-
5
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
19043404
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, et al. A core gut microbiome in obese and lean twins. Nature. 2009; 457(7228):480-4. doi: 10.1038/nature07540 PMID: 19043404
-
(2009)
Nature.
, vol.457
, Issue.7228
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
-
6
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
21885731
-
Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, et al. Linking long-term dietary patterns with gut microbial enterotypes. Science. 2011; 334(6052):105-8. doi: 10.1126/science.1208344 PMID: 21885731
-
(2011)
Science.
, vol.334
, Issue.6052
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.Y.5
Keilbaugh, S.A.6
-
7
-
-
28944442466
-
Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children
-
Stewart JA. Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children. Journal of Medical Microbiology. 2005; 54(12):1239-42.
-
(2005)
Journal of Medical Microbiology.
, vol.54
, Issue.12
, pp. 1239-1242
-
-
Stewart, J.A.1
-
8
-
-
0034814007
-
The host genotype affects the bacterial community in the human gastrointestinal tract
-
Zoetendal EG, Akkermans ADL, Vliet WMA-v, Visser JAGMd, De Vos WM. The Host Genotype Affects the Bacterial Community in the Human Gastrointestinal Tract. Microbial Ecology in Health and Disease. 2001:1-6.
-
(2001)
Microbial Ecology in Health and Disease
, pp. 1-6
-
-
Zoetendal, E.G.1
Akkermans, A.D.L.2
Vliet, W.M.A.-V.3
Visser, J.A.G.M.D.4
De Vos, W.M.5
-
9
-
-
84875370244
-
Microbiota conservation and BMI signatures in adult monozygotic twins
-
23190729
-
Tims S, Derom C, Jonkers DM, Vlietinck R, Saris WH, Kleerebezem M, et al. Microbiota conservation and BMI signatures in adult monozygotic twins. The ISME Journal. 2013; 7(4):707-17. doi: 10.1038/ismej.2012.146 PMID: 23190729
-
(2013)
The ISME Journal.
, vol.7
, Issue.4
, pp. 707-717
-
-
Tims, S.1
Derom, C.2
Jonkers, D.M.3
Vlietinck, R.4
Saris, W.H.5
Kleerebezem, M.6
-
10
-
-
84872687670
-
Inflammationassociated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice
-
23347395
-
Hildebrand F, Nguyen ATL, Brinkman B, Yunta RG, Cauwe B, Vandenabeele P, et al. Inflammationassociated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice. Genome Biol. 2013; 14(1):R4. doi: 10.1186/gb-2013-14-1-r4 PMID: 23347395
-
(2013)
Genome Biol.
, vol.14
, Issue.1
, pp. R4
-
-
Hildebrand, F.1
Nguyen, A.T.L.2
Brinkman, B.3
Yunta, R.G.4
Cauwe, B.5
Vandenabeele, P.6
-
11
-
-
79951514404
-
Genotype is a stronger determinant than sex of the mouse gut microbiota
-
21181142
-
Kovacs A, Ben-Jacob N, Tayem H, Halperin E, Iraqi FA, Gophna U. Genotype is a stronger determinant than sex of the mouse gut microbiota. Microb Ecol. 2011; 61(2):423-8. doi: 10.1007/s00248-010-9787-2 PMID: 21181142
-
(2011)
Microb Ecol.
, vol.61
, Issue.2
, pp. 423-428
-
-
Kovacs, A.1
Ben-Jacob, N.2
Tayem, H.3
Halperin, E.4
Iraqi, F.A.5
Gophna, U.6
-
12
-
-
77649138063
-
Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice
-
20052418
-
Friswell MK, Gika H, Stratford IJ, Theodoridis G, Telfer B, Wilson ID, et al. Site and Strain-Specific Variation in Gut Microbiota Profiles and Metabolism in Experimental Mice. PLoS ONE. 2010; 5(1):e8584. doi: 10.1371/journal.pone.0008584 PMID: 20052418
-
(2010)
PLoS ONE
, vol.5
, Issue.1
-
-
Friswell, M.K.1
Gika, H.2
Stratford, I.J.3
Theodoridis, G.4
Telfer, B.5
Wilson, I.D.6
-
13
-
-
38549104546
-
The Toll-like receptors TLR2 and TLR4 do not affect the intestinal microbiota composition in mice
-
18036181
-
Loh G, Brodziak F, Blaut M. The Toll-like receptors TLR2 and TLR4 do not affect the intestinal microbiota composition in mice. Environmental Microbiology. 2008; 10(3):709-15. PMID: 18036181
-
(2008)
Environmental Microbiology.
, vol.10
, Issue.3
, pp. 709-715
-
-
Loh, G.1
Brodziak, F.2
Blaut, M.3
-
14
-
-
80052808115
-
Predominant Effect of Host Genetics on Levels of Lactobacillus johnsonii Bacteria in the Mouse Gut
-
21803912
-
Buhnik-Rosenblau K, Danin-Poleg Y, Kashi Y. Predominant Effect of Host Genetics on Levels of Lactobacillus johnsonii Bacteria in the Mouse Gut. Appl Environ Microbiol. 2011; 77(18):6531-8. doi: 10.1128/AEM.00324-11 PMID: 21803912
-
(2011)
Appl Environ Microbiol.
, vol.77
, Issue.18
, pp. 6531-6538
-
-
Buhnik-Rosenblau, K.1
Danin-Poleg, Y.2
Kashi, Y.3
-
15
-
-
84867745001
-
-
22695862
-
Campbell JH, Foster CM, Vishnivetskaya T, Campbell AG, Yang ZK, Wymore A, et al. Host genetic and environmental effects on mouse intestinal microbiota. 2012; 6(11):2033-44. doi: 10.1038/ismej.2012. 54 PMID: 22695862
-
(2012)
Host Genetic and Environmental Effects on Mouse Intestinal Microbiota
, vol.6
, Issue.11
, pp. 2033-2044
-
-
Campbell, J.H.1
Foster, C.M.2
Vishnivetskaya, T.3
Campbell, A.G.4
Yang, Z.K.5
Wymore, A.6
-
16
-
-
78649428063
-
Variation in the gut microbiota of laboratory mice is related to both genetic and environmental factors
-
21262117
-
Hufeldt MR, Nielsen DS, Vogensen FK, Midtvedt T, Hansen AK. Variation in the gut microbiota of laboratory mice is related to both genetic and environmental factors. Comp Med. 2010; 60(5):336-47. PMID: 21262117
-
(2010)
Comp Med.
, vol.60
, Issue.5
, pp. 336-347
-
-
Hufeldt, M.R.1
Nielsen, D.S.2
Vogensen, F.K.3
Midtvedt, T.4
Hansen, A.K.5
-
17
-
-
84881115697
-
Effects of Age and Strain on the Microbiota Colonization in an Infant Human Flora-Associated Mouse Model
-
23604540
-
Zeng B, Li G, Yuan J, Li W, Tang H, Wei H. Effects of Age and Strain on the Microbiota Colonization in an Infant Human Flora-Associated Mouse Model. Curr Microbiol. 2013; 67(3):313-21. doi: 10.1007/s00284-013-0360-3 PMID: 23604540
-
(2013)
Curr Microbiol.
, vol.67
, Issue.3
, pp. 313-321
-
-
Zeng, B.1
Li, G.2
Yuan, J.3
Li, W.4
Tang, H.5
Wei, H.6
-
18
-
-
0035159614
-
Study of murine faecal microflora by cellular fatty acid analysis; Effect of age and mouse strain
-
11761365
-
Vaahtovuo J, Toivanen P, Eerola E. Study of murine faecal microflora by cellular fatty acid analysis; effect of age and mouse strain. Antonie Van Leeuwenhoek. 2001; 80(1):35-42. PMID: 11761365
-
(2001)
Antonie Van Leeuwenhoek.
, vol.80
, Issue.1
, pp. 35-42
-
-
Vaahtovuo, J.1
Toivanen, P.2
Eerola, E.3
-
19
-
-
25144508200
-
Comparison of cellular fatty acid profiles of the microbiota in different gut regions of BALB/c and C57BL/6J mice
-
15928978
-
Jussi V, Erkki E, Paavo T. Comparison of cellular fatty acid profiles of the microbiota in different gut regions of BALB/c and C57BL/6J mice. Antonie Van Leeuwenhoek. 2005; 88(1):67-74. PMID: 15928978
-
(2005)
Antonie Van Leeuwenhoek.
, vol.88
, Issue.1
, pp. 67-74
-
-
Jussi, V.1
Erkki, E.2
Paavo, T.3
-
20
-
-
33751074136
-
Quantitative PCR assays for mouse enteric flora reveal strain-dependent differences in composition that are influenced by the microenvironment
-
17091319
-
Alexander AD, Orcutt RP, Henry JC, Baker J, Bissahoyo AC, Threadgill DW. Quantitative PCR assays for mouse enteric flora reveal strain-dependent differences in composition that are influenced by the microenvironment. Mamm Genome. 2006; 17(11):1093-104. PMID: 17091319
-
(2006)
Mamm Genome.
, vol.17
, Issue.11
, pp. 1093-1104
-
-
Alexander, A.D.1
Orcutt, R.P.2
Henry, J.C.3
Baker, J.4
Bissahoyo, A.C.5
Threadgill, D.W.6
-
21
-
-
54549122338
-
Innate immunity and intestinal microbiota in the development of Type 1 diabetes
-
18806780
-
Wen L, Ley RE, Volchkov PY, Stranges PB, Avanesyan L, Stonebraker AC, et al. Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature. 2008; 455(7216):1109-13. doi: 10.1038/nature07336 PMID: 18806780
-
(2008)
Nature.
, vol.455
, Issue.7216
, pp. 1109-1113
-
-
Wen, L.1
Ley, R.E.2
Volchkov, P.Y.3
Stranges, P.B.4
Avanesyan, L.5
Stonebraker, A.C.6
-
22
-
-
78449296237
-
Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
-
20937875
-
Benson AK, Kelly SA, Legge R, Ma F, Low SJ, Kim J, et al. Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc Natl Acad Sci USA. 2010; 107(44):18933-8. doi: 10.1073/pnas.1007028107 PMID: 20937875
-
(2010)
Proc Natl Acad Sci USA.
, vol.107
, Issue.44
, pp. 18933-18938
-
-
Benson, A.K.1
Kelly, S.A.2
Legge, R.3
Ma, F.4
Low, S.J.5
Kim, J.6
-
23
-
-
23344442120
-
Obesity alters gut microbial ecology
-
16033867
-
Ley RE, Bäckhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI. Obesity alters gut microbial ecology. Proc Natl Acad Sci USA. 2005; 102(31):11070-5. PMID: 16033867
-
(2005)
Proc Natl Acad Sci USA.
, vol.102
, Issue.31
, pp. 11070-11075
-
-
Ley, R.E.1
Bäckhed, F.2
Turnbaugh, P.3
Lozupone, C.A.4
Knight, R.D.5
Gordon, J.I.6
-
24
-
-
45549083493
-
Assessing changes in composition of intestinal microbiota in neonatal BALB/c mice through cluster analysis of molecular markers
-
Fujiwara R, Watanabe J, Sonoyama K. Assessing changes in composition of intestinal microbiota in neonatal BALB/c mice through cluster analysis of molecular markers. BJN. 2008; 99(06):1-4.
-
(2008)
BJN
, vol.99
, Issue.6
, pp. 1-4
-
-
Fujiwara, R.1
Watanabe, J.2
Sonoyama, K.3
-
25
-
-
84996479950
-
Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice
-
25516416
-
Leamy LJ, Kelly SA, Nietfeldt J, Legge RM, Ma F, Hua K, et al. Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice. Genome Biology. 2014; 15(12):552. PMID: 25516416
-
(2014)
Genome Biology.
, vol.15
, Issue.12
, pp. 552
-
-
Leamy, L.J.1
Kelly, S.A.2
Nietfeldt, J.3
Legge, R.M.4
Ma, F.5
Hua, K.6
-
26
-
-
77958023670
-
Family relationship of female breeders reduce the systematic inter-individual variation in the gut microbiota of inbred laboratory mice
-
20713427
-
Hufeldt MR, Nielsen DS, Vogensen FK, Midtvedt T, Hansen AK. Family relationship of female breeders reduce the systematic inter-individual variation in the gut microbiota of inbred laboratory mice. Lab Anim. 2010; 44(4):283-9. doi: 10.1258/la.2010.010058 PMID: 20713427
-
(2010)
Lab Anim.
, vol.44
, Issue.4
, pp. 283-289
-
-
Hufeldt, M.R.1
Nielsen, D.S.2
Vogensen, F.K.3
Midtvedt, T.4
Hansen, A.K.5
-
27
-
-
84862491799
-
Murine gut microbiota is defined by host genetics and modulates variation of metabolic traits
-
22723961
-
Mcknite AM, Perez-Munoz ME, Lu L, Williams EG, Brewer S, Andreux PA, et al. Murine Gut Microbiota Is Defined by Host Genetics and Modulates Variation of Metabolic Traits. PLoS ONE. 2012; 7(6): e39191. doi: 10.1371/journal.pone.0039191 PMID: 22723961
-
(2012)
PLoS ONE
, vol.7
, Issue.6
-
-
Mcknite, A.M.1
Perez-Munoz, M.E.2
Lu, L.3
Williams, E.G.4
Brewer, S.5
Andreux, P.A.6
-
28
-
-
84862623932
-
Expression of the blood-grouprelated glycosyltransferase B4galnt2 influences the intestinal microbiota in mice
-
22278669
-
Staubach F, Künzel S, Baines AC, Yee A, Mcgee BM, Bäckhed F, et al. Expression of the blood-grouprelated glycosyltransferase B4galnt2 influences the intestinal microbiota in mice. The ISME Journal. 2012; 6(7):1345-55. doi: 10.1038/ismej.2011.204 PMID: 22278669
-
(2012)
The ISME Journal.
, vol.6
, Issue.7
, pp. 1345-1355
-
-
Staubach, F.1
Künzel, S.2
Baines, A.C.3
Yee, A.4
Mcgee, B.M.5
Bäckhed, F.6
-
29
-
-
79957576718
-
NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis
-
21565393
-
Elinav E, Strowig T, Kau AL, Henao-Mejia J, Thaiss CA, Booth CJ, et al. NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis. Cell. 2011; 145(5):745-57. doi: 10.1016/j.cell.2011. 04.022 PMID: 21565393
-
(2011)
Cell.
, vol.145
, Issue.5
, pp. 745-757
-
-
Elinav, E.1
Strowig, T.2
Kau, A.L.3
Henao-Mejia, J.4
Thaiss, C.A.5
Booth, C.J.6
-
30
-
-
84855845985
-
Host genetics and environmental factors regulate ecological succession of the mouse colon tissue-associated microbiota
-
22272321
-
Smith P, Siddharth J, Pearson R, Holway N, Shaxted M, Butler M, et al. Host Genetics and Environmental Factors Regulate Ecological Succession of the Mouse Colon Tissue-Associated Microbiota. PLoS ONE. 2012; 7(1):e30273. doi: 10.1371/journal.pone.0030273 PMID: 22272321
-
(2012)
PLoS ONE
, vol.7
, Issue.1
-
-
Smith, P.1
Siddharth, J.2
Pearson, R.3
Holway, N.4
Shaxted, M.5
Butler, M.6
-
31
-
-
0025411431
-
Comparison of the intestinal bacteria in specific pathogen free mice from different breeders
-
2141820
-
Hirayama K, Endo K, Kawamura S, Mitsuoka T. Comparison of the intestinal bacteria in specific pathogen free mice from different breeders. Jikken Dobutsu. 1990; 39(2):263-7. PMID: 2141820
-
(1990)
Jikken Dobutsu.
, vol.39
, Issue.2
, pp. 263-267
-
-
Hirayama, K.1
Endo, K.2
Kawamura, S.3
Mitsuoka, T.4
-
32
-
-
38649108480
-
Species variation in the fecal metabolome gives insight into differential gastrointestinal function
-
18052033
-
Saric J, Wang Y, Li J, Coen M, Utzinger J, Marchesi JR, et al. Species variation in the fecal metabolome gives insight into differential gastrointestinal function. Journal of proteome research. 2008; 7(1):352-60. PMID: 18052033
-
(2008)
Journal of Proteome Research.
, vol.7
, Issue.1
, pp. 352-360
-
-
Saric, J.1
Wang, Y.2
Li, J.3
Coen, M.4
Utzinger, J.5
Marchesi, J.R.6
-
33
-
-
0003034862
-
The development of the bacterial flora in the gastrointestinal tract of mice
-
14325473
-
Schaedler RW, Dubos R, Costello R. The development of the bacterial flora in the gastrointestinal tract of mice. J Exp Med. 1965; 122:59-66. PMID: 14325473
-
(1965)
J Exp Med.
, vol.122
, pp. 59-66
-
-
Schaedler, R.W.1
Dubos, R.2
Costello, R.3
-
34
-
-
78651189876
-
Association of germfree mice with bacteria isolated from normal mice
-
14325475
-
Schaedler RW, Dubos R, Costello R. Association of germfree mice with bacteria isolated from normal mice. J Exp Med. 1965; 122:77-82. PMID: 14325475
-
(1965)
J Exp Med.
, vol.122
, pp. 77-82
-
-
Schaedler, R.W.1
Dubos, R.2
Costello, R.3
-
35
-
-
0002274807
-
Development of an "altered Schaedler flora" for NCI gnotobiotic rodents
-
Orcutt R, Gianni F, Judge R. Development of an "altered Schaedler flora" for NCI gnotobiotic rodents. Microecol Ther 1987; 17(59).
-
(1987)
Microecol Ther
, vol.17
, Issue.59
-
-
Orcutt, R.1
Gianni, F.2
Judge, R.3
-
36
-
-
0032803862
-
Phylogeny of the defined murine microbiota: Altered Schaedler flora
-
10427008
-
Dewhirst FE, Chien CC, Paster BJ, Ericson RL, Orcutt RP, Schauer DB, et al. Phylogeny of the defined murine microbiota: altered Schaedler flora. Applied and Environmental Microbiology. 1999; 65 (8):3287-92. PMID: 10427008
-
(1999)
Applied and Environmental Microbiology.
, vol.65
, Issue.8
, pp. 3287-3292
-
-
Dewhirst, F.E.1
Chien, C.C.2
Paster, B.J.3
Ericson, R.L.4
Orcutt, R.P.5
Schauer, D.B.6
-
37
-
-
35348961403
-
An ecological and evolutionary perspective on human-microbe mutualism and disease
-
17943117
-
Dethlefsen L, Mcfall-Ngai M, Relman DA. An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature. 2007; 449(7164):811-8. PMID: 17943117
-
(2007)
Nature.
, vol.449
, Issue.7164
, pp. 811-818
-
-
Dethlefsen, L.1
Mcfall-Ngai, M.2
Relman, D.A.3
-
38
-
-
84863870217
-
Stabilization of the murine gut microbiome following weaning
-
22688727
-
Schloss PD, Schubert AM, Zackular JP, Iverson KD, Young VB, Petrosino JF. Stabilization of the murine gut microbiome following weaning. Gut microbes. 2012; 3(4):383-93. PMID: 22688727
-
(2012)
Gut Microbes.
, vol.3
, Issue.4
, pp. 383-393
-
-
Schloss, P.D.1
Schubert, A.M.2
Zackular, J.P.3
Iverson, K.D.4
Young, V.B.5
Petrosino, J.F.6
-
39
-
-
70350110294
-
High-fat diet determines the composition of the murine gut microbiome independently of obesity
-
19706296 e1-2
-
Hildebrandt MA, Hoffmann C, Sherrill-Mix SA, Keilbaugh SA, Hamady M, Chen Y-Y, et al. High-fat diet determines the composition of the murine gut microbiome independently of obesity. Gastroenterology. 2009; 137(5):1716-24.e1-2. doi: 10.1053/j.gastro.2009.08.042 PMID: 19706296
-
(2009)
Gastroenterology.
, vol.137
, Issue.5
, pp. 1716-1724
-
-
Hildebrandt, M.A.1
Hoffmann, C.2
Sherrill-Mix, S.A.3
Keilbaugh, S.A.4
Hamady, M.5
Chen, Y.-Y.6
-
40
-
-
76349111356
-
Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice
-
19865183
-
Zhang C, Zhang M, Wang S, Han R, Cao Y, Hua W, et al. Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice. The ISME Journal. 2009; 4 (2):232-41. doi: 10.1038/ismej.2009.112 PMID: 19865183
-
(2009)
The ISME Journal.
, vol.4
, Issue.2
, pp. 232-241
-
-
Zhang, C.1
Zhang, M.2
Wang, S.3
Han, R.4
Cao, Y.5
Hua, W.6
-
41
-
-
77950669604
-
The effect of diet on the human gut microbiome: A metagenomic analysis in humanized gnotobiotic mice
-
20368178
-
Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med. 2009; 1 (6):6ra14. doi: 10.1126/scitranslmed.3000322 PMID: 20368178
-
(2009)
Sci Transl Med.
, vol.1
, Issue.6
, pp. 6ra14
-
-
Turnbaugh, P.J.1
Ridaura, V.K.2
Faith, J.J.3
Rey, F.E.4
Knight, R.5
Gordon, J.I.6
-
42
-
-
41849127118
-
Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
-
18407065
-
Turnbaugh PJ, Bäckhed F, Fulton L, Gordon JI. Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe. 2008; 3(4):213-23. doi: 10.1016/j. chom.2008.02.015 PMID: 18407065
-
(2008)
Cell Host Microbe.
, vol.3
, Issue.4
, pp. 213-223
-
-
Turnbaugh, P.J.1
Bäckhed, F.2
Fulton, L.3
Gordon, J.I.4
-
43
-
-
84864508017
-
The effect of artificial rearing on gut microbiota in a mouse pupin- A-cup model
-
22850645
-
Zeng B, Yuan J, Li W, Tang H, Wei H. The effect of artificial rearing on gut microbiota in a mouse pupin-a-cup model. Exp Anim. 2012; 61(4):453-60. PMID: 22850645
-
(2012)
Exp Anim.
, vol.61
, Issue.4
, pp. 453-460
-
-
Zeng, B.1
Yuan, J.2
Li, W.3
Tang, H.4
Wei, H.5
-
44
-
-
84867746407
-
Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations
-
22495068
-
Zhang C, Zhang M, Pang X, Zhao Y, Wang L, Zhao L. Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations. The ISME Journal. 2012; 6(10):1848-57. doi: 10.1038/ismej. 2012.27 PMID: 22495068
-
(2012)
The ISME Journal.
, vol.6
, Issue.10
, pp. 1848-1857
-
-
Zhang, C.1
Zhang, M.2
Pang, X.3
Zhao, Y.4
Wang, L.5
Zhao, L.6
-
45
-
-
84894626268
-
Fungi of the murine gut: Episodic variation and proliferation during antibiotic treatment
-
23977147
-
Dollive S, Chen Y-Y, Grunberg S, Bittinger K, Hoffmann C, Vandivier L, et al. Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment. PLoS ONE. 2013; 8(8):e71806. doi: 10.1371/journal.pone.0071806 PMID: 23977147
-
(2013)
PLoS ONE.
, vol.8
, Issue.8
-
-
Dollive, S.1
Chen, Y.-Y.2
Grunberg, S.3
Bittinger, K.4
Hoffmann, C.5
Vandivier, L.6
-
46
-
-
0024098712
-
Differences in the gastrointestinal micro biota of specific pathogen free mice: An often unknown variable in biomedical research
-
2976437
-
O'rourke J, Lee A, Mcneill J. Differences in the gastrointestinal micro biota of specific pathogen free mice: an often unknown variable in biomedical research. Laboratory Animals. 1988; 22(4):297-303. PMID: 2976437
-
(1988)
Laboratory Animals.
, vol.22
, Issue.4
, pp. 297-303
-
-
O'Rourke, J.1
Lee, A.2
Mcneill, J.3
-
47
-
-
84903478262
-
Functional divergence in gastrointestinal microbiota in physically-separated genetically identical mice
-
24961643
-
Rogers GB, Kozlowska J, Keeble J, Metcalfe K, Fao M, Dowd SE, et al. Functional divergence in gastrointestinal microbiota in physically-separated genetically identical mice. Scientific Reports. 2014; 4:5437. doi: 10.1038/srep05437 PMID: 24961643
-
(2014)
Scientific Reports.
, vol.4
, pp. 5437
-
-
Rogers, G.B.1
Kozlowska, J.2
Keeble, J.3
Metcalfe, K.4
Fao, M.5
Dowd, S.E.6
-
48
-
-
44449137465
-
Long-term stability of the human gut microbiota in two different rat strains
-
18525103
-
Alpert C, Sczesny S, Gruhl B, Blaut M. Long-term stability of the human gut microbiota in two different rat strains. Curr Issues Mol Biol. 2008; 10(1-2):17-24. PMID: 18525103
-
(2008)
Curr Issues Mol Biol.
, vol.10
, Issue.1-2
, pp. 17-24
-
-
Alpert, C.1
Sczesny, S.2
Gruhl, B.3
Blaut, M.4
-
49
-
-
2442701970
-
Spatial distribution and stability of the eight microbial species of the altered schaedler flora in the mouse gastrointestinal tract
-
15128534
-
Sarma-Rupavtarm RB, Ge Z, Schauer DB, Fox JG, Polz MF. Spatial distribution and stability of the eight microbial species of the altered schaedler flora in the mouse gastrointestinal tract. Applied and Environmental Microbiology. 2004; 70(5):2791-800. PMID: 15128534
-
(2004)
Applied and Environmental Microbiology.
, vol.70
, Issue.5
, pp. 2791-2800
-
-
Sarma-Rupavtarm, R.B.1
Ge, Z.2
Schauer, D.B.3
Fox, J.G.4
Polz, M.F.5
-
50
-
-
77956418017
-
Community dynamics in the mouse gut microbiota: A possible role for IRF9-regulated genes in community homeostasis
-
20428250
-
Thompson CL, Hofer MJ, Campbell IL, Holmes AJ. Community dynamics in the mouse gut microbiota: a possible role for IRF9-regulated genes in community homeostasis. PLoS ONE. 2010; 5(4):e10335. doi: 10.1371/journal.pone.0010335 PMID: 20428250
-
(2010)
PLoS ONE.
, vol.5
, Issue.4
-
-
Thompson, C.L.1
Hofer, M.J.2
Campbell, I.L.3
Holmes, A.J.4
-
51
-
-
37749008130
-
Host Transmission of Salmonella enterica Serovar Typhimurium Is Controlled by Virulence Factors and Indigenous Intestinal Microbiota
-
17967858
-
Lawley TD, Bouley DM, Hoy YE, Gerke C, Relman DA, Monack DM. Host Transmission of Salmonella enterica Serovar Typhimurium Is Controlled by Virulence Factors and Indigenous Intestinal Microbiota. Infection and Immunity. 2008; 76(1):403-16. PMID: 17967858
-
(2008)
Infection and Immunity.
, vol.76
, Issue.1
, pp. 403-416
-
-
Lawley, T.D.1
Bouley, D.M.2
Hoy, Y.E.3
Gerke, C.4
Relman, D.A.5
Monack, D.M.6
-
52
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
19018661
-
Dethlefsen L, Huse S, Sogin ML, Relman DA. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. Plos Biol. 2008; 6(11):e280. doi: 10.1371/journal.pbio.0060280 PMID: 19018661
-
(2008)
Plos Biol.
, vol.6
, Issue.11
, pp. e280
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
53
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
20383131
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010; 7(5):335-6. doi: 10.1038/nmeth.f.303 PMID: 20383131
-
(2010)
Nat Methods.
, vol.7
, Issue.5
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
54
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
21700674
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics. 2011; 27(16):2194-200. doi: 10.1093/bioinformatics/btr381 PMID: 21700674
-
(2011)
Bioinformatics.
, vol.27
, Issue.16
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
55
-
-
84876427223
-
Phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data
-
23630581
-
Mcmurdie PJ, Holmes S. phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data. PLoS ONE. 2013; 8(4):e61217. doi: 10.1371/journal.pone.0061217 PMID: 23630581
-
(2013)
PLoS ONE
, vol.8
, Issue.4
-
-
Mcmurdie, P.J.1
Holmes, S.2
-
56
-
-
29144464937
-
UniFrac: A new phylogenetic method for comparing microbial communities
-
16332807
-
Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology. 2005; 71(12):8228-35. PMID: 16332807
-
(2005)
Applied and Environmental Microbiology.
, vol.71
, Issue.12
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
57
-
-
82855163972
-
Correlation network analysis applied to complex biofilm communities
-
22163302
-
Duran-Pinedo AE, Paster B, Teles R, Frias-Lopez J. Correlation network analysis applied to complex biofilm communities. PLoS ONE. 2011; 6(12):e28438. doi: 10.1371/journal.pone.0028438 PMID: 22163302
-
(2011)
PLoS ONE.
, vol.6
, Issue.12
-
-
Duran-Pinedo, A.E.1
Paster, B.2
Teles, R.3
Frias-Lopez, J.4
-
58
-
-
84880917983
-
A meta-analysis of changes in bacterial and archaeal communities with time
-
23575374
-
Shade A, Caporaso JG, Handelsman J, Knight R, Fierer N. A meta-analysis of changes in bacterial and archaeal communities with time. The ISME Journal. 2013; 7(8):1493-506. doi: 10.1038/ismej.2013.54 PMID: 23575374
-
(2013)
The ISME Journal.
, vol.7
, Issue.8
, pp. 1493-1506
-
-
Shade, A.1
Caporaso, J.G.2
Handelsman, J.3
Knight, R.4
Fierer, N.5
-
59
-
-
84956600958
-
Diet shapes the gut microbiome of pigs during nursing and weaning
-
26167280
-
Frese SA, Parker K, Calvert CC, Mills DA. Diet shapes the gut microbiome of pigs during nursing and weaning. Microbiome. 2015; 3:28. doi: 10.1186/s40168-015-0091-8 PMID: 26167280
-
(2015)
Microbiome.
, vol.3
, pp. 28
-
-
Frese, S.A.1
Parker, K.2
Calvert, C.C.3
Mills, D.A.4
-
60
-
-
0020052321
-
The microbial ecology of the large bowel of breast-fed and formula-fed infants during the first year of life
-
7143428
-
Stark PL, Lee A. The microbial ecology of the large bowel of breast-fed and formula-fed infants during the first year of life. Journal of Medical Microbiology. 1982; 15(2):189-203. PMID: 7143428
-
(1982)
Journal of Medical Microbiology.
, vol.15
, Issue.2
, pp. 189-203
-
-
Stark, P.L.1
Lee, A.2
-
61
-
-
84886723193
-
Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model
-
23823492
-
Mccafferty J, Mühlbauer M, Gharaibeh RZ, Arthur JC, Perez-Chanona E, Sha W, et al. Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model. The ISME Journal. 2013; 7(11):2116-25. doi: 10.1038/ismej.2013.106 PMID: 23823492
-
(2013)
The ISME Journal.
, vol.7
, Issue.11
, pp. 2116-2125
-
-
Mccafferty, J.1
Mühlbauer, M.2
Gharaibeh, R.Z.3
Arthur, J.C.4
Perez-Chanona, E.5
Sha, W.6
-
62
-
-
77649209317
-
Like will to like: Abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria
-
20062525
-
Stecher B, Chaffron S, Käppeli R, Hapfelmeier S, Freedrich S, Weber TC, et al. Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria. PLoS Pathog. 2010; 6(1):e1000711. doi: 10.1371/journal.ppat.1000711 PMID: 20062525
-
(2010)
PLoS Pathog.
, vol.6
, Issue.1
-
-
Stecher, B.1
Chaffron, S.2
Käppeli, R.3
Hapfelmeier, S.4
Freedrich, S.5
Weber, T.C.6
|