메뉴 건너뛰기




Volumn 10, Issue 11, 2015, Pages

Variation in taxonomic composition of the fecal microbiota in an inbred mouse strain across individuals and time

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; NUCLEOTIDE;

EID: 84959017985     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0142825     Document Type: Article
Times cited : (60)

References (62)
  • 1
    • 33745594044 scopus 로고    scopus 로고
    • The gut flora as a forgotten organ
    • 16819463
    • O'Hara AM, Shanahan F. The gut flora as a forgotten organ. EMBO Rep. 2006; 7(7):688-93. PMID: 16819463
    • (2006) EMBO Rep. , vol.7 , Issue.7 , pp. 688-693
    • O'Hara, A.M.1    Shanahan, F.2
  • 3
    • 33646198860 scopus 로고    scopus 로고
    • Pharmaco-metabonomic phenotyping and personalized drug treatment
    • 16625200
    • Clayton TA, Lindon JC, Cloarec O, Antti H, Charuel C, Hanton G, et al. Pharmaco-metabonomic phenotyping and personalized drug treatment. Nature. 2006; 440(7087):1073-7. PMID: 16625200
    • (2006) Nature. , vol.440 , Issue.7087 , pp. 1073-1077
    • Clayton, T.A.1    Lindon, J.C.2    Cloarec, O.3    Antti, H.4    Charuel, C.5    Hanton, G.6
  • 4
    • 34248139693 scopus 로고    scopus 로고
    • Pharmacometabonomic phenotyping reveals different responses to xenobiotic intervention in rats
    • 17311441
    • Li H, Ni Y, Su M, Qiu Y, Zhou M, Qiu M, et al. Pharmacometabonomic phenotyping reveals different responses to xenobiotic intervention in rats. J Proteome Res. 2007; 6(4):1364-70. PMID: 17311441
    • (2007) J Proteome Res. , vol.6 , Issue.4 , pp. 1364-1370
    • Li, H.1    Ni, Y.2    Su, M.3    Qiu, Y.4    Zhou, M.5    Qiu, M.6
  • 6
    • 80053618114 scopus 로고    scopus 로고
    • Linking long-term dietary patterns with gut microbial enterotypes
    • 21885731
    • Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, et al. Linking long-term dietary patterns with gut microbial enterotypes. Science. 2011; 334(6052):105-8. doi: 10.1126/science.1208344 PMID: 21885731
    • (2011) Science. , vol.334 , Issue.6052 , pp. 105-108
    • Wu, G.D.1    Chen, J.2    Hoffmann, C.3    Bittinger, K.4    Chen, Y.Y.5    Keilbaugh, S.A.6
  • 7
    • 28944442466 scopus 로고    scopus 로고
    • Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children
    • Stewart JA. Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children. Journal of Medical Microbiology. 2005; 54(12):1239-42.
    • (2005) Journal of Medical Microbiology. , vol.54 , Issue.12 , pp. 1239-1242
    • Stewart, J.A.1
  • 9
    • 84875370244 scopus 로고    scopus 로고
    • Microbiota conservation and BMI signatures in adult monozygotic twins
    • 23190729
    • Tims S, Derom C, Jonkers DM, Vlietinck R, Saris WH, Kleerebezem M, et al. Microbiota conservation and BMI signatures in adult monozygotic twins. The ISME Journal. 2013; 7(4):707-17. doi: 10.1038/ismej.2012.146 PMID: 23190729
    • (2013) The ISME Journal. , vol.7 , Issue.4 , pp. 707-717
    • Tims, S.1    Derom, C.2    Jonkers, D.M.3    Vlietinck, R.4    Saris, W.H.5    Kleerebezem, M.6
  • 10
    • 84872687670 scopus 로고    scopus 로고
    • Inflammationassociated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice
    • 23347395
    • Hildebrand F, Nguyen ATL, Brinkman B, Yunta RG, Cauwe B, Vandenabeele P, et al. Inflammationassociated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice. Genome Biol. 2013; 14(1):R4. doi: 10.1186/gb-2013-14-1-r4 PMID: 23347395
    • (2013) Genome Biol. , vol.14 , Issue.1 , pp. R4
    • Hildebrand, F.1    Nguyen, A.T.L.2    Brinkman, B.3    Yunta, R.G.4    Cauwe, B.5    Vandenabeele, P.6
  • 11
    • 79951514404 scopus 로고    scopus 로고
    • Genotype is a stronger determinant than sex of the mouse gut microbiota
    • 21181142
    • Kovacs A, Ben-Jacob N, Tayem H, Halperin E, Iraqi FA, Gophna U. Genotype is a stronger determinant than sex of the mouse gut microbiota. Microb Ecol. 2011; 61(2):423-8. doi: 10.1007/s00248-010-9787-2 PMID: 21181142
    • (2011) Microb Ecol. , vol.61 , Issue.2 , pp. 423-428
    • Kovacs, A.1    Ben-Jacob, N.2    Tayem, H.3    Halperin, E.4    Iraqi, F.A.5    Gophna, U.6
  • 12
    • 77649138063 scopus 로고    scopus 로고
    • Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice
    • 20052418
    • Friswell MK, Gika H, Stratford IJ, Theodoridis G, Telfer B, Wilson ID, et al. Site and Strain-Specific Variation in Gut Microbiota Profiles and Metabolism in Experimental Mice. PLoS ONE. 2010; 5(1):e8584. doi: 10.1371/journal.pone.0008584 PMID: 20052418
    • (2010) PLoS ONE , vol.5 , Issue.1
    • Friswell, M.K.1    Gika, H.2    Stratford, I.J.3    Theodoridis, G.4    Telfer, B.5    Wilson, I.D.6
  • 13
    • 38549104546 scopus 로고    scopus 로고
    • The Toll-like receptors TLR2 and TLR4 do not affect the intestinal microbiota composition in mice
    • 18036181
    • Loh G, Brodziak F, Blaut M. The Toll-like receptors TLR2 and TLR4 do not affect the intestinal microbiota composition in mice. Environmental Microbiology. 2008; 10(3):709-15. PMID: 18036181
    • (2008) Environmental Microbiology. , vol.10 , Issue.3 , pp. 709-715
    • Loh, G.1    Brodziak, F.2    Blaut, M.3
  • 14
    • 80052808115 scopus 로고    scopus 로고
    • Predominant Effect of Host Genetics on Levels of Lactobacillus johnsonii Bacteria in the Mouse Gut
    • 21803912
    • Buhnik-Rosenblau K, Danin-Poleg Y, Kashi Y. Predominant Effect of Host Genetics on Levels of Lactobacillus johnsonii Bacteria in the Mouse Gut. Appl Environ Microbiol. 2011; 77(18):6531-8. doi: 10.1128/AEM.00324-11 PMID: 21803912
    • (2011) Appl Environ Microbiol. , vol.77 , Issue.18 , pp. 6531-6538
    • Buhnik-Rosenblau, K.1    Danin-Poleg, Y.2    Kashi, Y.3
  • 16
    • 78649428063 scopus 로고    scopus 로고
    • Variation in the gut microbiota of laboratory mice is related to both genetic and environmental factors
    • 21262117
    • Hufeldt MR, Nielsen DS, Vogensen FK, Midtvedt T, Hansen AK. Variation in the gut microbiota of laboratory mice is related to both genetic and environmental factors. Comp Med. 2010; 60(5):336-47. PMID: 21262117
    • (2010) Comp Med. , vol.60 , Issue.5 , pp. 336-347
    • Hufeldt, M.R.1    Nielsen, D.S.2    Vogensen, F.K.3    Midtvedt, T.4    Hansen, A.K.5
  • 17
    • 84881115697 scopus 로고    scopus 로고
    • Effects of Age and Strain on the Microbiota Colonization in an Infant Human Flora-Associated Mouse Model
    • 23604540
    • Zeng B, Li G, Yuan J, Li W, Tang H, Wei H. Effects of Age and Strain on the Microbiota Colonization in an Infant Human Flora-Associated Mouse Model. Curr Microbiol. 2013; 67(3):313-21. doi: 10.1007/s00284-013-0360-3 PMID: 23604540
    • (2013) Curr Microbiol. , vol.67 , Issue.3 , pp. 313-321
    • Zeng, B.1    Li, G.2    Yuan, J.3    Li, W.4    Tang, H.5    Wei, H.6
  • 18
    • 0035159614 scopus 로고    scopus 로고
    • Study of murine faecal microflora by cellular fatty acid analysis; Effect of age and mouse strain
    • 11761365
    • Vaahtovuo J, Toivanen P, Eerola E. Study of murine faecal microflora by cellular fatty acid analysis; effect of age and mouse strain. Antonie Van Leeuwenhoek. 2001; 80(1):35-42. PMID: 11761365
    • (2001) Antonie Van Leeuwenhoek. , vol.80 , Issue.1 , pp. 35-42
    • Vaahtovuo, J.1    Toivanen, P.2    Eerola, E.3
  • 19
    • 25144508200 scopus 로고    scopus 로고
    • Comparison of cellular fatty acid profiles of the microbiota in different gut regions of BALB/c and C57BL/6J mice
    • 15928978
    • Jussi V, Erkki E, Paavo T. Comparison of cellular fatty acid profiles of the microbiota in different gut regions of BALB/c and C57BL/6J mice. Antonie Van Leeuwenhoek. 2005; 88(1):67-74. PMID: 15928978
    • (2005) Antonie Van Leeuwenhoek. , vol.88 , Issue.1 , pp. 67-74
    • Jussi, V.1    Erkki, E.2    Paavo, T.3
  • 20
    • 33751074136 scopus 로고    scopus 로고
    • Quantitative PCR assays for mouse enteric flora reveal strain-dependent differences in composition that are influenced by the microenvironment
    • 17091319
    • Alexander AD, Orcutt RP, Henry JC, Baker J, Bissahoyo AC, Threadgill DW. Quantitative PCR assays for mouse enteric flora reveal strain-dependent differences in composition that are influenced by the microenvironment. Mamm Genome. 2006; 17(11):1093-104. PMID: 17091319
    • (2006) Mamm Genome. , vol.17 , Issue.11 , pp. 1093-1104
    • Alexander, A.D.1    Orcutt, R.P.2    Henry, J.C.3    Baker, J.4    Bissahoyo, A.C.5    Threadgill, D.W.6
  • 21
    • 54549122338 scopus 로고    scopus 로고
    • Innate immunity and intestinal microbiota in the development of Type 1 diabetes
    • 18806780
    • Wen L, Ley RE, Volchkov PY, Stranges PB, Avanesyan L, Stonebraker AC, et al. Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature. 2008; 455(7216):1109-13. doi: 10.1038/nature07336 PMID: 18806780
    • (2008) Nature. , vol.455 , Issue.7216 , pp. 1109-1113
    • Wen, L.1    Ley, R.E.2    Volchkov, P.Y.3    Stranges, P.B.4    Avanesyan, L.5    Stonebraker, A.C.6
  • 22
    • 78449296237 scopus 로고    scopus 로고
    • Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
    • 20937875
    • Benson AK, Kelly SA, Legge R, Ma F, Low SJ, Kim J, et al. Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc Natl Acad Sci USA. 2010; 107(44):18933-8. doi: 10.1073/pnas.1007028107 PMID: 20937875
    • (2010) Proc Natl Acad Sci USA. , vol.107 , Issue.44 , pp. 18933-18938
    • Benson, A.K.1    Kelly, S.A.2    Legge, R.3    Ma, F.4    Low, S.J.5    Kim, J.6
  • 24
    • 45549083493 scopus 로고    scopus 로고
    • Assessing changes in composition of intestinal microbiota in neonatal BALB/c mice through cluster analysis of molecular markers
    • Fujiwara R, Watanabe J, Sonoyama K. Assessing changes in composition of intestinal microbiota in neonatal BALB/c mice through cluster analysis of molecular markers. BJN. 2008; 99(06):1-4.
    • (2008) BJN , vol.99 , Issue.6 , pp. 1-4
    • Fujiwara, R.1    Watanabe, J.2    Sonoyama, K.3
  • 25
    • 84996479950 scopus 로고    scopus 로고
    • Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice
    • 25516416
    • Leamy LJ, Kelly SA, Nietfeldt J, Legge RM, Ma F, Hua K, et al. Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice. Genome Biology. 2014; 15(12):552. PMID: 25516416
    • (2014) Genome Biology. , vol.15 , Issue.12 , pp. 552
    • Leamy, L.J.1    Kelly, S.A.2    Nietfeldt, J.3    Legge, R.M.4    Ma, F.5    Hua, K.6
  • 26
    • 77958023670 scopus 로고    scopus 로고
    • Family relationship of female breeders reduce the systematic inter-individual variation in the gut microbiota of inbred laboratory mice
    • 20713427
    • Hufeldt MR, Nielsen DS, Vogensen FK, Midtvedt T, Hansen AK. Family relationship of female breeders reduce the systematic inter-individual variation in the gut microbiota of inbred laboratory mice. Lab Anim. 2010; 44(4):283-9. doi: 10.1258/la.2010.010058 PMID: 20713427
    • (2010) Lab Anim. , vol.44 , Issue.4 , pp. 283-289
    • Hufeldt, M.R.1    Nielsen, D.S.2    Vogensen, F.K.3    Midtvedt, T.4    Hansen, A.K.5
  • 27
    • 84862491799 scopus 로고    scopus 로고
    • Murine gut microbiota is defined by host genetics and modulates variation of metabolic traits
    • 22723961
    • Mcknite AM, Perez-Munoz ME, Lu L, Williams EG, Brewer S, Andreux PA, et al. Murine Gut Microbiota Is Defined by Host Genetics and Modulates Variation of Metabolic Traits. PLoS ONE. 2012; 7(6): e39191. doi: 10.1371/journal.pone.0039191 PMID: 22723961
    • (2012) PLoS ONE , vol.7 , Issue.6
    • Mcknite, A.M.1    Perez-Munoz, M.E.2    Lu, L.3    Williams, E.G.4    Brewer, S.5    Andreux, P.A.6
  • 28
    • 84862623932 scopus 로고    scopus 로고
    • Expression of the blood-grouprelated glycosyltransferase B4galnt2 influences the intestinal microbiota in mice
    • 22278669
    • Staubach F, Künzel S, Baines AC, Yee A, Mcgee BM, Bäckhed F, et al. Expression of the blood-grouprelated glycosyltransferase B4galnt2 influences the intestinal microbiota in mice. The ISME Journal. 2012; 6(7):1345-55. doi: 10.1038/ismej.2011.204 PMID: 22278669
    • (2012) The ISME Journal. , vol.6 , Issue.7 , pp. 1345-1355
    • Staubach, F.1    Künzel, S.2    Baines, A.C.3    Yee, A.4    Mcgee, B.M.5    Bäckhed, F.6
  • 29
    • 79957576718 scopus 로고    scopus 로고
    • NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis
    • 21565393
    • Elinav E, Strowig T, Kau AL, Henao-Mejia J, Thaiss CA, Booth CJ, et al. NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis. Cell. 2011; 145(5):745-57. doi: 10.1016/j.cell.2011. 04.022 PMID: 21565393
    • (2011) Cell. , vol.145 , Issue.5 , pp. 745-757
    • Elinav, E.1    Strowig, T.2    Kau, A.L.3    Henao-Mejia, J.4    Thaiss, C.A.5    Booth, C.J.6
  • 30
    • 84855845985 scopus 로고    scopus 로고
    • Host genetics and environmental factors regulate ecological succession of the mouse colon tissue-associated microbiota
    • 22272321
    • Smith P, Siddharth J, Pearson R, Holway N, Shaxted M, Butler M, et al. Host Genetics and Environmental Factors Regulate Ecological Succession of the Mouse Colon Tissue-Associated Microbiota. PLoS ONE. 2012; 7(1):e30273. doi: 10.1371/journal.pone.0030273 PMID: 22272321
    • (2012) PLoS ONE , vol.7 , Issue.1
    • Smith, P.1    Siddharth, J.2    Pearson, R.3    Holway, N.4    Shaxted, M.5    Butler, M.6
  • 31
    • 0025411431 scopus 로고
    • Comparison of the intestinal bacteria in specific pathogen free mice from different breeders
    • 2141820
    • Hirayama K, Endo K, Kawamura S, Mitsuoka T. Comparison of the intestinal bacteria in specific pathogen free mice from different breeders. Jikken Dobutsu. 1990; 39(2):263-7. PMID: 2141820
    • (1990) Jikken Dobutsu. , vol.39 , Issue.2 , pp. 263-267
    • Hirayama, K.1    Endo, K.2    Kawamura, S.3    Mitsuoka, T.4
  • 32
    • 38649108480 scopus 로고    scopus 로고
    • Species variation in the fecal metabolome gives insight into differential gastrointestinal function
    • 18052033
    • Saric J, Wang Y, Li J, Coen M, Utzinger J, Marchesi JR, et al. Species variation in the fecal metabolome gives insight into differential gastrointestinal function. Journal of proteome research. 2008; 7(1):352-60. PMID: 18052033
    • (2008) Journal of Proteome Research. , vol.7 , Issue.1 , pp. 352-360
    • Saric, J.1    Wang, Y.2    Li, J.3    Coen, M.4    Utzinger, J.5    Marchesi, J.R.6
  • 33
    • 0003034862 scopus 로고
    • The development of the bacterial flora in the gastrointestinal tract of mice
    • 14325473
    • Schaedler RW, Dubos R, Costello R. The development of the bacterial flora in the gastrointestinal tract of mice. J Exp Med. 1965; 122:59-66. PMID: 14325473
    • (1965) J Exp Med. , vol.122 , pp. 59-66
    • Schaedler, R.W.1    Dubos, R.2    Costello, R.3
  • 34
    • 78651189876 scopus 로고
    • Association of germfree mice with bacteria isolated from normal mice
    • 14325475
    • Schaedler RW, Dubos R, Costello R. Association of germfree mice with bacteria isolated from normal mice. J Exp Med. 1965; 122:77-82. PMID: 14325475
    • (1965) J Exp Med. , vol.122 , pp. 77-82
    • Schaedler, R.W.1    Dubos, R.2    Costello, R.3
  • 35
    • 0002274807 scopus 로고
    • Development of an "altered Schaedler flora" for NCI gnotobiotic rodents
    • Orcutt R, Gianni F, Judge R. Development of an "altered Schaedler flora" for NCI gnotobiotic rodents. Microecol Ther 1987; 17(59).
    • (1987) Microecol Ther , vol.17 , Issue.59
    • Orcutt, R.1    Gianni, F.2    Judge, R.3
  • 37
    • 35348961403 scopus 로고    scopus 로고
    • An ecological and evolutionary perspective on human-microbe mutualism and disease
    • 17943117
    • Dethlefsen L, Mcfall-Ngai M, Relman DA. An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature. 2007; 449(7164):811-8. PMID: 17943117
    • (2007) Nature. , vol.449 , Issue.7164 , pp. 811-818
    • Dethlefsen, L.1    Mcfall-Ngai, M.2    Relman, D.A.3
  • 39
    • 70350110294 scopus 로고    scopus 로고
    • High-fat diet determines the composition of the murine gut microbiome independently of obesity
    • 19706296 e1-2
    • Hildebrandt MA, Hoffmann C, Sherrill-Mix SA, Keilbaugh SA, Hamady M, Chen Y-Y, et al. High-fat diet determines the composition of the murine gut microbiome independently of obesity. Gastroenterology. 2009; 137(5):1716-24.e1-2. doi: 10.1053/j.gastro.2009.08.042 PMID: 19706296
    • (2009) Gastroenterology. , vol.137 , Issue.5 , pp. 1716-1724
    • Hildebrandt, M.A.1    Hoffmann, C.2    Sherrill-Mix, S.A.3    Keilbaugh, S.A.4    Hamady, M.5    Chen, Y.-Y.6
  • 40
    • 76349111356 scopus 로고    scopus 로고
    • Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice
    • 19865183
    • Zhang C, Zhang M, Wang S, Han R, Cao Y, Hua W, et al. Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice. The ISME Journal. 2009; 4 (2):232-41. doi: 10.1038/ismej.2009.112 PMID: 19865183
    • (2009) The ISME Journal. , vol.4 , Issue.2 , pp. 232-241
    • Zhang, C.1    Zhang, M.2    Wang, S.3    Han, R.4    Cao, Y.5    Hua, W.6
  • 41
    • 77950669604 scopus 로고    scopus 로고
    • The effect of diet on the human gut microbiome: A metagenomic analysis in humanized gnotobiotic mice
    • 20368178
    • Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med. 2009; 1 (6):6ra14. doi: 10.1126/scitranslmed.3000322 PMID: 20368178
    • (2009) Sci Transl Med. , vol.1 , Issue.6 , pp. 6ra14
    • Turnbaugh, P.J.1    Ridaura, V.K.2    Faith, J.J.3    Rey, F.E.4    Knight, R.5    Gordon, J.I.6
  • 42
    • 41849127118 scopus 로고    scopus 로고
    • Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
    • 18407065
    • Turnbaugh PJ, Bäckhed F, Fulton L, Gordon JI. Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe. 2008; 3(4):213-23. doi: 10.1016/j. chom.2008.02.015 PMID: 18407065
    • (2008) Cell Host Microbe. , vol.3 , Issue.4 , pp. 213-223
    • Turnbaugh, P.J.1    Bäckhed, F.2    Fulton, L.3    Gordon, J.I.4
  • 43
    • 84864508017 scopus 로고    scopus 로고
    • The effect of artificial rearing on gut microbiota in a mouse pupin- A-cup model
    • 22850645
    • Zeng B, Yuan J, Li W, Tang H, Wei H. The effect of artificial rearing on gut microbiota in a mouse pupin-a-cup model. Exp Anim. 2012; 61(4):453-60. PMID: 22850645
    • (2012) Exp Anim. , vol.61 , Issue.4 , pp. 453-460
    • Zeng, B.1    Yuan, J.2    Li, W.3    Tang, H.4    Wei, H.5
  • 44
    • 84867746407 scopus 로고    scopus 로고
    • Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations
    • 22495068
    • Zhang C, Zhang M, Pang X, Zhao Y, Wang L, Zhao L. Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations. The ISME Journal. 2012; 6(10):1848-57. doi: 10.1038/ismej. 2012.27 PMID: 22495068
    • (2012) The ISME Journal. , vol.6 , Issue.10 , pp. 1848-1857
    • Zhang, C.1    Zhang, M.2    Pang, X.3    Zhao, Y.4    Wang, L.5    Zhao, L.6
  • 45
    • 84894626268 scopus 로고    scopus 로고
    • Fungi of the murine gut: Episodic variation and proliferation during antibiotic treatment
    • 23977147
    • Dollive S, Chen Y-Y, Grunberg S, Bittinger K, Hoffmann C, Vandivier L, et al. Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment. PLoS ONE. 2013; 8(8):e71806. doi: 10.1371/journal.pone.0071806 PMID: 23977147
    • (2013) PLoS ONE. , vol.8 , Issue.8
    • Dollive, S.1    Chen, Y.-Y.2    Grunberg, S.3    Bittinger, K.4    Hoffmann, C.5    Vandivier, L.6
  • 46
    • 0024098712 scopus 로고
    • Differences in the gastrointestinal micro biota of specific pathogen free mice: An often unknown variable in biomedical research
    • 2976437
    • O'rourke J, Lee A, Mcneill J. Differences in the gastrointestinal micro biota of specific pathogen free mice: an often unknown variable in biomedical research. Laboratory Animals. 1988; 22(4):297-303. PMID: 2976437
    • (1988) Laboratory Animals. , vol.22 , Issue.4 , pp. 297-303
    • O'Rourke, J.1    Lee, A.2    Mcneill, J.3
  • 47
    • 84903478262 scopus 로고    scopus 로고
    • Functional divergence in gastrointestinal microbiota in physically-separated genetically identical mice
    • 24961643
    • Rogers GB, Kozlowska J, Keeble J, Metcalfe K, Fao M, Dowd SE, et al. Functional divergence in gastrointestinal microbiota in physically-separated genetically identical mice. Scientific Reports. 2014; 4:5437. doi: 10.1038/srep05437 PMID: 24961643
    • (2014) Scientific Reports. , vol.4 , pp. 5437
    • Rogers, G.B.1    Kozlowska, J.2    Keeble, J.3    Metcalfe, K.4    Fao, M.5    Dowd, S.E.6
  • 48
    • 44449137465 scopus 로고    scopus 로고
    • Long-term stability of the human gut microbiota in two different rat strains
    • 18525103
    • Alpert C, Sczesny S, Gruhl B, Blaut M. Long-term stability of the human gut microbiota in two different rat strains. Curr Issues Mol Biol. 2008; 10(1-2):17-24. PMID: 18525103
    • (2008) Curr Issues Mol Biol. , vol.10 , Issue.1-2 , pp. 17-24
    • Alpert, C.1    Sczesny, S.2    Gruhl, B.3    Blaut, M.4
  • 49
    • 2442701970 scopus 로고    scopus 로고
    • Spatial distribution and stability of the eight microbial species of the altered schaedler flora in the mouse gastrointestinal tract
    • 15128534
    • Sarma-Rupavtarm RB, Ge Z, Schauer DB, Fox JG, Polz MF. Spatial distribution and stability of the eight microbial species of the altered schaedler flora in the mouse gastrointestinal tract. Applied and Environmental Microbiology. 2004; 70(5):2791-800. PMID: 15128534
    • (2004) Applied and Environmental Microbiology. , vol.70 , Issue.5 , pp. 2791-2800
    • Sarma-Rupavtarm, R.B.1    Ge, Z.2    Schauer, D.B.3    Fox, J.G.4    Polz, M.F.5
  • 50
    • 77956418017 scopus 로고    scopus 로고
    • Community dynamics in the mouse gut microbiota: A possible role for IRF9-regulated genes in community homeostasis
    • 20428250
    • Thompson CL, Hofer MJ, Campbell IL, Holmes AJ. Community dynamics in the mouse gut microbiota: a possible role for IRF9-regulated genes in community homeostasis. PLoS ONE. 2010; 5(4):e10335. doi: 10.1371/journal.pone.0010335 PMID: 20428250
    • (2010) PLoS ONE. , vol.5 , Issue.4
    • Thompson, C.L.1    Hofer, M.J.2    Campbell, I.L.3    Holmes, A.J.4
  • 51
    • 37749008130 scopus 로고    scopus 로고
    • Host Transmission of Salmonella enterica Serovar Typhimurium Is Controlled by Virulence Factors and Indigenous Intestinal Microbiota
    • 17967858
    • Lawley TD, Bouley DM, Hoy YE, Gerke C, Relman DA, Monack DM. Host Transmission of Salmonella enterica Serovar Typhimurium Is Controlled by Virulence Factors and Indigenous Intestinal Microbiota. Infection and Immunity. 2008; 76(1):403-16. PMID: 17967858
    • (2008) Infection and Immunity. , vol.76 , Issue.1 , pp. 403-416
    • Lawley, T.D.1    Bouley, D.M.2    Hoy, Y.E.3    Gerke, C.4    Relman, D.A.5    Monack, D.M.6
  • 52
    • 56849106496 scopus 로고    scopus 로고
    • The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
    • 19018661
    • Dethlefsen L, Huse S, Sogin ML, Relman DA. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. Plos Biol. 2008; 6(11):e280. doi: 10.1371/journal.pbio.0060280 PMID: 19018661
    • (2008) Plos Biol. , vol.6 , Issue.11 , pp. e280
    • Dethlefsen, L.1    Huse, S.2    Sogin, M.L.3    Relman, D.A.4
  • 54
    • 79961181125 scopus 로고    scopus 로고
    • UCHIME improves sensitivity and speed of chimera detection
    • 21700674
    • Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics. 2011; 27(16):2194-200. doi: 10.1093/bioinformatics/btr381 PMID: 21700674
    • (2011) Bioinformatics. , vol.27 , Issue.16 , pp. 2194-2200
    • Edgar, R.C.1    Haas, B.J.2    Clemente, J.C.3    Quince, C.4    Knight, R.5
  • 55
    • 84876427223 scopus 로고    scopus 로고
    • Phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data
    • 23630581
    • Mcmurdie PJ, Holmes S. phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data. PLoS ONE. 2013; 8(4):e61217. doi: 10.1371/journal.pone.0061217 PMID: 23630581
    • (2013) PLoS ONE , vol.8 , Issue.4
    • Mcmurdie, P.J.1    Holmes, S.2
  • 56
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • 16332807
    • Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology. 2005; 71(12):8228-35. PMID: 16332807
    • (2005) Applied and Environmental Microbiology. , vol.71 , Issue.12 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 57
    • 82855163972 scopus 로고    scopus 로고
    • Correlation network analysis applied to complex biofilm communities
    • 22163302
    • Duran-Pinedo AE, Paster B, Teles R, Frias-Lopez J. Correlation network analysis applied to complex biofilm communities. PLoS ONE. 2011; 6(12):e28438. doi: 10.1371/journal.pone.0028438 PMID: 22163302
    • (2011) PLoS ONE. , vol.6 , Issue.12
    • Duran-Pinedo, A.E.1    Paster, B.2    Teles, R.3    Frias-Lopez, J.4
  • 58
    • 84880917983 scopus 로고    scopus 로고
    • A meta-analysis of changes in bacterial and archaeal communities with time
    • 23575374
    • Shade A, Caporaso JG, Handelsman J, Knight R, Fierer N. A meta-analysis of changes in bacterial and archaeal communities with time. The ISME Journal. 2013; 7(8):1493-506. doi: 10.1038/ismej.2013.54 PMID: 23575374
    • (2013) The ISME Journal. , vol.7 , Issue.8 , pp. 1493-1506
    • Shade, A.1    Caporaso, J.G.2    Handelsman, J.3    Knight, R.4    Fierer, N.5
  • 59
    • 84956600958 scopus 로고    scopus 로고
    • Diet shapes the gut microbiome of pigs during nursing and weaning
    • 26167280
    • Frese SA, Parker K, Calvert CC, Mills DA. Diet shapes the gut microbiome of pigs during nursing and weaning. Microbiome. 2015; 3:28. doi: 10.1186/s40168-015-0091-8 PMID: 26167280
    • (2015) Microbiome. , vol.3 , pp. 28
    • Frese, S.A.1    Parker, K.2    Calvert, C.C.3    Mills, D.A.4
  • 60
    • 0020052321 scopus 로고
    • The microbial ecology of the large bowel of breast-fed and formula-fed infants during the first year of life
    • 7143428
    • Stark PL, Lee A. The microbial ecology of the large bowel of breast-fed and formula-fed infants during the first year of life. Journal of Medical Microbiology. 1982; 15(2):189-203. PMID: 7143428
    • (1982) Journal of Medical Microbiology. , vol.15 , Issue.2 , pp. 189-203
    • Stark, P.L.1    Lee, A.2
  • 61
    • 84886723193 scopus 로고    scopus 로고
    • Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model
    • 23823492
    • Mccafferty J, Mühlbauer M, Gharaibeh RZ, Arthur JC, Perez-Chanona E, Sha W, et al. Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model. The ISME Journal. 2013; 7(11):2116-25. doi: 10.1038/ismej.2013.106 PMID: 23823492
    • (2013) The ISME Journal. , vol.7 , Issue.11 , pp. 2116-2125
    • Mccafferty, J.1    Mühlbauer, M.2    Gharaibeh, R.Z.3    Arthur, J.C.4    Perez-Chanona, E.5    Sha, W.6
  • 62
    • 77649209317 scopus 로고    scopus 로고
    • Like will to like: Abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria
    • 20062525
    • Stecher B, Chaffron S, Käppeli R, Hapfelmeier S, Freedrich S, Weber TC, et al. Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria. PLoS Pathog. 2010; 6(1):e1000711. doi: 10.1371/journal.ppat.1000711 PMID: 20062525
    • (2010) PLoS Pathog. , vol.6 , Issue.1
    • Stecher, B.1    Chaffron, S.2    Käppeli, R.3    Hapfelmeier, S.4    Freedrich, S.5    Weber, T.C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.