-
1
-
-
84867192879
-
Intestinal inflammation targets cancer-inducing activity of the microbiota
-
Arthur JC, Perez-Chanona E, Muhlbauer M, Tomkovich S, Uronis JM, Fan TJ et al. (2012). Intestinal inflammation targets cancer-inducing activity of the microbiota. Science 338: 120-123.
-
(2012)
Science
, vol.338
, pp. 120-123
-
-
Arthur, J.C.1
Perez-Chanona, E.2
Muhlbauer, M.3
Tomkovich, S.4
Uronis, J.M.5
Fan, T.J.6
-
2
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR et al. (2011). Enterotypes of the human gut microbiome. Nature 473: 174-180.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
-
3
-
-
80054722148
-
Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes
-
Brown CT, Davis-Richardson AG, Giongo A, Gano KA, Crabb DB, Mukherjee N et al. (2011). Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes. PloS one 6: e25792.
-
(2011)
PloS One
, vol.6
-
-
Brown, C.T.1
Davis-Richardson, A.G.2
Giongo, A.3
Gano, K.A.4
Crabb, D.B.5
Mukherjee, N.6
-
4
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK et al. (2010). QIIME allows analysis of high-throughput community sequencing data. Nat methods 7: 335-336.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
5
-
-
84864722033
-
Gut microbiota composition correlates with diet and health in the elderly
-
Claesson MJ, Jeffery IB, Conde S, Power SE, O'Connor EM, Cusack S et al. (2012). Gut microbiota composition correlates with diet and health in the elderly. Nature 488: 178-184.
-
(2012)
Nature
, vol.488
, pp. 178-184
-
-
Claesson, M.J.1
Jeffery, I.B.2
Conde, S.3
Power, S.E.4
O'Connor, E.M.5
Cusack, S.6
-
6
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. (2011). UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
7
-
-
79957576718
-
NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis
-
Elinav E, Strowig T, Kau AL, Henao-Mejia J, Thaiss CA, Booth CJ et al. (2011). NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis. Cell 145: 745-757.
-
(2011)
Cell
, vol.145
, pp. 745-757
-
-
Elinav, E.1
Strowig, T.2
Kau, A.L.3
Henao-Mejia, J.4
Thaiss, C.A.5
Booth, C.J.6
-
8
-
-
34848889673
-
Communicable ulcerative colitis induced by T-bet deficiency in the innate immune system
-
Garrett WS, Lord GM, Punit S, Lugo-Villarino G, Mazmanian SK, Ito S et al. (2007). Communicable ulcerative colitis induced by T-bet deficiency in the innate immune system. Cell 131: 33-45.
-
(2007)
Cell
, vol.131
, pp. 33-45
-
-
Garrett, W.S.1
Lord, G.M.2
Punit, S.3
Lugo-Villarino, G.4
Mazmanian, S.K.5
Ito, S.6
-
9
-
-
84861139714
-
Ecological succession of bacterial communities during conventionalization of germ-free mice
-
Gillilland MG 3rd, Erb-Downward JR, Bassis CM, Shen MC, Toews GB, Young VB et al. (2012). Ecological succession of bacterial communities during conventionalization of germ-free mice. Appl Environ Microbiol 78: 2359-2366.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 2359-2366
-
-
Gillilland Iii., M.G.1
Erb-Downward, J.R.2
Bassis, C.M.3
Shen, M.C.4
Toews, G.B.5
Young, V.B.6
-
10
-
-
80052449884
-
Mu opioid signaling protects against acute murine intestinal injury in a manner involving Stat3 signaling
-
Goldsmith JR, Uronis JM, Jobin C. (2011). Mu opioid signaling protects against acute murine intestinal injury in a manner involving Stat3 signaling. Am J Pathol 179: 673-683.
-
(2011)
Am J Pathol
, vol.179
, pp. 673-683
-
-
Goldsmith, J.R.1
Uronis, J.M.2
Jobin, C.3
-
11
-
-
84872687670
-
Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice
-
Hildebrand F, Nguyen AT, Brinkman B, Yunta RG, Cauwe B, Vandenabeele P et al. (2013). Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice. Genome Biol 14: R4.
-
(2013)
Genome Biol
, vol.14
-
-
Hildebrand, F.1
Nguyen, A.T.2
Brinkman, B.3
Yunta, R.G.4
Cauwe, B.5
Vandenabeele, P.6
-
12
-
-
84862173705
-
A core human microbiome as viewed through 16S rRNA sequence clusters
-
Huse SM, Ye Y, Zhou Y, Fodor AA. (2012). A core human microbiome as viewed through 16S rRNA sequence clusters. PloS one 7: e34242.
-
(2012)
PloS One
, vol.7
-
-
Huse, S.M.1
Ye, Y.2
Zhou, Y.3
Fodor, A.A.4
-
14
-
-
23344442120
-
Obesity alters gut microbial ecology
-
Ley RE, Backhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI. (2005). Obesity alters gut microbial ecology. Proc Natl Acad Sci USA 102: 11070-11075.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 11070-11075
-
-
Ley, R.E.1
Backhed, F.2
Turnbaugh, P.3
Lozupone, C.A.4
Knight, R.D.5
Gordon, J.I.6
-
15
-
-
84861988364
-
Improved linear mixed models for genome-wide association studies
-
Listgarten J, Lippert C, Kadie CM, Davidson RI, Eskin E, Heckerman D. (2012). Improved linear mixed models for genome-wide association studies. Nat Methods 9: 525-526.
-
(2012)
Nat Methods
, vol.9
, pp. 525-526
-
-
Listgarten, J.1
Lippert, C.2
Kadie, C.M.3
Davidson, R.I.4
Eskin, E.5
Heckerman, D.6
-
16
-
-
84867648007
-
Routine habitat change: A source of unrecognized transient alteration of intestinal microbiota in laboratory mice
-
Ma BW, Bokulich NA, Castillo PA, Kananurak A, Underwood MA, Mills DA et al. (2012). Routine habitat change: a source of unrecognized transient alteration of intestinal microbiota in laboratory mice. PloS one 7: e47416.
-
(2012)
PloS One
, vol.7
-
-
Ma, B.W.1
Bokulich, N.A.2
Castillo, P.A.3
Kananurak, A.4
Underwood, M.A.5
Mills, D.A.6
-
17
-
-
44449106055
-
A microbial symbiosis factor prevents intestinal inflammatory disease
-
Mazmanian SK, Round JL, Kasper DL. (2008). A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453: 620-625.
-
(2008)
Nature
, vol.453
, pp. 620-625
-
-
Mazmanian, S.K.1
Round, J.L.2
Kasper, D.L.3
-
19
-
-
84863098466
-
High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing
-
Ross EM, Moate PJ, Bath CR, Davidson SE, Sawbridge TI, Guthridge KM et al. (2012). High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing. BMC Genet 13: 53.
-
(2012)
BMC Genet
, vol.13
, pp. 53
-
-
Ross, E.M.1
Moate, P.J.2
Bath, C.R.3
Davidson, S.E.4
Sawbridge, T.I.5
Guthridge, K.M.6
-
20
-
-
84858702125
-
Anti-inflammatory properties of dairy lactobacilli
-
Santos Rocha C, Lakhdari O, Blottiere HM, Blugeon S, Sokol H, Bermudez-Humaran LG et al. (2012). Anti-inflammatory properties of dairy lactobacilli. Inflamm Bowel Dis 18: 657-666.
-
(2012)
Inflamm Bowel Dis
, vol.18
, pp. 657-666
-
-
Santos Rocha, C.1
Lakhdari, O.2
Blottiere, H.M.3
Blugeon, S.4
Sokol, H.5
Bermudez-Humaran, L.G.6
-
21
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB et al. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
-
22
-
-
84864440400
-
Metagenomic microbial community profiling using unique clade-specific marker genes
-
Segata N, Waldron L, Ballarini A, Narasimhan V, Jousson O, Huttenhower C. (2012). Metagenomic microbial community profiling using unique clade-specific marker genes. Nat Methods 9: 811-814.
-
(2012)
Nat Methods
, vol.9
, pp. 811-814
-
-
Segata, N.1
Waldron, L.2
Ballarini, A.3
Narasimhan, V.4
Jousson, O.5
Huttenhower, C.6
-
23
-
-
4444242774
-
Antagonistic activities of lactobacilli and bifidobacteria against microbial pathogens
-
Servin AL. (2004). Antagonistic activities of lactobacilli and bifidobacteria against microbial pathogens. FEMS Microbiol Rev 28: 405-440.
-
(2004)
FEMS Microbiol Rev
, vol.28
, pp. 405-440
-
-
Servin, A.L.1
-
24
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article3
-
Smyth GK. (2004). Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
25
-
-
35348968286
-
The human microbiome project
-
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. (2007). The human microbiome project. Nature 449: 804-810.
-
(2007)
Nature
, vol.449
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
26
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. (2006). An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-1031.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
27
-
-
84866461477
-
Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice
-
Ubeda C, Lipuma L, Gobourne A, Viale A, Leiner I, Equinda M et al. (2012). Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice. J Exp Med 209: 1445-1456.
-
(2012)
J Exp Med
, vol.209
, pp. 1445-1456
-
-
Ubeda, C.1
Lipuma, L.2
Gobourne, A.3
Viale, A.4
Leiner, I.5
Equinda, M.6
-
28
-
-
84860485274
-
The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites
-
Ursell LK, Clemente JC, Rideout JR, Gevers D, Caporaso JG, Knight R. (2012). The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites. J Allergy Clin Immunol 129: 1204-1208.
-
(2012)
J Allergy Clin Immunol
, vol.129
, pp. 1204-1208
-
-
Ursell, L.K.1
Clemente, J.C.2
Rideout, J.R.3
Gevers, D.4
Caporaso, J.G.5
Knight, R.6
-
29
-
-
84871345504
-
The nature of confounding in genome-wide association studies
-
Vilhjalmsson BJ, Nordborg M. (2013). The nature of confounding in genome-wide association studies. Nat Rev Genet 14: 1-2.
-
(2013)
Nat Rev Genet
, vol.14
, pp. 1-2
-
-
Vilhjalmsson, B.J.1
Nordborg, M.2
-
30
-
-
84859963423
-
Lactocepin secreted by Lactobacillus exerts anti-inflammatory effects by selectively degrading proinflammatory chemokines
-
von Schillde MA, Hormannsperger G, Weiher M, Alpert CA, Hahne H, Bauerl C et al. (2012). Lactocepin secreted by Lactobacillus exerts anti-inflammatory effects by selectively degrading proinflammatory chemokines. Cell Host Microbe 11: 387-396.
-
(2012)
Cell Host Microbe
, vol.11
, pp. 387-396
-
-
Von Schillde, M.A.1
Hormannsperger, G.2
Weiher, M.3
Alpert, C.A.4
Hahne, H.5
Bauerl, C.6
-
31
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
|