Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations

ISME Journal

Volumn 6, Issue 10, 2012, Pages 1848-1857

  Zhang, Chenhong ^a   Zhang, Menghui ^a   Pang, Xiaoyan ^a   Zhao, Yufeng ^b   Wang, Linghua ^a   Zhao, Liping ^a,b  

^a Shanghai Jiao Tong University   (China)

^b BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

Author keywords

Dietary perturbations; Gut microbiota; Obesity; Resilience

Indexed keywords

ADULT; ECOSYSTEM RESILIENCE; FAT; FEEDING; MICROBIAL COMMUNITY; OBESITY; RODENT;

ANIMAL; ARTICLE; C57BL MOUSE; FECES; GASTROINTESTINAL TRACT; INSULIN RESISTANCE; LIPID DIET; MALE; METABOLISM; METAGENOME; MICROBIOLOGY; MOUSE; OBESITY; PHENOTYPE;

ANIMALS; DIET, HIGH-FAT; FECES; GASTROINTESTINAL TRACT; INSULIN RESISTANCE; MALE; METAGENOME; MICE; MICE, INBRED C57BL; OBESITY; PHENOTYPE;

MUS;

EID: 84867746407     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2012.27     Document Type: Article

References (46)

1. Akhaddar A, El Mostarchid B, Gazzaz M, Boucetta M. (2002). Cerebellar abscess due to lactococcus lactis. A new pathogen. Acta Neurochir 144: 305-306.
2. Beerens H, Romond C. (1977). Sulfate-reducing anaerobic bacteria in human feces. Am J Clin Nutr 30: 1770-1776.
3. Biagi E, Nylund L, Candela M, Ostan R, Bucci L, Pini E et al. (2010). Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians. PLoS One 5: e10667.
4. Cani PD, Bibiloni R, Knauf C, Waget A, Neyrinck AM, Delzenne NM et al. (2008). Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice. Diabetes 57: 1470-1481.
5. Cani PD, Neyrinck AM, Fava F, Knauf C, Burcelin RG, Tuohy KM et al. (2007). Selective increases of bifido-bacteria in gut microflora improve high-fat-diet-induced diabetes in mice through a mechanism associated with endotoxaemia. Diabetologia 50: 2374-2383.
6. Cani PD, Possemiers S, Van de Wiele T, Guiot Y, Everard A, Rottier O et al. (2009). Changes in gut microbiota control inflammation in obese mice through a mechanism involving GLP-2-driven improvement of gut permeability. Gut 58: 1091-1103.
7. De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S et al. (2010). Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci USA 107: 14691-14696.
8. De Santis TZ Jr., Hugenholtz P, Keller K, Brodie EL, Larsen N, Piceno YM etal. (2006). NAST: a multiple sequence alignment server for comparative analysis of 16S r RNA genes. Nucleic Acids Res 34: W394-W399.
9. Dethlefsen L, Relman DA. (2010). Microbes and Health Sackler Colloquium: Incomplete recovery and indivi-dualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci USA 108: 4554-4561.
10. Duncan SH, Lobley GE, Holtrop G, Ince J, Johnstone AM, Louis P et al. (2008). Human colonic microbiota associated with diet, obesity and weight loss. Int J Obes 32: 1720-1724.
11. Flint HJ, Duncan SH, Scott KP, Louis P. (2007). Interac-tions and competition within the microbial commu-nity of the human colon: links between diet and health. Environ Microbiol 9: 1101-1111.
12. Griffiths EA, Duffy LC, Schanbacher FL, Qiao H, Dryja D, Leavens A et al. (2004). In vivo effects of bifidobacteria and lactoferrin on gut endotoxin concentration and mucosal immunity in Balb/c mice. Dig Dis Sci 49: 579-589.
13. Guigoz Y, Dore J, Schiffrin EJ. (2008). The inflammatory status of old age can be nurtured from the intestinal environment. Curr Opin Clin Nutr Metab Care 11: 13-20.
14. Hopkins MJ, Macfarlane GT. (2002). Changes in predomi-nant bacterial populations in human faeces with age and with Clostridium difficile infection. J Med Micro-biol 51: 448-454.
15. Jia W, Li H, Zhao L, Nicholson JK. (2008). Gut microbiota: a potential new territory for drug targeting. Nat Rev 7: 123-129.
16. Kleessen B, Sykura B, Zunft HJ, Blaut M. (1997). Effects of inulin and lactose on fecal microflora, microbial activity, and bowel habit in elderly constipated persons. Am J Clin Nutr 65: 1397-1402.
17. Ley RE, Backhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI. (2005). Obesity alters gut microbial ecology. Proc Natl Acad Sci USA 102: 11070-11075.
18. Ley RE, Peterson DA, Gordon JI. (2006a). Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124: 837-848.
19. Ley RE, Turnbaugh PJ, Klein S, Gordon JI. (2006b). Microbial ecology: human gut microbes associated with obesity. Nature 444: 1022-1023.
20. Loubinoux J, Mory F, Pereira IA, Le Faou AE. (2000). Bacteremia caused by a strain of desulfovibrio related to the provisionally named desulfovibrio fairfielden-sis. J Clin Microbiol 38: 931-934.
21. Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar et al. (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
22. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA et al. (2005). Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
23. Mariat D, Firmesse O, Levenez F, Guimaraes V, Sokol H, Dore J et al. (2009). The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age. BMC Microbiol 9: 123.
24. Mc Kenna P, Hoffmann C, Minkah N, Aye PP, Lackner A, Liu Z et al. (2008). The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis. PLoS Pathog 4: e20.
25. Michalski CW, Di Mola FF, Kummel K, Wendt M, Koninger JS, Giese T et al. (2006). Human inflamma-tory bowel disease does not associate with Lawsonia intracellularis infection. BMCMicrobiol 6: 81.
26. Mitsuoka T. (1992). Intestinal flora and aging. Nutr Rev50: 438-446.
27. Mosca A, D'Alagni M, Del Prete R, De Michele GP, Summanen PH, Finegold SM et al. (1995). Preliminary evidence of endotoxic activity of Bilophila wads-worthia. Anaerobe 1: 21-24.
28. Mueller S, Saunier K, Hanisch C, Norin E, Alm L, Midtvedt T et al. (2006). Differences in fecal micro-biota in different European study populations in relation to age, gender, and country: a cross-sectional study. Appl Environ Microbiol 72: 1027-1033.
29. Murphy EF, Cotter PD, Healy S, Marques TM, O'Sullivan O, Fouhy F et al. (2010). Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models. Gut 59: 1635-1642.
30. Muyzer G, de Waal EC, Uitterlinden AG. (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S r RNA. Appl Environ Microbiol 59: 695-700.
31. Ostan R, Bucci L, Capri M, Salvioli S, Scurti M, Pini E et al. (2008). Immunosenescence and immunogenetics of human longevity. Neuroimmunomodulation 15: 224-240.
32. Popkin B. (2007). The World is Fat: The Fads, Trends, Policies, and Products That Are Fattening the Human Race. Avery: New York, USA.
33. Schloss PD, Handelsman J. (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
34. Schwiertz A, Taras D, Schafer K, Beijer S, Bos NA, Donus C et al. (2010). Microbiota and SCFA in lean and overweight healthy subjects. Obesity 18: 190-195.
35. Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR et al. (2006). Microbial diversity in the deep sea and the underexplored ''rare biosphere''. Proc Natl Acad Sci USA 103: 12115-12120.
36. Sonnenburg JL, Angenent LT, Gordon JI. (2004). Getting a grip on things: how do communities of bacterial symbionts become established in our intestine? Nat Immunol 5: 569-573.
37. Turnbaugh PJ, Backhed F, Fulton L, Gordon JI. (2008). Diet-induced obesity is linked to marked but rever-sible alterations in the mouse distal gut microbiome. Cell Host Microbe 3: 213-223.
38. Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE et al. (2009). A core gut microbiome in obese and lean twins. Nature 457: 480-484.
39. Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. (2006). An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-1031.
40. Walker AW, Ince J, Duncan SH, Webster LM, Holtrop G, Ze X et al. (2011). Dominant and diet-responsive groups of bacteria within the human colonic microbiota. ISMEJ5: 220-230.
41. Wang Z, Xiao G, Yao Y, Guo S, Lu K, Sheng Z. (2006). The role of bifidobacteria in gut barrier function after thermal injury in rats. J Trauma 61: 650-657.
42. Wang ZT, Yao YM, Xiao GX, Sheng ZY. (2004). Risk factors of development of gut-derived bacterial translocation in thermally injured rats. World J Gastroenterol 10: 1619-1624.
43. Weglarz L, Dzierzewicz Z, Skop B, Orchel A, Parfiniewicz B, Wisniowska B et al. (2003). Desulfovibrio desulfur-icans lipopolysaccharides induce endothelial cell IL-6 and IL-8 secretion and E-selectin and VCAM-1 expression. Cell Mol Biol Lett 8: 991-1003.
44. Woodmansey EJ, Mc Murdo ME, Macfarlane GT, Macfar-lane S. (2004). Comparison of compositions and metabolic activities of fecal microbiotas in young adults and in antibiotic-treated and non-antibiotic-treated elderly subjects. Appl Environ Microbiol 70: 6113-6122.
45. Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA et al. (2011). Linking long-term dietary patterns with gut microbial enterotypes. Science 334: 105-108.
46. Zhang C, Zhang M, Wang S, Han R, Cao Y, Hua W et al. (2010). Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice. ISMEJ4: 232-241.