-
1
-
-
67651203026
-
Changes in intestinal microflora in obesity: Cause or consequence?
-
Bäckhed, F. Changes in intestinal microflora in obesity: cause or consequence? J. Pediatr. Gastroenterol. Nutr. 48 Suppl 2, S56-7 (2009).
-
(2009)
J. Pediatr. Gastroenterol. Nutr.
, vol.48
, Issue.SUPPL. 2
-
-
Bäckhed, F.1
-
2
-
-
77950250064
-
Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5
-
Vijay-Kumar, M. et al. Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5. Science 328, 228-31 (2010).
-
(2010)
Science
, vol.328
, pp. 228-231
-
-
Vijay-Kumar, M.1
-
3
-
-
77956330642
-
Absence of microbiota (germ-free conditions) accelerates the atherosclerosis in ApoE-deficient mice fed standard low cholesterol diet
-
Stepankova, R. et al. Absence of microbiota (germ-free conditions) accelerates the atherosclerosis in ApoE-deficient mice fed standard low cholesterol diet. J. Atheroscler. Thromb. 17, 796-804 (2010).
-
(2010)
J. Atheroscler. Thromb.
, vol.17
, pp. 796-804
-
-
Stepankova, R.1
-
4
-
-
79952601424
-
Normal gut microbiota modulates brain development and behavior
-
Diaz Heijtz, R. et al. Normal gut microbiota modulates brain development and behavior. Proc. Natl. Acad. Sci. USA 108, 3047-52 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 3047-3052
-
-
Diaz Heijtz, R.1
-
5
-
-
48249125862
-
Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice
-
Cani, P. D. et al. Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice. Diabetes 57, 1470-81 (2008).
-
(2008)
Diabetes
, vol.57
, pp. 1470-1481
-
-
Cani, P.D.1
-
6
-
-
79956075540
-
Colonization-induced host-gut microbial metabolic interaction
-
DOI:10.1128/mBio.00271-10
-
Claus, S. P. et al. Colonization-induced host-gut microbial metabolic interaction. MBio 2, e00271-10; DOI:10.1128/mBio.00271-10 (2011).
-
(2011)
MBio
, vol.2
-
-
Claus, S.P.1
-
7
-
-
70349108406
-
Intestinal microbiota regulate xenobiotic metabolism in the liver
-
DOI:10.1371/journal.pone.0006958
-
Björkholm, B. et al. Intestinal microbiota regulate xenobiotic metabolism in the liver. PLoS One 4, e6958; DOI:10.1371/journal.pone.0006958 (2009).
-
(2009)
PLoS One
, vol.4
-
-
Björkholm, B.1
-
8
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
DOI 10.1073/pnas.0706625104
-
Frank, D. N. et al. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc. Natl. Acad. Sci. USA. 104, 13780-5 (2007). (Pubitemid 350003397)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.34
, pp. 13780-13785
-
-
Frank, D.N.1
St. Amand, A.L.2
Feldman, R.A.3
Boedeker, E.C.4
Harpaz, N.5
Pace, N.R.6
-
9
-
-
77953196709
-
ERK activation drives intestinal tumorigenesis in Apc(min/1) mice
-
Lee, S. H. et al. ERK activation drives intestinal tumorigenesis in Apc(min/1) mice. Nat. Med. 16, 665-70 (2010).
-
(2010)
Nat. Med.
, vol.16
, pp. 665-670
-
-
Lee, S.H.1
-
10
-
-
84903478837
-
A Novel Microbiota Stratification System Predicts Future xacerbations in Bronchiectasis
-
Epub ahead of print, DOI:10.1513/AnnalsATS.201310-335OC
-
Rogers, G. B. et al. A Novel Microbiota Stratification System Predicts Future xacerbations in Bronchiectasis. Ann. Am. Thorac. Soc. Epub ahead of print; DOI:10.1513/AnnalsATS.201310-335OC (2014).
-
(2014)
Ann. Am. Thorac. Soc
-
-
Rogers, G.B.1
-
11
-
-
49549107771
-
Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)
-
Dowd, S. E. et al. Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). BMC Microbiol. 8, 125 (2008).
-
(2008)
BMC Microbiol.
, vol.8
, pp. 125
-
-
Dowd, S.E.1
-
12
-
-
49949095159
-
Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) for microbiome studies: Bacterial diversity in the ileum of newly weaned Salmonella-infected pigs
-
Dowd, S. E., Sun, Y., Wolcott, R. D., Domingo, A. & Carroll, J. A. Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) for microbiome studies: bacterial diversity in the ileum of newly weaned Salmonella-infected pigs. Foodborne Pathog. Dis. 5, 459-72 (2008).
-
(2008)
Foodborne Pathog. Dis.
, vol.5
, pp. 459-472
-
-
Dowd, S.E.1
Sun, Y.2
Wolcott, R.D.3
Domingo, A.4
Carroll, J.A.5
-
13
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-1 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
14
-
-
80052851309
-
Diversity of the human skin microbiome early in life
-
Capone, K. A., Dowd, S. E., Stamatas, G. N. & Nikolovski, J. Diversity of the human skin microbiome early in life. J. Invest. Dermatol. 131, 2026-32 (2011).
-
(2011)
J. Invest. Dermatol.
, vol.131
, pp. 2026-2032
-
-
Capone, K.A.1
Dowd, S.E.2
Stamatas, G.N.3
Nikolovski, J.4
-
15
-
-
79951659098
-
Survey of fungi and yeast in polymicrobial infections in chronic wounds
-
Dowd, S. E. et al. Survey of fungi and yeast in polymicrobial infections in chronic wounds. J. Wound Care 20, 40-7 (2011).
-
(2011)
J. Wound Care
, vol.20
, pp. 40-47
-
-
Dowd, S.E.1
-
16
-
-
80055041479
-
Exploring the diversity of Gardnerella vaginalis in the genitourinary tract microbiotaofmonogamous couples through subtle nucleotide variation
-
DOI:10.1371/journal.pone.0026732
-
Eren, A. M. et al. Exploring the diversity of Gardnerella vaginalis in the genitourinary tract microbiotaofmonogamous couples through subtle nucleotide variation. PLoS One 6, e26732; DOI:10.1371/journal.pone.0026732 (2011).
-
(2011)
PLoS One
, vol.6
-
-
Eren, A.M.1
-
17
-
-
79953025661
-
Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice
-
Swanson, K. S. et al. Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice. ISME J. 5, 639-49 (2011).
-
(2011)
ISME J.
, vol.5
, pp. 639-649
-
-
Swanson, K.S.1
-
18
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis, T. Z. et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl. Environ. Microbiol. 72, 5069-72 (2006).
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5069-5072
-
-
Desantis, T.Z.1
-
19
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-6 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
20
-
-
84878270728
-
Robust estimation of microbial diversity in theory and in practice
-
Haegeman, B. et al. Robust estimation of microbial diversity in theory and in practice. ISME J. 7, 1092-101 (2013).
-
(2013)
ISME J.
, vol.7
, pp. 1092-1101
-
-
Haegeman, B.1
-
21
-
-
84860642778
-
NMR metabolomics of MTLn3E breast cancer cells identifies a role for CXCR4 in lipid and choline regulation
-
Vermeer, L. S., Fruhwirth, G. O., Pandya, P., Ng, T. & Mason, A. J. NMR metabolomics of MTLn3E breast cancer cells identifies a role for CXCR4 in lipid and choline regulation. J. Proteome Res. 11, 2996-3003 (2012).
-
(2012)
J. Proteome Res.
, vol.11
, pp. 2996-3003
-
-
Vermeer, L.S.1
Fruhwirth, G.O.2
Pandya, P.3
Ng, T.4
Mason, A.J.5
-
22
-
-
70350356261
-
A comparison of nine PLS1 algorithms
-
Andersson, M. A comparison of nine PLS1 algorithms. J. Chemometrics 23, 518-529 (2009).
-
(2009)
J. Chemometrics
, vol.23
, pp. 518-529
-
-
Andersson, M.1
-
23
-
-
84887989964
-
The impact of Pseudomonal growth on cystic fibrosis airway secretion composition in a metabolomic investigation
-
Kozlowska, J. et al. The impact of Pseudomonal growth on cystic fibrosis airway secretion composition in a metabolomic investigation. Metabolomics. 9, 1262-1273 (2013).
-
(2013)
Metabolomics.
, vol.9
, pp. 1262-1273
-
-
Kozlowska, J.1
-
24
-
-
33745728718
-
Probabilistic quotient normalization as robust method to account for dilution of complex biological mixtures. Application in 1H NMR metabonomics
-
Dieterle, F., Ross, A., Schlotterbeck, G. & Senn, H. Probabilistic quotient normalization as robust method to account for dilution of complex biological mixtures. Application in 1H NMR metabonomics. Anal. Chem. 78, 4281-90 (2006).
-
(2006)
Anal. Chem.
, vol.78
, pp. 4281-4290
-
-
Dieterle, F.1
Ross, A.2
Schlotterbeck, G.3
Senn, H.4
-
25
-
-
38549138986
-
BioMagResBank
-
DOI 10.1093/nar/gkm957
-
Ulrich, E. L. et al. BioMagResBank. Nucleic Acids Res. 36, D402-8 (2008). (Pubitemid 351149757)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Ulrich, E.L.1
Akutsu, H.2
Doreleijers, J.F.3
Harano, Y.4
Ioannidis, Y.E.5
Lin, J.6
Livny, M.7
Mading, S.8
Maziuk, D.9
Miller, Z.10
Nakatani, E.11
Schulte, C.F.12
Tolmie, D.E.13
Kent Wenger, R.14
Yao, H.15
Markley, J.L.16
-
26
-
-
75649113424
-
Computational approaches to metabolomics
-
Wishart, D. S. Computational approaches to metabolomics. Methods Mol. Biol. 593, 283-313 (2010).
-
(2010)
Methods Mol. Biol.
, vol.593
, pp. 283-313
-
-
Wishart, D.S.1
-
27
-
-
75649113424
-
Computational approaches to metabolomics
-
Wishart, D. S. Computational approaches to metabolomics. Methods Mol. Biol. 593, 283-313. (2010).
-
(2010)
Methods Mol. Biol.
, vol.593
, pp. 283-283
-
-
Wishart, D.S.1
-
28
-
-
84875366034
-
The role of biogeography in shaping diversity of the intestinal microbiota in house mice
-
Linnenbrink, M. et al. The role of biogeography in shaping diversity of the intestinal microbiota in house mice. Mol. Ecol. 22, 1904-16 (2013).
-
(2013)
Mol. Ecol.
, vol.22
, pp. 1904-1916
-
-
Linnenbrink, M.1
-
29
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu, G. D. et al. Linking long-term dietary patterns with gut microbial enterotypes. Science 334, 105-8 (2011).
-
(2011)
Science
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
-
30
-
-
78149272756
-
Prebiotic effects: Metabolic and health benefits
-
Roberfroid, M. et al. Prebiotic effects: metabolic and health benefits. Br. J. Nutr. 104 Suppl 2, S1-63 (2010).
-
(2010)
Br. J. Nutr.
, vol.104
, Issue.SUPPL. 2
-
-
Roberfroid, M.1
-
31
-
-
79960501919
-
Interaction between obesity and the gut microbiota: Relevance in nutrition
-
Delzenne, N. M. & Cani, P. D. Interaction between obesity and the gut microbiota: relevance in nutrition. Annu. Rev. Nutr. 31, 15-31 (2011).
-
(2011)
Annu. Rev. Nutr.
, vol.31
, pp. 15-31
-
-
Delzenne, N.M.1
Cani, P.D.2
-
32
-
-
0036871316
-
Relationship of prebiotics and food to intestinal microflora
-
Blaut, M. Relationship of prebiotics and food to intestinal microflora. Eur. J. Nutr. 41 Suppl 1, I11-6 (2002).
-
(2002)
Eur. J. Nutr.
, vol.41
, Issue.SUPPL. 1
-
-
Blaut, M.1
-
33
-
-
68249110221
-
The role of pH in determining the species composition of the human colonic microbiota
-
Duncan, S. H., Louis, P., Thomson, J. M. & Flint, H. J. The role of pH in determining the species composition of the human colonic microbiota. Environ. Microbiol. 11, 2112-22 (2009).
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 2112-2122
-
-
Duncan, S.H.1
Louis, P.2
Thomson, J.M.3
Flint, H.J.4
-
34
-
-
70350666634
-
Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43
-
Maslowski, K. M. et al. Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43. Nature 461, 1282-6 (2009).
-
(2009)
Nature
, vol.461
, pp. 1282-1286
-
-
Maslowski, K.M.1
-
35
-
-
0742305675
-
Short-chain fatty acids stimulate leptin production in adipocytes through the G protein-coupled receptor GPR41
-
Xiong, Y. et al. Short-chain fatty acids stimulate leptin production in adipocytes through the G protein-coupled receptor GPR41. Proc. Natl. Acad. Sci. USA. 101, 1045-50. (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA.
, vol.101
, pp. 1045-1045
-
-
Xiong, Y.1
-
36
-
-
0027485599
-
Sodium butyrate induces apoptosis in human colonic tumour cell lines in a p53-independent pathway: Implications for the possible role of dietary fibre in the prevention of large-bowel cancer
-
DOI 10.1002/ijc.2910550329
-
Hague, A. et al. Sodium butyrate induces apoptosis in human colonic tumour cell lines in a p53-independent pathway: implications for the possible role of dietary fibre in the prevention of large-bowel cancer. Int. J. Cancer 55, 498-505 (1993). (Pubitemid 23300605)
-
(1993)
International Journal of Cancer
, vol.55
, Issue.3
, pp. 498-505
-
-
Hague, A.1
Manning, A.M.2
Hanlon, K.A.3
Huschtscha, L.I.4
Hart, D.5
Paraskeva, C.6
-
37
-
-
84860386341
-
Double-check: Validation of diagnostic statistics for PLS-DA models in metabolomics studies
-
Szymanska, E., Saccenti, E., Smilde, A. K. & Westerhuis, J. A. Double-check: validation of diagnostic statistics for PLS-DA models in metabolomics studies. Metabolomics 8, S3-S16 (2012).
-
(2012)
Metabolomics
, vol.8
-
-
Szymanska, E.1
Saccenti, E.2
Smilde, A.K.3
Westerhuis, J.A.4
-
38
-
-
38949180527
-
Assessment of PLSDA cross validation
-
DOI 10.1007/s11306-007-0099-6
-
Westerhuis, J. A. et al. Assessment of PLSDA cross validation. Metabolomics 4, 81-9 (2008). (Pubitemid 351217591)
-
(2008)
Metabolomics
, vol.4
, Issue.1
, pp. 81-89
-
-
Westerhuis, J.A.1
Hoefsloot, H.C.J.2
Smit, S.3
Vis, D.J.4
Smilde, A.K.5
Velzen, E.J.J.6
Duijnhoven, J.P.M.7
Dorsten, F.A.8
-
39
-
-
84871633923
-
The colonic microbiota in health and disease
-
Shanahan, F. The colonic microbiota in health and disease. Curr. Opin. Gastroenterol. 29, 49-54 (2013).
-
(2013)
Curr. Opin. Gastroenterol.
, vol.29
, pp. 49-54
-
-
Shanahan, F.1
|