-
2
-
-
84857191660
-
Transcription as a source of genome instability
-
Kim N, Jinks-Robertson S (2012) Transcription as a source of genome instability. Nat Rev Genet 13(3):204-214.
-
(2012)
Nat Rev Genet
, vol.13
, Issue.3
, pp. 204-214
-
-
Kim, N.1
Jinks-Robertson, S.2
-
3
-
-
84873320525
-
Mechanisms of programmed DNA lesions and genomic instability in the immune system
-
Alt FW, Zhang Y, Meng FL, Guo C, Schwer B (2013) Mechanisms of programmed DNA lesions and genomic instability in the immune system. Cell 152(3):417-429.
-
(2013)
Cell
, vol.152
, Issue.3
, pp. 417-429
-
-
Alt, F.W.1
Zhang, Y.2
Meng, F.L.3
Guo, C.4
Schwer, B.5
-
4
-
-
84958157371
-
Long neural genes harbor recurrent DNA break clusters in neural stem/ progenitor cells
-
Wei PC, et al. Long neural genes harbor recurrent DNA break clusters in neural stem/ progenitor cells. Cell, 10.1016/j.cell.2015.12.039.
-
Cell
-
-
Wei, P.C.1
-
5
-
-
33745255099
-
A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription
-
Ju BG, et al. (2006) A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription. Science 312(5781):1798-1802.
-
(2006)
Science
, vol.312
, Issue.5781
, pp. 1798-1802
-
-
Ju, B.G.1
-
6
-
-
71249101060
-
Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer
-
Lin C, et al. (2009) Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer. Cell 139(6):1069-1083.
-
(2009)
Cell
, vol.139
, Issue.6
, pp. 1069-1083
-
-
Lin, C.1
-
7
-
-
84931577486
-
Activity-induced DNA breaks govern the expression of neuronal early-response genes
-
Madabhushi R, et al. (2015) Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes. Cell 161(7):1592-1605.
-
(2015)
Cell
, vol.161
, Issue.7
, pp. 1592-1605
-
-
Madabhushi, R.1
-
8
-
-
57849109058
-
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
-
Core LJ, Waterfall JJ, Lis JT (2008) Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322(5909):1845-1848.
-
(2008)
Science
, vol.322
, Issue.5909
, pp. 1845-1848
-
-
Core, L.J.1
Waterfall, J.J.2
Lis, J.T.3
-
9
-
-
80053558376
-
Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells
-
Chiarle R, et al. (2011) Genome-wide translocation sequencing reveals mechanisms of chromosome breaks and rearrangements in B cells. Cell 147(1):107-119.
-
(2011)
Cell
, vol.147
, Issue.1
, pp. 107-119
-
-
Chiarle, R.1
-
10
-
-
77953229115
-
The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
-
Lieber MR (2010) The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu Rev Biochem 79:181-211.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 181-211
-
-
Lieber, M.R.1
-
11
-
-
84867386682
-
Classical and alternative end-joining pathways for repair of lymphocyte-specific and general DNA double-strand breaks
-
Boboila C, Alt FW, Schwer B (2012) Classical and alternative end-joining pathways for repair of lymphocyte-specific and general DNA double-strand breaks. Adv Immunol 116:1-49.
-
(2012)
Adv Immunol
, vol.116
, pp. 1-49
-
-
Boboila, C.1
Alt, F.W.2
Schwer, B.3
-
12
-
-
0032585526
-
Targeted disruption of the gene encoding DNA ligase IV leads to lethality in embryonic mice
-
Barnes DE, Stamp G, Rosewell I, Denzel A, Lindahl T (1998) Targeted disruption of the gene encoding DNA ligase IV leads to lethality in embryonic mice. Curr Biol 8(25): 1395-1398.
-
(1998)
Curr Biol
, vol.8
, Issue.25
, pp. 1395-1398
-
-
Barnes, D.E.1
Stamp, G.2
Rosewell, I.3
Denzel, A.4
Lindahl, T.5
-
13
-
-
0032417640
-
A critical role for DNA end-joining proteins in both lymphogenesis and neurogenesis
-
Gao Y, et al. (1998) A critical role for DNA end-joining proteins in both lymphogenesis and neurogenesis. Cell 95(7):891-902.
-
(1998)
Cell
, vol.95
, Issue.7
, pp. 891-902
-
-
Gao, Y.1
-
14
-
-
0033634973
-
DNA ligase IV deficiency in mice leads to defective neurogenesis and embryonic lethality via the p53 pathway
-
Frank KM, et al. (2000) DNA ligase IV deficiency in mice leads to defective neurogenesis and embryonic lethality via the p53 pathway. Mol Cell 5(6):993-1002.
-
(2000)
Mol Cell
, vol.5
, Issue.6
, pp. 993-1002
-
-
Frank, K.M.1
-
15
-
-
0034646304
-
Defective embryonic neurogenesis in Ku-deficient but not DNAdependent protein kinase catalytic subunit-deficient mice
-
Gu Y, et al. (2000) Defective embryonic neurogenesis in Ku-deficient but not DNAdependent protein kinase catalytic subunit-deficient mice. Proc Natl Acad Sci USA 97(6):2668-2673.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.6
, pp. 2668-2673
-
-
Gu, Y.1
-
16
-
-
84886867688
-
Maintaining genome stability in the nervous system
-
McKinnon PJ (2013) Maintaining genome stability in the nervous system. Nat Neurosci 16(11):1523-1529.
-
(2013)
Nat Neurosci
, vol.16
, Issue.11
, pp. 1523-1529
-
-
McKinnon, P.J.1
-
17
-
-
0034690249
-
Interplay of p53 and DNA-repair protein XRCC4 in tumorigenesis, genomic stability and development
-
Gao Y, et al. (2000) Interplay of p53 and DNA-repair protein XRCC4 in tumorigenesis, genomic stability and development. Nature 404(6780):897-900.
-
(2000)
Nature
, vol.404
, Issue.6780
, pp. 897-900
-
-
Gao, Y.1
-
18
-
-
77950955761
-
Origin of chromosomal translocations in lymphoid cancer
-
Nussenzweig A, Nussenzweig MC (2010) Origin of chromosomal translocations in lymphoid cancer. Cell 141(1):27-38.
-
(2010)
Cell
, vol.141
, Issue.1
, pp. 27-38
-
-
Nussenzweig, A.1
Nussenzweig, M.C.2
-
19
-
-
78651386197
-
ATM damage response and XLF repair factor are functionally redundant in joining DNA breaks
-
Zha S, et al. (2011) ATM damage response and XLF repair factor are functionally redundant in joining DNA breaks. Nature 469(7329):250-254.
-
(2011)
Nature
, vol.469
, Issue.7329
, pp. 250-254
-
-
Zha, S.1
-
20
-
-
84894279992
-
Functional overlaps between XLF and the ATMdependent DNA double strand break response
-
Kumar V, Alt FW, Oksenych V (2014) Functional overlaps between XLF and the ATMdependent DNA double strand break response. DNA Repair (Amst) 16:11-22.
-
(2014)
DNA Repair (Amst)
, vol.16
, pp. 11-22
-
-
Kumar, V.1
Alt, F.W.2
Oksenych, V.3
-
21
-
-
84856866360
-
ATM and the molecular pathogenesis of ataxia telangiectasia
-
McKinnon PJ (2012) ATM and the molecular pathogenesis of ataxia telangiectasia. Annu Rev Pathol 7:303-321.
-
(2012)
Annu Rev Pathol
, vol.7
, pp. 303-321
-
-
McKinnon, P.J.1
-
22
-
-
84875423827
-
The ATM protein kinase: Regulating the cellular response to genotoxic stress, and more
-
Shiloh Y, Ziv Y (2013) The ATM protein kinase: Regulating the cellular response to genotoxic stress, and more. Nat Rev Mol Cell Biol 14(4):197-210.
-
(2013)
Nat Rev Mol Cell Biol
, vol.14
, Issue.4
, pp. 197-210
-
-
Shiloh, Y.1
Ziv, Y.2
-
23
-
-
34447093903
-
ATM prevents the persistence and propagation of chromosome breaks in lymphocytes
-
Callén E, et al. (2007) ATM prevents the persistence and propagation of chromosome breaks in lymphocytes. Cell 130(1):63-75.
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 63-75
-
-
Callén, E.1
-
24
-
-
84904294782
-
Developmental propagation of V(D)J recombination-associated DNA breaks and translocations in mature B cells via dicentric chromosomes
-
Hu J, Tepsuporn S, Meyers RM, Gostissa M, Alt FW(2014) Developmental propagation of V(D)J recombination-associated DNA breaks and translocations in mature B cells via dicentric chromosomes. Proc Natl Acad Sci USA 111(28):10269-10274.
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.28
, pp. 10269-10274
-
-
Hu, J.1
Tepsuporn, S.2
Meyers, R.M.3
Gostissa, M.4
Alt, F.W.5
-
25
-
-
84964313459
-
Mechanisms that can promote peripheral B-cell lymphoma in ATM-deficient mice
-
Tepsuporn S, Hu J, Gostissa M, Alt FW (2014) Mechanisms that can promote peripheral B-cell lymphoma in ATM-deficient mice. Cancer Immunol Res 2(9):857-866.
-
(2014)
Cancer Immunol Res
, vol.2
, Issue.9
, pp. 857-866
-
-
Tepsuporn, S.1
Hu, J.2
Gostissa, M.3
Alt, F.W.4
-
26
-
-
84940942139
-
Orientation-specific joining of AID-initiated DNA breaks promotes antibody class switching
-
Dong J, et al. (2015) Orientation-specific joining of AID-initiated DNA breaks promotes antibody class switching. Nature 525(7567):134-139.
-
(2015)
Nature
, vol.525
, Issue.7567
, pp. 134-139
-
-
Dong, J.1
-
27
-
-
84923275611
-
Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases
-
Frock RL, et al. (2015) Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases. Nat Biotechnol 33(2):179-186.
-
(2015)
Nat Biotechnol
, vol.33
, Issue.2
, pp. 179-186
-
-
Frock, R.L.1
-
28
-
-
84946200292
-
Chromosomal loop domains direct the recombination of antigen receptor genes
-
Hu J, et al. (2015) Chromosomal Loop Domains Direct the Recombination of Antigen Receptor Genes. Cell 163(4):947-959.
-
(2015)
Cell
, vol.163
, Issue.4
, pp. 947-959
-
-
Hu, J.1
-
29
-
-
84862778059
-
Spatial organization of the mouse genome and its role in recurrent chromosomal translocations
-
Zhang Y, et al. (2012) Spatial organization of the mouse genome and its role in recurrent chromosomal translocations. Cell 148(5):908-921.
-
(2012)
Cell
, vol.148
, Issue.5
, pp. 908-921
-
-
Zhang, Y.1
-
30
-
-
79954562232
-
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
-
Min IM, et al. (2011) Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. Genes Dev 25(7):742-754.
-
(2011)
Genes Dev
, vol.25
, Issue.7
, pp. 742-754
-
-
Min, I.M.1
-
31
-
-
84919903836
-
Convergent transcription at intragenic super-enhancers targets AID-initiated genomic instability
-
Meng FL, et al. (2014) Convergent transcription at intragenic super-enhancers targets AID-initiated genomic instability. Cell 159(7):1538-1548.
-
(2014)
Cell
, vol.159
, Issue.7
, pp. 1538-1548
-
-
Meng, F.L.1
-
32
-
-
33751212444
-
A breaking strategy for topoisomerase IIbeta/PARP-1-dependent regulated transcription
-
Ju BG, Rosenfeld MG (2006) A breaking strategy for topoisomerase IIbeta/PARP-1-dependent regulated transcription. Cell Cycle 5(22):2557-2560.
-
(2006)
Cell Cycle
, vol.5
, Issue.22
, pp. 2557-2560
-
-
Ju, B.G.1
Rosenfeld, M.G.2
-
33
-
-
80053502216
-
Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes
-
Klein IA, et al. (2011) Translocation-capture sequencing reveals the extent and nature of chromosomal rearrangements in B lymphocytes. Cell 147(1):95-106.
-
(2011)
Cell
, vol.147
, Issue.1
, pp. 95-106
-
-
Klein, I.A.1
-
34
-
-
67649766870
-
Transcription factories: Gene expression in unions?
-
Sutherland H, Bickmore WA (2009) Transcription factories: Gene expression in unions? Nat Rev Genet 10(7):457-466.
-
(2009)
Nat Rev Genet
, vol.10
, Issue.7
, pp. 457-466
-
-
Sutherland, H.1
Bickmore, W.A.2
-
35
-
-
70849135782
-
Induced chromosomal proximity and gene fusions in prostate cancer
-
Mani RS, et al. (2009) Induced chromosomal proximity and gene fusions in prostate cancer. Science 326(5957):1230.
-
(2009)
Science
, vol.326
, Issue.5957
, pp. 1230
-
-
Mani, R.S.1
-
36
-
-
77950462986
-
Alternative end-joining is suppressed by the canonical NHEJ component Xrcc4-ligase IV during chromosomal translocation formation
-
Simsek D, Jasin M (2010) Alternative end-joining is suppressed by the canonical NHEJ component Xrcc4-ligase IV during chromosomal translocation formation. Nat Struct Mol Biol 17(4):410-416.
-
(2010)
Nat Struct Mol Biol
, vol.17
, Issue.4
, pp. 410-416
-
-
Simsek, D.1
Jasin, M.2
-
37
-
-
77955875047
-
The role of mechanistic factors in promoting chromosomal translocations found in lymphoid and other cancers
-
Zhang Y, et al. (2010) The role of mechanistic factors in promoting chromosomal translocations found in lymphoid and other cancers. Adv Immunol 106:93-133.
-
(2010)
Adv Immunol
, vol.106
, pp. 93-133
-
-
Zhang, Y.1
-
38
-
-
34250718676
-
Isolation and culture of adult neurons and neurospheres
-
Brewer GJ, Torricelli JR (2007) Isolation and culture of adult neurons and neurospheres. Nat Protoc 2(6):1490-1498.
-
(2007)
Nat Protoc
, vol.2
, Issue.6
, pp. 1490-1498
-
-
Brewer, G.J.1
Torricelli, J.R.2
-
39
-
-
84873729095
-
Multiplex genome engineering using CRISPR/Cas systems
-
Cong L, et al. (2013) Multiplex genome engineering using CRISPR/Cas systems. Science 339(6121):819-823.
-
(2013)
Science
, vol.339
, Issue.6121
, pp. 819-823
-
-
Cong, L.1
-
40
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9(4):357-359.
-
(2012)
Nat Methods
, vol.9
, Issue.4
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
41
-
-
77952567987
-
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
-
Heinz S, et al. (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38(4):576-589.
-
(2010)
Mol Cell
, vol.38
, Issue.4
, pp. 576-589
-
-
Heinz, S.1
-
42
-
-
84891767394
-
RefSeq: An update on mammalian reference sequences
-
Pruitt KD, et al. (2014) RefSeq: an update on mammalian reference sequences. Nucleic Acids Res 42:D756-D763.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D756-D763
-
-
Pruitt, K.D.1
-
43
-
-
84892511644
-
Large-scale gene function analysis with the PANTHER classification system
-
Mi H, Muruganujan A, Casagrande JT, Thomas PD (2013) Large-scale gene function analysis with the PANTHER classification system. Nat Protoc 8(8):1551-1566.
-
(2013)
Nat Protoc
, vol.8
, Issue.8
, pp. 1551-1566
-
-
Mi, H.1
Muruganujan, A.2
Casagrande, J.T.3
Thomas, P.D.4
-
44
-
-
84874969184
-
PANTHER in 2013: Modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
-
Mi H, Muruganujan A, Thomas PD (2013) PANTHER in 2013: Modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees. Nucleic Acids Res 41(Database issue):D377-D386.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.DATABASE ISSUE
, pp. D377-D386
-
-
Mi, H.1
Muruganujan, A.2
Thomas, P.D.3
|