-
1
-
-
84859257158
-
Exploring the complexity of the HIV-1 fitness landscape
-
Kouyos RD, Leventhal GE, Hinkley T, Haddad M, Whitcomb JM, Petropoulos CJ, et al. Exploring the complexity of the HIV-1 fitness landscape. PLoS Genet. 2012;8(3):e1002551. doi: 10.1371/journal.pgen.1002551 22412384
-
(2012)
PLoS Genet
, vol.8
, Issue.3
, pp. 1002551
-
-
Kouyos, R.D.1
Leventhal, G.E.2
Hinkley, T.3
Haddad, M.4
Whitcomb, J.M.5
Petropoulos, C.J.6
-
2
-
-
79955377821
-
High-throughput identification of genetic interactions in HIV-1
-
Weinreich DM, High-throughput identification of genetic interactions in HIV-1. Nat Genet. 2011 May;43(5):398–400. doi: 10.1038/ng.820 21522176
-
(2011)
Nat Genet
, vol.43
, Issue.5
, pp. 398-400
-
-
Weinreich, D.M.1
-
3
-
-
33645666942
-
Darwinian evolution can follow only very few mutational paths to fitter proteins
-
Weinreich DM, Delaney NF, Depristo MA, Hartl DL, Darwinian evolution can follow only very few mutational paths to fitter proteins. Science. 2006 Apr 7;312(5770):111–4. 16601193
-
(2006)
Science
, vol.312
, Issue.5770
, pp. 111-114
-
-
Weinreich, D.M.1
Delaney, N.F.2
Depristo, M.A.3
Hartl, D.L.4
-
4
-
-
84892970335
-
Epistasis between antibiotic resistance mutations drives the evolution of extensively drug-resistant tuberculosis
-
Borrell S, Teo Y, Giardina F, Streicher EM, Klopper M, Feldmann J, et al. Epistasis between antibiotic resistance mutations drives the evolution of extensively drug-resistant tuberculosis. Evol Med Public Health. 2013 Jan;2013(1):65–74. doi: 10.1093/emph/eot003 24481187
-
(2013)
Evol Med Public Health
, vol.2013
, Issue.1
, pp. 65-74
-
-
Borrell, S.1
Teo, Y.2
Giardina, F.3
Streicher, E.M.4
Klopper, M.5
Feldmann, J.6
-
5
-
-
77954476569
-
On the possible role of robustness in the evolution of infectious diseases
-
Ogbunugafor CB, Pease JB, Turner PE, On the possible role of robustness in the evolution of infectious diseases. Chaos Woodbury N. 2010 Jun;20(2):026108.
-
(2010)
Chaos Woodbury N
, vol.20
, Issue.2
, pp. 026108
-
-
Ogbunugafor, C.B.1
Pease, J.B.2
Turner, P.E.3
-
6
-
-
84874346133
-
Evolutionary rescue from extinction is contingent on a lower rate of environmental change
-
Lindsey HA, Gallie J, Taylor S, Kerr B, Evolutionary rescue from extinction is contingent on a lower rate of environmental change. Nature. 2013 Feb 28;494(7438):463–7. doi: 10.1038/nature11879 23395960
-
(2013)
Nature
, vol.494
, Issue.7438
, pp. 463-467
-
-
Lindsey, H.A.1
Gallie, J.2
Taylor, S.3
Kerr, B.4
-
7
-
-
84875546274
-
Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design
-
Ferguson AL, Mann JK, Omarjee S, Ndung’u T, Walker BD, Chakraborty AK, Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design. Immunity. 2013 Mar 21;38(3):606–17. doi: 10.1016/j.immuni.2012.11.022 23521886
-
(2013)
Immunity
, vol.38
, Issue.3
, pp. 606-617
-
-
Ferguson, A.L.1
Mann, J.K.2
Omarjee, S.3
Ndung’u, T.4
Walker, B.D.5
Chakraborty, A.K.6
-
8
-
-
84873901473
-
Designing Antibiotic Cycling Strategies by Determining and Understanding Local Adaptive Landscapes
-
Goulart CP, Mahmudi M, Crona KA, Jacobs SD, Kallmann M, Hall BG, et al. Designing Antibiotic Cycling Strategies by Determining and Understanding Local Adaptive Landscapes. PLoS ONE. 2013 Feb 13;8(2):e56040. doi: 10.1371/journal.pone.0056040 23418506
-
(2013)
PLoS ONE
, vol.8
, Issue.2
, pp. 56040
-
-
Goulart, C.P.1
Mahmudi, M.2
Crona, K.A.3
Jacobs, S.D.4
Kallmann, M.5
Hall, B.G.6
-
9
-
-
79952853435
-
Exploring the fitness landscape of an RNA virus by using a universal barcode microarray
-
Lauring AS, Andino R, Exploring the fitness landscape of an RNA virus by using a universal barcode microarray. J Virol. 2011 Apr;85(8):3780–91. doi: 10.1128/JVI.02217-10 21289109
-
(2011)
J Virol
, vol.85
, Issue.8
, pp. 3780-3791
-
-
Lauring, A.S.1
Andino, R.2
-
10
-
-
77952370937
-
The Selection Landscape of Malaria Parasites
-
Mackinnon MJ, Marsh K, The Selection Landscape of Malaria Parasites. Science. 2010 May 14;328(5980):866–71. doi: 10.1126/science.1185410 20466925
-
(2010)
Science
, vol.328
, Issue.5980
, pp. 866-871
-
-
Mackinnon, M.J.1
Marsh, K.2
-
11
-
-
78649365006
-
Compensatory mutations restore fitness during the evolution of dihydrofolate reductase
-
Brown KM, Costanzo MS, Xu W, Roy S, Lozovsky ER, Hartl DL, Compensatory mutations restore fitness during the evolution of dihydrofolate reductase. Mol Biol Evol. 2010 Dec;27(12):2682–90. doi: 10.1093/molbev/msq160 20576759
-
(2010)
Mol Biol Evol
, vol.27
, Issue.12
, pp. 2682-2690
-
-
Brown, K.M.1
Costanzo, M.S.2
Xu, W.3
Roy, S.4
Lozovsky, E.R.5
Hartl, D.L.6
-
12
-
-
79956356758
-
Fitness Trade-Offs in the Evolution of Dihydrofolate Reductase and Drug Resistance in Plasmodium falciparum
-
Costanzo MS, Brown KM, Hartl DL, Fitness Trade-Offs in the Evolution of Dihydrofolate Reductase and Drug Resistance in Plasmodium falciparum. PLoS ONE. 2011 May 23;6(5):e19636. doi: 10.1371/journal.pone.0019636 21625425
-
(2011)
PLoS ONE
, vol.6
, Issue.5
, pp. 19636
-
-
Costanzo, M.S.1
Brown, K.M.2
Hartl, D.L.3
-
13
-
-
84885671999
-
Accessible Mutational Trajectories for the Evolution of Pyrimethamine Resistance in the Malaria Parasite Plasmodium vivax
-
Jiang P-P, Corbett-Detig RB, Hartl DL, Lozovsky ER, Accessible Mutational Trajectories for the Evolution of Pyrimethamine Resistance in the Malaria Parasite Plasmodium vivax. J Mol Evol. 2013 Sep;77(3):81–91. doi: 10.1007/s00239-013-9582-z 24071997
-
(2013)
J Mol Evol
, vol.77
, Issue.3
, pp. 81-91
-
-
Jiang, P.-P.1
Corbett-Detig, R.B.2
Hartl, D.L.3
Lozovsky, E.R.4
-
14
-
-
67749098058
-
Stepwise acquisition of pyrimethamine resistance in the malaria parasite
-
Lozovsky ER, Chookajorn T, Brown KM, Imwong M, Shaw PJ, Kamchonwongpaisan S, et al. Stepwise acquisition of pyrimethamine resistance in the malaria parasite. Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):12025–30. doi: 10.1073/pnas.0905922106 19587242
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.29
, pp. 12025-12030
-
-
Lozovsky, E.R.1
Chookajorn, T.2
Brown, K.M.3
Imwong, M.4
Shaw, P.J.5
Kamchonwongpaisan, S.6
-
15
-
-
79960624826
-
Hidden randomness between fitness landscapes limits reverse evolution
-
Tan L, Serene S, Chao HX, Gore J, Hidden randomness between fitness landscapes limits reverse evolution. Phys Rev Lett. 2011 May 13;106(19):198102. 21668204
-
(2011)
Phys Rev Lett
, vol.106
, Issue.19
, pp. 198102
-
-
Tan, L.1
Serene, S.2
Chao, H.X.3
Gore, J.4
-
16
-
-
84931274969
-
Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes
-
Palmer AC, Toprak E, Baym M, Kim S, Veres A, Bershtein S, et al. Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes. Nat Commun [Internet]. 2015 Jun 10 [cited 2015 Jun 26];6. http://www.nature.com/ncomms/2015/150610/ncomms8385/full/ncomms8385.html
-
(2015)
Nat Commun
, vol.6
-
-
Palmer, A.C.1
Toprak, E.2
Baym, M.3
Kim, S.4
Veres, A.5
Bershtein, S.6
-
17
-
-
84899647712
-
Fitness landscapes emerging from pharmacodynamic functions in the evolution of multidrug resistance
-
Engelstädter J, Fitness landscapes emerging from pharmacodynamic functions in the evolution of multidrug resistance. J Evol Biol. 2014 May 1;27(5):840–53. doi: 10.1111/jeb.12355 24720850
-
(2014)
J Evol Biol
, vol.27
, Issue.5
, pp. 840-853
-
-
Engelstädter, J.1
-
18
-
-
84861108510
-
Mapping the Environmental Fitness Landscape of a Synthetic Gene Circuit
-
Nevozhay D, Adams RM, Van Itallie E, Bennett MR, Balázsi G, Mapping the Environmental Fitness Landscape of a Synthetic Gene Circuit. PLoS Comput Biol. 2012 Apr 12;8(4):e1002480. doi: 10.1371/journal.pcbi.1002480 22511863
-
(2012)
PLoS Comput Biol
, vol.8
, Issue.4
, pp. 1002480
-
-
Nevozhay, D.1
Adams, R.M.2
Van Itallie, E.3
Bennett, M.R.4
Balázsi, G.5
-
19
-
-
84918527533
-
Evolution in changing environments: Modifiers of mutation, recombination, and migration
-
Carja O, Liberman U, Feldman MW, Evolution in changing environments: Modifiers of mutation, recombination, and migration. Proc Natl Acad Sci. 2014 Nov 26;201417664.
-
(2014)
Proc Natl Acad Sci
-
-
Carja, O.1
Liberman, U.2
Feldman, M.W.3
-
20
-
-
84876850007
-
The environment affects epistatic interactions to alter the topology of an empirical fitness landscape
-
Flynn KM, Cooper TF, Moore FB-G, Cooper VS, The environment affects epistatic interactions to alter the topology of an empirical fitness landscape. PLoS Genet. 2013 Apr;9(4):e1003426. doi: 10.1371/journal.pgen.1003426 23593024
-
(2013)
PLoS Genet
, vol.9
, Issue.4
, pp. 1003426
-
-
Flynn, K.M.1
Cooper, T.F.2
Moore, F.B.-G.3
Cooper, V.S.4
-
21
-
-
4444220133
-
Ecological theory suggests that antimicrobial cycling will not reduce antimicrobial resistance in hospitals
-
Bergstrom CT, Lo M, Lipsitch M, Ecological theory suggests that antimicrobial cycling will not reduce antimicrobial resistance in hospitals. Proc Natl Acad Sci U S A. 2004 Sep 7;101(36):13285–90. 15308772
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, Issue.36
, pp. 13285-13290
-
-
Bergstrom, C.T.1
Lo, M.2
Lipsitch, M.3
-
22
-
-
79953654190
-
Informed switching strongly decreases the prevalence of antibiotic resistance in hospital wards
-
Kouyos RD, Abel Zur Wiesch P, Bonhoeffer S, Informed switching strongly decreases the prevalence of antibiotic resistance in hospital wards. PLoS Comput Biol. 2011 Mar;7(3):e1001094. doi: 10.1371/journal.pcbi.1001094 21390265
-
(2011)
PLoS Comput Biol
, vol.7
, Issue.3
, pp. 1001094
-
-
Kouyos, R.D.1
Abel Zur Wiesch, P.2
Bonhoeffer, S.3
-
23
-
-
84903453394
-
Cycling empirical antibiotic therapy in hospitals: meta-analysis and models
-
Abel Zur Wiesch P, Kouyos R, Abel S, Viechtbauer W, Bonhoeffer S, Cycling empirical antibiotic therapy in hospitals: meta-analysis and models. PLoS Pathog. 2014 Jun;10(6):e1004225. doi: 10.1371/journal.ppat.1004225 24968123
-
(2014)
PLoS Pathog
, vol.10
, Issue.6
, pp. 1004225
-
-
Abel Zur Wiesch, P.1
Kouyos, R.2
Abel, S.3
Viechtbauer, W.4
Bonhoeffer, S.5
-
24
-
-
84925934394
-
Alternating antibiotic treatments constrain evolutionary paths to multidrug resistance
-
Kim S, Lieberman TD, Kishony R, Alternating antibiotic treatments constrain evolutionary paths to multidrug resistance. Proc Natl Acad Sci U S A. 2014 Oct 7;111(40):14494–9. doi: 10.1073/pnas.1409800111 25246554
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, Issue.40
, pp. 14494-14499
-
-
Kim, S.1
Lieberman, T.D.2
Kishony, R.3
-
25
-
-
84908138374
-
The path of least resistance: aggressive or moderate treatment?
-
Kouyos RD, Metcalf CJE, Birger R, Klein EY, Abel Zur Wiesch P, Ankomah P, et al. The path of least resistance: aggressive or moderate treatment? Proc Biol Sci. 2014 Nov 7;281(1794).
-
(2014)
Proc Biol Sci
, vol.281
, Issue.1794
-
-
Kouyos, R.D.1
Metcalf, C.J.E.2
Birger, R.3
Klein, E.Y.4
Abel Zur Wiesch, P.5
Ankomah, P.6
-
26
-
-
84875212396
-
Understanding, predicting and manipulating the genotypic evolution of antibiotic resistance
-
Palmer AC, Kishony R, Understanding, predicting and manipulating the genotypic evolution of antibiotic resistance. Nat Rev Genet. 2013 Apr;14(4):243–8. doi: 10.1038/nrg3351 23419278
-
(2013)
Nat Rev Genet
, vol.14
, Issue.4
, pp. 243-248
-
-
Palmer, A.C.1
Kishony, R.2
-
27
-
-
84929094800
-
Rational design of antibiotic treatment plans: a treatment strategy for managing evolution and reversing resistance
-
Mira PM, Crona K, Greene D, Meza JC, Sturmfels B, Barlow M, Rational design of antibiotic treatment plans: a treatment strategy for managing evolution and reversing resistance. PloS One. 2015;10(5):e0122283. doi: 10.1371/journal.pone.0122283 25946134
-
(2015)
PloS One
, vol.10
, Issue.5
, pp. 0122283
-
-
Mira, P.M.1
Crona, K.2
Greene, D.3
Meza, J.C.4
Sturmfels, B.5
Barlow, M.6
-
28
-
-
84884682077
-
Aggressive chemotherapy and the selection of drug resistant pathogens
-
Huijben S, Bell AS, Sim DG, Tomasello D, Mideo N, Day T, et al. Aggressive chemotherapy and the selection of drug resistant pathogens. PLoS Pathog. 2013 Sep;9(9):e1003578. doi: 10.1371/journal.ppat.1003578 24068922
-
(2013)
PLoS Pathog
, vol.9
, Issue.9
, pp. 1003578
-
-
Huijben, S.1
Bell, A.S.2
Sim, D.G.3
Tomasello, D.4
Mideo, N.5
Day, T.6
-
29
-
-
79960648350
-
Colloquium Paper: The evolution of drug resistance and the curious orthodoxy of aggressive chemotherapy
-
Read AF, Day T, Huijben S, Colloquium Paper: The evolution of drug resistance and the curious orthodoxy of aggressive chemotherapy. Proc Natl Acad Sci. 2011 Jun 20;108(Supplement_2):10871–7.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 10871-10877
-
-
Read, A.F.1
Day, T.2
Huijben, S.3
-
30
-
-
84862022057
-
Enhanced transmission of drug-resistant parasites to mosquitoes following drug treatment in rodent malaria
-
Bell AS, Huijben S, Paaijmans KP, Sim DG, Chan BHK, Nelson WA, et al. Enhanced transmission of drug-resistant parasites to mosquitoes following drug treatment in rodent malaria. PloS One. 2012;7(6):e37172. doi: 10.1371/journal.pone.0037172 22701563
-
(2012)
PloS One
, vol.7
, Issue.6
, pp. 37172
-
-
Bell, A.S.1
Huijben, S.2
Paaijmans, K.P.3
Sim, D.G.4
Chan, B.H.K.5
Nelson, W.A.6
-
31
-
-
66049114296
-
Evolutionary biology and the avoidance of antimicrobial resistance
-
Read AF, Huijben S, Evolutionary biology and the avoidance of antimicrobial resistance. Evol Appl. 2009 Feb;2(1):40–51. doi: 10.1111/j.1752-4571.2008.00066.x 25567846
-
(2009)
Evol Appl
, vol.2
, Issue.1
, pp. 40-51
-
-
Read, A.F.1
Huijben, S.2
-
32
-
-
53749089462
-
Genetic evidence for Plasmodium falciparum resistance to chloroquine and pyrimethamine in Indochina and the Western Pacific between 1984 and 1998
-
Saito-Nakano Y, Tanabe K, Kamei K, Iwagami M, Komaki-Yasuda K, Kawazu S, et al. Genetic evidence for Plasmodium falciparum resistance to chloroquine and pyrimethamine in Indochina and the Western Pacific between 1984 and 1998. Am J Trop Med Hyg. 2008 Oct;79(4):613–9. 18840753
-
(2008)
Am J Trop Med Hyg
, vol.79
, Issue.4
, pp. 613-619
-
-
Saito-Nakano, Y.1
Tanabe, K.2
Kamei, K.3
Iwagami, M.4
Komaki-Yasuda, K.5
Kawazu, S.6
-
33
-
-
33750586478
-
Molecular epidemiology of malaria in Cameroon. XXII. Geographic mapping and distribution of Plasmodium falciparum dihydrofolate reductase (dhfr) mutant alleles
-
Tahar R, Basco LK, Molecular epidemiology of malaria in Cameroon. XXII. Geographic mapping and distribution of Plasmodium falciparum dihydrofolate reductase (dhfr) mutant alleles. Am J Trop Med Hyg. 2006 Sep;75(3):396–401. 16968912
-
(2006)
Am J Trop Med Hyg
, vol.75
, Issue.3
, pp. 396-401
-
-
Tahar, R.1
Basco, L.K.2
-
34
-
-
34249698626
-
Sulfadoxine-pyrimethamine efficacy and selection of Plasmodium falciparum DHFR mutations in Burkina Faso before its introduction as intermittent preventive treatment for pregnant women
-
Tinto H, Ouédraogo JB, Zongo I, van Overmeir C, van Marck E, Guiguemdé TR, et al. Sulfadoxine-pyrimethamine efficacy and selection of Plasmodium falciparum DHFR mutations in Burkina Faso before its introduction as intermittent preventive treatment for pregnant women. Am J Trop Med Hyg. 2007 Apr;76(4):608–13. 17426157
-
(2007)
Am J Trop Med Hyg
, vol.76
, Issue.4
, pp. 608-613
-
-
Tinto, H.1
Ouédraogo, J.B.2
Zongo, I.3
van Overmeir, C.4
van Marck, E.5
Guiguemdé, T.R.6
-
35
-
-
3042644635
-
Drug resistance in Plasmodium falciparum from the Chittagong Hill Tracts, Bangladesh
-
van den Broek IVF, van der Wardt S, Talukder L, Chakma S, Brockman A, Nair S, et al. Drug resistance in Plasmodium falciparum from the Chittagong Hill Tracts, Bangladesh. Trop Med Int Health TM IH. 2004 Jun;9(6):680–7. 15189458
-
(2004)
Trop Med Int Health TM IH
, vol.9
, Issue.6
, pp. 680-687
-
-
van den Broek, I.V.F.1
van der Wardt, S.2
Talukder, L.3
Chakma, S.4
Brockman, A.5
Nair, S.6
-
36
-
-
33748751585
-
Defining the origin of Plasmodium falciparum resistant dhfr isolates in Senegal
-
Ndiaye D, Daily JP, Sarr O, Ndir O, Gaye O, Mboup S, et al. Defining the origin of Plasmodium falciparum resistant dhfr isolates in Senegal. Acta Trop. 2006 Aug;99(1):106–11. 16905111
-
(2006)
Acta Trop
, vol.99
, Issue.1
, pp. 106-111
-
-
Ndiaye, D.1
Daily, J.P.2
Sarr, O.3
Ndir, O.4
Gaye, O.5
Mboup, S.6
-
37
-
-
46349109273
-
Characteristics of Plasmodium falciparum dhfr haplotypes that confer pyrimethamine resistance, Kilifi, Kenya, 1987–2006
-
Certain LK, Briceño M, Kiara SM, Nzila AM, Watkins WM, Sibley CH, Characteristics of Plasmodium falciparum dhfr haplotypes that confer pyrimethamine resistance, Kilifi, Kenya, 1987–2006. J Infect Dis. 2008 Jun 15;197(12):1743–51. doi: 10.1086/588198 18513156
-
(2008)
J Infect Dis
, vol.197
, Issue.12
, pp. 1743-1751
-
-
Certain, L.K.1
Briceño, M.2
Kiara, S.M.3
Nzila, A.M.4
Watkins, W.M.5
Sibley, C.H.6
-
38
-
-
29844438495
-
Molecular surveillance of mutations in dihydrofolate reductase and dihydropteroate synthase genes of Plasmodium falciparum in Ethiopia
-
Gebru-Woldearegai T, Hailu A, Grobusch MP, Kun JFJ, Molecular surveillance of mutations in dihydrofolate reductase and dihydropteroate synthase genes of Plasmodium falciparum in Ethiopia. Am J Trop Med Hyg. 2005 Dec;73(6):1131–4. 16354825
-
(2005)
Am J Trop Med Hyg
, vol.73
, Issue.6
, pp. 1131-1134
-
-
Gebru-Woldearegai, T.1
Hailu, A.2
Grobusch, M.P.3
Kun, J.F.J.4
-
39
-
-
33845753891
-
Genotypes and in vivo resistance of Plasmodium falciparum isolates in an endemic region of Iran
-
Heidari A, Dittrich S, Jelinek T, Kheirandish A, Banihashemi K, Keshavarz H, Genotypes and in vivo resistance of Plasmodium falciparum isolates in an endemic region of Iran. Parasitol Res. 2007 Feb;100(3):589–92. 17024359
-
(2007)
Parasitol Res
, vol.100
, Issue.3
, pp. 589-592
-
-
Heidari, A.1
Dittrich, S.2
Jelinek, T.3
Kheirandish, A.4
Banihashemi, K.5
Keshavarz, H.6
-
40
-
-
44849092217
-
Escalating Plasmodium falciparum antifolate drug resistance mutations in Macha, rural Zambia
-
Mkulama MAP, Chishimba S, Sikalima J, Rouse P, Thuma PE, Mharakurwa S, Escalating Plasmodium falciparum antifolate drug resistance mutations in Macha, rural Zambia. Malar J. 2008;7:87. doi: 10.1186/1475-2875-7-87 18495008
-
(2008)
Malar J
, vol.7
, pp. 87
-
-
Mkulama, M.A.P.1
Chishimba, S.2
Sikalima, J.3
Rouse, P.4
Thuma, P.E.5
Mharakurwa, S.6
-
41
-
-
27844584255
-
Geographical distribution of selected and putatively neutral SNPs in Southeast Asian malaria parasites
-
Anderson TJC, Nair S, Sudimack D, Williams JT, Mayxay M, Newton PN, et al. Geographical distribution of selected and putatively neutral SNPs in Southeast Asian malaria parasites. Mol Biol Evol. 2005 Dec;22(12):2362–74. 16093566
-
(2005)
Mol Biol Evol
, vol.22
, Issue.12
, pp. 2362-2374
-
-
Anderson, T.J.C.1
Nair, S.2
Sudimack, D.3
Williams, J.T.4
Mayxay, M.5
Newton, P.N.6
-
42
-
-
33645755404
-
Quadruple mutations in dihydrofolate reductase of Plasmodium falciparum isolates from Car Nicobar Island, India
-
Ahmed A, Das MK, Dev V, Saifi MA, Wajihullah null Sharma YD, Quadruple mutations in dihydrofolate reductase of Plasmodium falciparum isolates from Car Nicobar Island, India. Antimicrob Agents Chemother. 2006 Apr;50(4):1546–9. 16569880
-
(2006)
Antimicrob Agents Chemother
, vol.50
, Issue.4
, pp. 1546-1549
-
-
Ahmed, A.1
Das, M.K.2
Dev, V.3
Saifi, M.A.4
Wajihullah null5
Sharma, Y.D.6
-
43
-
-
84969418951
-
-
Molecular assessment of drug resistance in Plasmodium falciparum from Bahr El Gazal Province, Sudan—Anderson—2003—Tropical Medicine & International Health—Wiley Online Library [Internet]. [cited 2015 Aug 19]. Available from: http://onlinelibrary.wiley.com/doi/10.1046/j.1360-2276.2003.01144.x/abstract
-
-
-
-
44
-
-
84856391211
-
Monitoring of plasma concentration of pyrimethamine (PYR) in infants with congenital Toxoplasma gondii infection—own observations
-
Lipka B, Milewska-Bobula B, Filipek M, Monitoring of plasma concentration of pyrimethamine (PYR) in infants with congenital Toxoplasma gondii infection—own observations. Wiad Parazytol. 2011;57(2):87–92. 21682092
-
(2011)
Wiad Parazytol
, vol.57
, Issue.2
, pp. 87-92
-
-
Lipka, B.1
Milewska-Bobula, B.2
Filipek, M.3
-
45
-
-
24144444096
-
Association between the pharmacokinetics and in vivo therapeutic efficacy of sulfadoxine-pyrimethamine in Malawian children
-
Dzinjalamala FK, Macheso A, Kublin JG, Taylor TE, Barnes KI, Molyneux ME, et al. Association between the pharmacokinetics and in vivo therapeutic efficacy of sulfadoxine-pyrimethamine in Malawian children. Antimicrob Agents Chemother. 2005 Sep;49(9):3601–6. 16127028
-
(2005)
Antimicrob Agents Chemother
, vol.49
, Issue.9
, pp. 3601-3606
-
-
Dzinjalamala, F.K.1
Macheso, A.2
Kublin, J.G.3
Taylor, T.E.4
Barnes, K.I.5
Molyneux, M.E.6
-
46
-
-
18244404066
-
Blood folate concentrations and in vivo sulfadoxine-pyrimethamine failure in Malawian children with uncomplicated Plasmodium falciparum malaria
-
Dzinjalamala FK, Macheso A, Kublin JG, Taylor TE, Barnes KI, Molyneux ME, et al. Blood folate concentrations and in vivo sulfadoxine-pyrimethamine failure in Malawian children with uncomplicated Plasmodium falciparum malaria. Am J Trop Med Hyg. 2005 Mar;72(3):267–72. 15772319
-
(2005)
Am J Trop Med Hyg
, vol.72
, Issue.3
, pp. 267-272
-
-
Dzinjalamala, F.K.1
Macheso, A.2
Kublin, J.G.3
Taylor, T.E.4
Barnes, K.I.5
Molyneux, M.E.6
-
47
-
-
0025029119
-
Multiple-dose pharmacokinetic study of proguanil and cycloguanil following 12-hourly administration of 100 mg proguanil hydrochloride
-
Jamaludin A, Mohamad M, Navaratnam V, Yeoh PY, Wernsdorfer WH, Multiple-dose pharmacokinetic study of proguanil and cycloguanil following 12-hourly administration of 100 mg proguanil hydrochloride. Trop Med Parasitol Off Organ Dtsch Tropenmedizinische Ges Dtsch Ges Für Tech Zusammenarbeit GTZ. 1990 Sep;41(3):268–72.
-
(1990)
Trop Med Parasitol Off Organ Dtsch Tropenmedizinische Ges Dtsch Ges Für Tech Zusammenarbeit GTZ
, vol.41
, Issue.3
, pp. 268-272
-
-
Jamaludin, A.1
Mohamad, M.2
Navaratnam, V.3
Yeoh, P.Y.4
Wernsdorfer, W.H.5
-
48
-
-
0020471763
-
Plasma concentrations of pyrimethamine and sulfadoxine and evaluation of pharmaco-kinetic data by computerized curve fitting
-
Weidekamm E, Plozza-Nottebrock H, Forgo I, Dubach UC, Plasma concentrations of pyrimethamine and sulfadoxine and evaluation of pharmaco-kinetic data by computerized curve fitting. Bull World Health Organ. 1982;60(1):115–22. 6979415
-
(1982)
Bull World Health Organ
, vol.60
, Issue.1
, pp. 115-122
-
-
Weidekamm, E.1
Plozza-Nottebrock, H.2
Forgo, I.3
Dubach, U.C.4
-
49
-
-
84889582432
-
Should evolutionary geneticists worry about higher-order epistasis?
-
Weinreich DM, Lan Y, Wylie CS, Heckendorn RB, Should evolutionary geneticists worry about higher-order epistasis? Curr Opin Genet Dev. 2013 Dec;23(6):700–7. doi: 10.1016/j.gde.2013.10.007 24290990
-
(2013)
Curr Opin Genet Dev
, vol.23
, Issue.6
, pp. 700-707
-
-
Weinreich, D.M.1
Lan, Y.2
Wylie, C.S.3
Heckendorn, R.B.4
-
50
-
-
84901645732
-
G×G×E for lifespan in Drosophila: mitochondrial, nuclear, and dietary interactions that modify longevity
-
Zhu C-T, Ingelmo P, Rand DM, G×G×E for lifespan in Drosophila: mitochondrial, nuclear, and dietary interactions that modify longevity. PLoS Genet. 2014;10(5):e1004354. doi: 10.1371/journal.pgen.1004354 24832080
-
(2014)
PLoS Genet
, vol.10
, Issue.5
, pp. 1004354
-
-
Zhu, C.-T.1
Ingelmo, P.2
Rand, D.M.3
-
51
-
-
1842483226
-
Pervasive joint influence of epistasis and plasticity on mutational effects in Escherichia coli
-
Remold SK, Lenski RE, Pervasive joint influence of epistasis and plasticity on mutational effects in Escherichia coli. Nat Genet. 2004 Apr;36(4):423–6. 15072075
-
(2004)
Nat Genet
, vol.36
, Issue.4
, pp. 423-426
-
-
Remold, S.K.1
Lenski, R.E.2
-
52
-
-
24644505748
-
simuPOP: a forward-time population genetics simulation environment
-
Peng B, Kimmel M, simuPOP: a forward-time population genetics simulation environment. Bioinforma Oxf Engl. 2005 Sep 15;21(18):3686–7.
-
(2005)
Bioinforma Oxf Engl
, vol.21
, Issue.18
, pp. 3686-3687
-
-
Peng, B.1
Kimmel, M.2
-
53
-
-
0032407858
-
Cycloguanil and its parent compound proguanil demonstrate distinct activities against Plasmodium falciparum malaria parasites transformed with human dihydrofolate reductase
-
Fidock DA, Nomura T, Wellems TE, Cycloguanil and its parent compound proguanil demonstrate distinct activities against Plasmodium falciparum malaria parasites transformed with human dihydrofolate reductase. Mol Pharmacol. 1998 Dec;54(6):1140–7. 9855645
-
(1998)
Mol Pharmacol
, vol.54
, Issue.6
, pp. 1140-1147
-
-
Fidock, D.A.1
Nomura, T.2
Wellems, T.E.3
-
54
-
-
4444304344
-
Pharmacodynamic interactions among atovaquone, proguanil and cycloguanil against Plasmodium falciparum in vitro
-
Thapar MM, Gupta S, Spindler C, Wernsdorfer WH, Björkman A, Pharmacodynamic interactions among atovaquone, proguanil and cycloguanil against Plasmodium falciparum in vitro. Trans R Soc Trop Med Hyg. 2003 Jun;97(3):331–7. 15228254
-
(2003)
Trans R Soc Trop Med Hyg
, vol.97
, Issue.3
, pp. 331-337
-
-
Thapar, M.M.1
Gupta, S.2
Spindler, C.3
Wernsdorfer, W.H.4
Björkman, A.5
-
55
-
-
0025148938
-
Chemotherapy and drug resistance in malaria
-
Cowman AF, Foote SJ, Chemotherapy and drug resistance in malaria. Int J Parasitol. 1990 Jul;20(4):503–13. 2210944
-
(1990)
Int J Parasitol
, vol.20
, Issue.4
, pp. 503-513
-
-
Cowman, A.F.1
Foote, S.J.2
-
56
-
-
21044446722
-
Rapid evolutionary escape by large populations from local fitness peaks is likely in nature
-
Weinreich DM, Chao L, Rapid evolutionary escape by large populations from local fitness peaks is likely in nature. Evol Int J Org Evol. 2005 Jun;59(6):1175–82.
-
(2005)
Evol Int J Org Evol
, vol.59
, Issue.6
, pp. 1175-1182
-
-
Weinreich, D.M.1
Chao, L.2
-
57
-
-
1942453330
-
Stochastic Tunnels in Evolutionary Dynamics
-
Iwasa Y, Michor F, Nowak MA, Stochastic Tunnels in Evolutionary Dynamics. Genetics. 2004 Mar 1;166(3):1571–9. 15082570
-
(2004)
Genetics
, vol.166
, Issue.3
, pp. 1571-1579
-
-
Iwasa, Y.1
Michor, F.2
Nowak, M.A.3
-
58
-
-
34247881991
-
Analysis of epistatic interactions and fitness landscapes using a new geometric approach
-
Beerenwinkel N, Pachter L, Sturmfels B, Elena SF, Lenski RE, Analysis of epistatic interactions and fitness landscapes using a new geometric approach. BMC Evol Biol. 2007;7:60. 17433106
-
(2007)
BMC Evol Biol
, vol.7
, pp. 60
-
-
Beerenwinkel, N.1
Pachter, L.2
Sturmfels, B.3
Elena, S.F.4
Lenski, R.E.5
-
59
-
-
0028996002
-
Multiple Fitness Peaks and Epistasis
-
Whitlock MC, Phillips PC, Moore FB, Tonsor SJ, Multiple Fitness Peaks and Epistasis. Annu Rev Ecol Syst. 1995;26(1):601–29.
-
(1995)
Annu Rev Ecol Syst
, vol.26
, Issue.1
, pp. 601-629
-
-
Whitlock, M.C.1
Phillips, P.C.2
Moore, F.B.3
Tonsor, S.J.4
-
60
-
-
84908131322
-
Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses
-
Lagator M, Colegrave N, Neve P, Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Proc Biol Sci. 2014 Nov 7;281(1794).
-
(2014)
Proc Biol Sci
, vol.281
, Issue.1794
-
-
Lagator, M.1
Colegrave, N.2
Neve, P.3
-
61
-
-
84969432500
-
Finding the boundary between evolutionary basins of attraction, and implications for Wright’s fitness landscape analogy
-
Weinreich DM, Sindi S, Watson RA, Finding the boundary between evolutionary basins of attraction, and implications for Wright’s fitness landscape analogy. J Stat Mech Theory Exp. 2012 Mar;523–36.
-
(2012)
J Stat Mech Theory Exp
, pp. 523-536
-
-
Weinreich, D.M.1
Sindi, S.2
Watson, R.A.3
-
62
-
-
84901847160
-
Inferring fitness landscapes by regression produces biased estimates of epistasis
-
Otwinowski J, Plotkin JB, Inferring fitness landscapes by regression produces biased estimates of epistasis. Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):E2301–9. doi: 10.1073/pnas.1400849111 24843135
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, Issue.22
, pp. 2301-2309
-
-
Otwinowski, J.1
Plotkin, J.B.2
-
63
-
-
61349112079
-
From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation
-
Mustonen V, Lässig M, From fitness landscapes to seascapes: non-equilibrium dynamics of selection and adaptation. Trends Genet. 2009 Mar;25(3):111–9. doi: 10.1016/j.tig.2009.01.002 19232770
-
(2009)
Trends Genet
, vol.25
, Issue.3
, pp. 111-119
-
-
Mustonen, V.1
Lässig, M.2
-
64
-
-
0033951987
-
Cross-resistance of topoisomerase I and II inhibitors in neuroblastoma cell lines
-
Keshelava N, Groshen S, Reynolds CP, Cross-resistance of topoisomerase I and II inhibitors in neuroblastoma cell lines. Cancer Chemother Pharmacol. 2000;45(1):1–8. 10647494
-
(2000)
Cancer Chemother Pharmacol
, vol.45
, Issue.1
, pp. 1-8
-
-
Keshelava, N.1
Groshen, S.2
Reynolds, C.P.3
-
65
-
-
84922718635
-
Prediction of antibiotic resistance by gene expression profiles
-
Suzuki S, Horinouchi T, Furusawa C, Prediction of antibiotic resistance by gene expression profiles. Nat Commun. 2014 Dec 17;5:5792. doi: 10.1038/ncomms6792 25517437
-
(2014)
Nat Commun
, vol.5
, pp. 5792
-
-
Suzuki, S.1
Horinouchi, T.2
Furusawa, C.3
-
66
-
-
84868664375
-
Antiretroviral dynamics determines HIV evolution and predicts therapy outcome
-
Rosenbloom DIS, Hill AL, Rabi SA, Siliciano RF, Nowak MA, Antiretroviral dynamics determines HIV evolution and predicts therapy outcome. Nat Med. 2012 Sep;18(9):1378–85. 22941277
-
(2012)
Nat Med
, vol.18
, Issue.9
, pp. 1378-1385
-
-
Rosenbloom, D.I.S.1
Hill, A.L.2
Rabi, S.A.3
Siliciano, R.F.4
Nowak, M.A.5
-
67
-
-
0017076160
-
Derivation and properties of Michaelis-Menten type and Hill type equations for reference ligands
-
Chou TC, Derivation and properties of Michaelis-Menten type and Hill type equations for reference ligands. J Theor Biol. 1976 Jul 7;59(2):253–76. 957690
-
(1976)
J Theor Biol
, vol.59
, Issue.2
, pp. 253-276
-
-
Chou, T.C.1
-
68
-
-
84930958396
-
Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance
-
Moreno-Gamez S, Hill AL, Rosenbloom DIS, Petrov DA, Nowak MA, Pennings PS, Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance. Proc Natl Acad Sci U S A. 2015 Jun 2;112(22):E2874–83. doi: 10.1073/pnas.1424184112 26038564
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, Issue.22
, pp. 2874-2883
-
-
Moreno-Gamez, S.1
Hill, A.L.2
Rosenbloom, D.I.S.3
Petrov, D.A.4
Nowak, M.A.5
Pennings, P.S.6
|