-
1
-
-
27144513224
-
Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution
-
Allen T.M., Altfeld M., Geer S.C., Kalife E.T., Moore C., O'Sullivan K.M., Desouza I., Feeney M.E., Eldridge R.L., Maier E.L., et al. Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution. J. Virol. 2005, 79:13239-13249.
-
(2005)
J. Virol.
, vol.79
, pp. 13239-13249
-
-
Allen, T.M.1
Altfeld, M.2
Geer, S.C.3
Kalife, E.T.4
Moore, C.5
O'Sullivan, K.M.6
Desouza, I.7
Feeney, M.E.8
Eldridge, R.L.9
Maier, E.L.10
-
3
-
-
49849090609
-
Greater viral rebound and reduced time to resume antiretroviral therapy after therapeutic immunization with the ALVAC-HIV vaccine (vCP1452)
-
ORVACS Study Group
-
Autran B., Murphy R.L., Costagliola D., Tubiana R., Clotet B., Gatell J., Staszewski S., Wincker N., Assoumou L., El-Habib R., et al. Greater viral rebound and reduced time to resume antiretroviral therapy after therapeutic immunization with the ALVAC-HIV vaccine (vCP1452). AIDS 2008, 22:1313-1322. ORVACS Study Group.
-
(2008)
AIDS
, vol.22
, pp. 1313-1322
-
-
Autran, B.1
Murphy, R.L.2
Costagliola, D.3
Tubiana, R.4
Clotet, B.5
Gatell, J.6
Staszewski, S.7
Wincker, N.8
Assoumou, L.9
El-Habib, R.10
-
4
-
-
58149375456
-
Elite control of HIV infection: implications for vaccine design
-
Baker B.M., Block B.L., Rothchild A.C., Walker B.D. Elite control of HIV infection: implications for vaccine design. Expert Opin. Biol. Ther. 2009, 9:55-69.
-
(2009)
Expert Opin. Biol. Ther.
, vol.9
, pp. 55-69
-
-
Baker, B.M.1
Block, B.L.2
Rothchild, A.C.3
Walker, B.D.4
-
5
-
-
0043230411
-
Spin glasses: experimental facts, theoretical concepts, and open questions
-
Binder K., Young A.P. Spin glasses: experimental facts, theoretical concepts, and open questions. Rev. Mod. Phys. 1986, 58:801-976.
-
(1986)
Rev. Mod. Phys.
, vol.58
, pp. 801-976
-
-
Binder, K.1
Young, A.P.2
-
6
-
-
36048995423
-
Escape and compensation from early HLA-B57-mediated cytotoxic T-lymphocyte pressure on human immunodeficiency virus type 1 Gag alter capsid interactions with cyclophilin A
-
Brockman M.A., Schneidewind A., Lahaie M., Schmidt A., Miura T., Desouza I., Ryvkin F., Derdeyn C.A., Allen S., Hunter E., et al. Escape and compensation from early HLA-B57-mediated cytotoxic T-lymphocyte pressure on human immunodeficiency virus type 1 Gag alter capsid interactions with cyclophilin A. J. Virol. 2007, 81:12608-12618.
-
(2007)
J. Virol.
, vol.81
, pp. 12608-12618
-
-
Brockman, M.A.1
Schneidewind, A.2
Lahaie, M.3
Schmidt, A.4
Miura, T.5
Desouza, I.6
Ryvkin, F.7
Derdeyn, C.A.8
Allen, S.9
Hunter, E.10
-
7
-
-
78049495989
-
Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection
-
Brockman M.A., Brumme Z.L., Brumme C.J., Miura T., Sela J., Rosato P.C., Kadie C.M., Carlson J.M., Markle T.J., Streeck H., et al. Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection. J. Virol. 2010, 84:11937-11949.
-
(2010)
J. Virol.
, vol.84
, pp. 11937-11949
-
-
Brockman, M.A.1
Brumme, Z.L.2
Brumme, C.J.3
Miura, T.4
Sela, J.5
Rosato, P.C.6
Kadie, C.M.7
Carlson, J.M.8
Markle, T.J.9
Streeck, H.10
-
8
-
-
68949209789
-
HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins
-
Brumme Z.L., John M., Carlson J.M., Brumme C.J., Chan D., Brockman M.A., Swenson L.C., Tao I., Szeto S., Rosato P., et al. HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins. PLoS ONE 2009, 4:e6687.
-
(2009)
PLoS ONE
, vol.4
-
-
Brumme, Z.L.1
John, M.2
Carlson, J.M.3
Brumme, C.J.4
Chan, D.5
Brockman, M.A.6
Swenson, L.C.7
Tao, I.8
Szeto, S.9
Rosato, P.10
-
9
-
-
34547138161
-
*5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection
-
*5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection. J. Virol. 2007, 81:8346-8351.
-
(2007)
J. Virol.
, vol.81
, pp. 8346-8351
-
-
Crawford, H.1
Prado, J.G.2
Leslie, A.3
Hué, S.4
Honeyborne, I.5
Reddy, S.6
van der Stok, M.7
Mncube, Z.8
Brander, C.9
Rousseau, C.10
-
10
-
-
79960999556
-
Coordinate linkage of HIV evolution reveals regions of immunological vulnerability
-
Dahirel V., Shekhar K., Pereyra F., Miura T., Artyomov M., Talsania S., Allen T.M., Altfeld M., Carrington M., Irvine D.J., et al. Coordinate linkage of HIV evolution reveals regions of immunological vulnerability. Proc. Natl. Acad. Sci. USA 2011, 108:11530-11535.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 11530-11535
-
-
Dahirel, V.1
Shekhar, K.2
Pereyra, F.3
Miura, T.4
Artyomov, M.5
Talsania, S.6
Allen, T.M.7
Altfeld, M.8
Carrington, M.9
Irvine, D.J.10
-
11
-
-
56649089680
-
Rates of HIV immune escape and reversion: implications for vaccination
-
Davenport M.P., Loh L., Petravic J., Kent S.J. Rates of HIV immune escape and reversion: implications for vaccination. Trends Microbiol. 2008, 16:561-566.
-
(2008)
Trends Microbiol.
, vol.16
, pp. 561-566
-
-
Davenport, M.P.1
Loh, L.2
Petravic, J.3
Kent, S.J.4
-
12
-
-
11144357869
-
Immune selection for altered antigen processing leads to cytotoxic T lymphocyte escape in chronic HIV-1 infection
-
Draenert R., Le Gall S., Pfafferott K.J., Leslie A.J., Chetty P., Brander C., Holmes E.C., Chang S.C., Feeney M.E., Addo M.M., et al. Immune selection for altered antigen processing leads to cytotoxic T lymphocyte escape in chronic HIV-1 infection. J. Exp. Med. 2004, 199:905-915.
-
(2004)
J. Exp. Med.
, vol.199
, pp. 905-915
-
-
Draenert, R.1
Le Gall, S.2
Pfafferott, K.J.3
Leslie, A.J.4
Chetty, P.5
Brander, C.6
Holmes, E.C.7
Chang, S.C.8
Feeney, M.E.9
Addo, M.M.10
-
13
-
-
79952213493
-
Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection
-
Ferrari G., Korber B., Goonetilleke N., Liu M.K., Turnbull E.L., Salazar-Gonzalez J.F., Hawkins N., Self S., Watson S., Betts M.R., et al. Relationship between functional profile of HIV-1 specific CD8 T cells and epitope variability with the selection of escape mutants in acute HIV-1 infection. PLoS Pathog. 2011, 7:e1001273.
-
(2011)
PLoS Pathog.
, vol.7
-
-
Ferrari, G.1
Korber, B.2
Goonetilleke, N.3
Liu, M.K.4
Turnbull, E.L.5
Salazar-Gonzalez, J.F.6
Hawkins, N.7
Self, S.8
Watson, S.9
Betts, M.R.10
-
14
-
-
77749232586
-
Identification and optimal definition of HIV-derived cytotoxic T-lymphocyte (CTL) epitopes for the study of CTL escape, functional avidity and viral evolution
-
Los Alamos National Laboratory, Theoretical Biology and Biophysics Los Alamos, New Mexico, B.T. Korber, C. Brander, B.F. Haynes, R. Koup, J.P. Moore, B.D. Walker, D.I. Watkins (Eds.)
-
Frahm N., Baker B., Brander C. Identification and optimal definition of HIV-derived cytotoxic T-lymphocyte (CTL) epitopes for the study of CTL escape, functional avidity and viral evolution. HIV Molecular Immunology 2008 2008, 3-24. Los Alamos National Laboratory, Theoretical Biology and Biophysics Los Alamos, New Mexico. B.T. Korber, C. Brander, B.F. Haynes, R. Koup, J.P. Moore, B.D. Walker, D.I. Watkins (Eds.).
-
(2008)
HIV Molecular Immunology 2008
, pp. 3-24
-
-
Frahm, N.1
Baker, B.2
Brander, C.3
-
15
-
-
2342465557
-
Reversion of CTL escape-variant immunodeficiency viruses in vivo
-
Friedrich T.C., Dodds E.J., Yant L.J., Vojnov L., Rudersdorf R., Cullen C., Evans D.T., Desrosiers R.C., Mothé B.R., Sidney J., et al. Reversion of CTL escape-variant immunodeficiency viruses in vivo. Nat. Med. 2004, 10:275-281.
-
(2004)
Nat. Med.
, vol.10
, pp. 275-281
-
-
Friedrich, T.C.1
Dodds, E.J.2
Yant, L.J.3
Vojnov, L.4
Rudersdorf, R.5
Cullen, C.6
Evans, D.T.7
Desrosiers, R.C.8
Mothé, B.R.9
Sidney, J.10
-
16
-
-
80054921082
-
Vaccine-induced HIV-specific CD8+ T cells utilize preferential HLA alleles and target-specific regions of HIV-1
-
Friedrich D., Jalbert E., Dinges W.L., Sidney J., Sette A., Huang Y., McElrath M.J., Horton H. Vaccine-induced HIV-specific CD8+ T cells utilize preferential HLA alleles and target-specific regions of HIV-1. J. Acquir. Immune Defic. Syndr. 2011, 58:248-252.
-
(2011)
J. Acquir. Immune Defic. Syndr.
, vol.58
, pp. 248-252
-
-
Friedrich, D.1
Jalbert, E.2
Dinges, W.L.3
Sidney, J.4
Sette, A.5
Huang, Y.6
McElrath, M.J.7
Horton, H.8
-
17
-
-
78651292217
-
Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations
-
Database issue
-
Gonzalez-Galarza F.F., Christmas S., Middleton D., Jones A.R. Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Res. 2011, 39(Database issue):D913-D919.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Gonzalez-Galarza, F.F.1
Christmas, S.2
Middleton, D.3
Jones, A.R.4
-
18
-
-
3543078012
-
HIV and SIV CTL escape: implications for vaccine design
-
Goulder P.J., Watkins D.I. HIV and SIV CTL escape: implications for vaccine design. Nat. Rev. Immunol. 2004, 4:630-640.
-
(2004)
Nat. Rev. Immunol.
, vol.4
, pp. 630-640
-
-
Goulder, P.J.1
Watkins, D.I.2
-
19
-
-
61949216736
-
Effector memory T cell responses are associated with protection of rhesus monkeys from mucosal simian immunodeficiency virus challenge
-
Hansen S.G., Vieville C., Whizin N., Coyne-Johnson L., Siess D.C., Drummond D.D., Legasse A.W., Axthelm M.K., Oswald K., Trubey C.M., et al. Effector memory T cell responses are associated with protection of rhesus monkeys from mucosal simian immunodeficiency virus challenge. Nat. Med. 2009, 15:293-299.
-
(2009)
Nat. Med.
, vol.15
, pp. 293-299
-
-
Hansen, S.G.1
Vieville, C.2
Whizin, N.3
Coyne-Johnson, L.4
Siess, D.C.5
Drummond, D.D.6
Legasse, A.W.7
Axthelm, M.K.8
Oswald, K.9
Trubey, C.M.10
-
20
-
-
79957618772
-
Profound early control of highly pathogenic SIV by an effector memory T-cell vaccine
-
Hansen S.G., Ford J.C., Lewis M.S., Ventura A.B., Hughes C.M., Coyne-Johnson L., Whizin N., Oswald K., Shoemaker R., Swanson T., et al. Profound early control of highly pathogenic SIV by an effector memory T-cell vaccine. Nature 2011, 473:523-527.
-
(2011)
Nature
, vol.473
, pp. 523-527
-
-
Hansen, S.G.1
Ford, J.C.2
Lewis, M.S.3
Ventura, A.B.4
Hughes, C.M.5
Coyne-Johnson, L.6
Whizin, N.7
Oswald, K.8
Shoemaker, R.9
Swanson, T.10
-
21
-
-
0033152036
-
New class I and II HLA alleles strongly associated with opposite patterns of progression to AIDS
-
Hendel H., Caillat-Zucman S., Lebuanec H., Carrington M., O'Brien S., Andrieu J.M., Schächter F., Zagury D., Rappaport J., Winkler C., et al. New class I and II HLA alleles strongly associated with opposite patterns of progression to AIDS. J. Immunol. 1999, 162:6942-6946.
-
(1999)
J. Immunol.
, vol.162
, pp. 6942-6946
-
-
Hendel, H.1
Caillat-Zucman, S.2
Lebuanec, H.3
Carrington, M.4
O'Brien, S.5
Andrieu, J.M.6
Schächter, F.7
Zagury, D.8
Rappaport, J.9
Winkler, C.10
-
22
-
-
84861214061
-
Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection
-
Henn M.R., Boutwell C.L., Charlebois P., Lennon N.J., Power K.A., Macalalad A.R., Berlin A.M., Malboeuf C.M., Ryan E.M., Gnerre S., et al. Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. PLoS Pathog. 2012, 8:e1002529.
-
(2012)
PLoS Pathog.
, vol.8
-
-
Henn, M.R.1
Boutwell, C.L.2
Charlebois, P.3
Lennon, N.J.4
Power, K.A.5
Macalalad, A.R.6
Berlin, A.M.7
Malboeuf, C.M.8
Ryan, E.M.9
Gnerre, S.10
-
23
-
-
79955423458
-
A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase
-
Hinkley T., Martins J., Chappey C., Haddad M., Stawiski E., Whitcomb J.M., Petropoulos C.J., Bonhoeffer S. A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase. Nat. Genet. 2011, 43:487-489.
-
(2011)
Nat. Genet.
, vol.43
, pp. 487-489
-
-
Hinkley, T.1
Martins, J.2
Chappey, C.3
Haddad, M.4
Stawiski, E.5
Whitcomb, J.M.6
Petropoulos, C.J.7
Bonhoeffer, S.8
-
24
-
-
79955533328
-
Progression to AIDS in South Africa is associated with both reverting and compensatory viral mutations
-
Bloemfontein-Oxford Collaborative Group
-
Huang K.H., Goedhals D., Carlson J.M., Brockman M.A., Mishra S., Brumme Z.L., Hickling S., Tang C.S., Miura T., Seebregts C., et al. Progression to AIDS in South Africa is associated with both reverting and compensatory viral mutations. PLoS ONE 2011, 6:e19018. Bloemfontein-Oxford Collaborative Group.
-
(2011)
PLoS ONE
, vol.6
-
-
Huang, K.H.1
Goedhals, D.2
Carlson, J.M.3
Brockman, M.A.4
Mishra, S.5
Brumme, Z.L.6
Hickling, S.7
Tang, C.S.8
Miura, T.9
Seebregts, C.10
-
25
-
-
11944266539
-
Information theory and statistical mechanics
-
Jaynes E.T. Information theory and statistical mechanics. Phys. Rev. 1957, 106:620-630.
-
(1957)
Phys. Rev.
, vol.106
, pp. 620-630
-
-
Jaynes, E.T.1
-
26
-
-
84859257158
-
Exploring the complexity of the HIV-1 fitness landscape
-
Kouyos R.D., Leventhal G.E., Hinkley T., Haddad M., Whitcomb J.M., Petropoulos C.J., Bonhoeffer S. Exploring the complexity of the HIV-1 fitness landscape. PLoS Genet. 2012, 8:e1002551.
-
(2012)
PLoS Genet.
, vol.8
-
-
Kouyos, R.D.1
Leventhal, G.E.2
Hinkley, T.3
Haddad, M.4
Whitcomb, J.M.5
Petropoulos, C.J.6
Bonhoeffer, S.7
-
27
-
-
58149175798
-
Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progression
-
Lee H.Y., Perelson A.S., Park S.-C., Leitner T. Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progression. PLoS Comput. Biol. 2008, 4:e1000240.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Lee, H.Y.1
Perelson, A.S.2
Park, S.-C.3
Leitner, T.4
-
28
-
-
1842741699
-
HIV evolution: CTL escape mutation and reversion after transmission
-
Leslie A.J., Pfafferott K.J., Chetty P., Draenert R., Addo M.M., Feeney M., Tang Y., Holmes E.C., Allen T., Prado J.G., et al. HIV evolution: CTL escape mutation and reversion after transmission. Nat. Med. 2004, 10:282-289.
-
(2004)
Nat. Med.
, vol.10
, pp. 282-289
-
-
Leslie, A.J.1
Pfafferott, K.J.2
Chetty, P.3
Draenert, R.4
Addo, M.M.5
Feeney, M.6
Tang, Y.7
Holmes, E.C.8
Allen, T.9
Prado, J.G.10
-
29
-
-
41549136952
-
Design and pre-clinical evaluation of a universal HIV-1 vaccine
-
Létourneau S., Im E.-J., Mashishi T., Brereton C., Bridgeman A., Yang H., Dorrell L., Dong T., Korber B., McMichael A.J., Hanke T. Design and pre-clinical evaluation of a universal HIV-1 vaccine. PLoS ONE 2007, 2:e984.
-
(2007)
PLoS ONE
, vol.2
-
-
Létourneau, S.1
Im, E.-J.2
Mashishi, T.3
Brereton, C.4
Bridgeman, A.5
Yang, H.6
Dorrell, L.7
Dong, T.8
Korber, B.9
McMichael, A.J.10
Hanke, T.11
-
30
-
-
33645240933
-
Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1
-
Martinez-Picado J., Prado J.G., Fry E.E., Pfafferott K., Leslie A., Chetty S., Thobakgale C., Honeyborne I., Crawford H., Matthews P., et al. Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1. J. Virol. 2006, 80:3617-3623.
-
(2006)
J. Virol.
, vol.80
, pp. 3617-3623
-
-
Martinez-Picado, J.1
Prado, J.G.2
Fry, E.E.3
Pfafferott, K.4
Leslie, A.5
Chetty, S.6
Thobakgale, C.7
Honeyborne, I.8
Crawford, H.9
Matthews, P.10
-
31
-
-
66149101542
-
HLA footprints on human immunodeficiency virus type 1 are associated with interclade polymorphisms and intraclade phylogenetic clustering
-
Matthews P.C., Leslie A.J., Katzourakis A., Crawford H., Payne R., Prendergast A., Power K., Kelleher A.D., Klenerman P., Carlson J., et al. HLA footprints on human immunodeficiency virus type 1 are associated with interclade polymorphisms and intraclade phylogenetic clustering. J. Virol. 2009, 83:4605-4615.
-
(2009)
J. Virol.
, vol.83
, pp. 4605-4615
-
-
Matthews, P.C.1
Leslie, A.J.2
Katzourakis, A.3
Crawford, H.4
Payne, R.5
Prendergast, A.6
Power, K.7
Kelleher, A.D.8
Klenerman, P.9
Carlson, J.10
-
32
-
-
42549138499
-
Immunotherapy of established (pre)malignant disease by synthetic long peptide vaccines
-
Melief C.J.M., van der Burg S.H. Immunotherapy of established (pre)malignant disease by synthetic long peptide vaccines. Nat. Rev. Cancer 2008, 8:351-360.
-
(2008)
Nat. Rev. Cancer
, vol.8
, pp. 351-360
-
-
Melief, C.J.M.1
van der Burg, S.H.2
-
33
-
-
58149398654
-
HLA-associated alterations in replication capacity of chimeric NL4-3 viruses carrying gag-protease from elite controllers of human immunodeficiency virus type 1
-
Miura T., Brockman M.A., Brumme Z.L., Brumme C.J., Pereyra F., Trocha A., Block B.L., Schneidewind A., Allen T.M., Heckerman D., Walker B.D. HLA-associated alterations in replication capacity of chimeric NL4-3 viruses carrying gag-protease from elite controllers of human immunodeficiency virus type 1. J. Virol. 2009, 83:140-149.
-
(2009)
J. Virol.
, vol.83
, pp. 140-149
-
-
Miura, T.1
Brockman, M.A.2
Brumme, Z.L.3
Brumme, C.J.4
Pereyra, F.5
Trocha, A.6
Block, B.L.7
Schneidewind, A.8
Allen, T.M.9
Heckerman, D.10
Walker, B.D.11
-
34
-
-
62749177486
-
*5801 human immunodeficiency virus type 1 elite controllers select for rare gag variants associated with reduced viral replication capacity and strong cytotoxic T-lymphocyte recognition
-
*5801 human immunodeficiency virus type 1 elite controllers select for rare gag variants associated with reduced viral replication capacity and strong cytotoxic T-lymphocyte recognition. J. Virol. 2009, 83:2743-2755.
-
(2009)
J. Virol.
, vol.83
, pp. 2743-2755
-
-
Miura, T.1
Brockman, M.A.2
Schneidewind, A.3
Lobritz, M.4
Pereyra, F.5
Rathod, A.6
Block, B.L.7
Brumme, Z.L.8
Brumme, C.J.9
Baker, B.10
-
35
-
-
77954512323
-
Impaired replication capacity of acute/early viruses in persons who become HIV controllers
-
Miura T., Brumme Z.L., Brockman M.A., Rosato P., Sela J., Brumme C.J., Pereyra F., Kaufmann D.E., Trocha A., Block B.L., et al. Impaired replication capacity of acute/early viruses in persons who become HIV controllers. J. Virol. 2010, 84:7581-7591.
-
(2010)
J. Virol.
, vol.84
, pp. 7581-7591
-
-
Miura, T.1
Brumme, Z.L.2
Brockman, M.A.3
Rosato, P.4
Sela, J.5
Brumme, C.J.6
Pereyra, F.7
Kaufmann, D.E.8
Trocha, A.9
Block, B.L.10
-
36
-
-
79960975007
-
Are biological systems poised at criticality?
-
Mora T., Bialek W. Are biological systems poised at criticality?. J. Stat. Phys. 2011, 144:268-302.
-
(2011)
J. Stat. Phys.
, vol.144
, pp. 268-302
-
-
Mora, T.1
Bialek, W.2
-
37
-
-
77957195721
-
Efficacious early antiviral activity of HIV Gag- and Pol-specific HLA-B 2705-restricted CD8+ T cells
-
Payne R.P., Kløverpris H., Sacha J.B., Brumme Z., Brumme C., Buus S., Sims S., Hickling S., Riddell L., Chen F., et al. Efficacious early antiviral activity of HIV Gag- and Pol-specific HLA-B 2705-restricted CD8+ T cells. J. Virol. 2010, 84:10543-10557.
-
(2010)
J. Virol.
, vol.84
, pp. 10543-10557
-
-
Payne, R.P.1
Kløverpris, H.2
Sacha, J.B.3
Brumme, Z.4
Brumme, C.5
Buus, S.6
Sims, S.7
Hickling, S.8
Riddell, L.9
Chen, F.10
-
38
-
-
78650084232
-
The major genetic determinants of HIV-1 control affect HLA class I peptide presentation
-
International HIV Controllers Study
-
Pereyra F., Jia X., McLaren P.J., Telenti A., de Bakker P.I., Walker B.D., Ripke S., Brumme C.J., Pulit S.L., Carrington M., et al. The major genetic determinants of HIV-1 control affect HLA class I peptide presentation. Science 2010, 330:1551-1557. International HIV Controllers Study.
-
(2010)
Science
, vol.330
, pp. 1551-1557
-
-
Pereyra, F.1
Jia, X.2
McLaren, P.J.3
Telenti, A.4
de Bakker, P.I.5
Walker, B.D.6
Ripke, S.7
Brumme, C.J.8
Pulit, S.L.9
Carrington, M.10
-
39
-
-
84866173757
-
Memory CD8+ T cells specific for a single immunodominant or subdominant determinant induced by peptide-dendritic cell immunization protect from an acute lethal viral disease
-
Remakus S., Rubio D., Ma X., Sette A., Sigal L.J. Memory CD8+ T cells specific for a single immunodominant or subdominant determinant induced by peptide-dendritic cell immunization protect from an acute lethal viral disease. J. Virol. 2012, 86:9748-9759.
-
(2012)
J. Virol.
, vol.86
, pp. 9748-9759
-
-
Remakus, S.1
Rubio, D.2
Ma, X.3
Sette, A.4
Sigal, L.J.5
-
41
-
-
36048949732
-
Escape from the dominant HLA-B27-restricted cytotoxic T-lymphocyte response in Gag is associated with a dramatic reduction in human immunodeficiency virus type 1 replication
-
Schneidewind A., Brockman M.A., Yang R., Adam R.I., Li B., Le Gall S., Rinaldo C.R., Craggs S.L., Allgaier R.L., Power K.A., et al. Escape from the dominant HLA-B27-restricted cytotoxic T-lymphocyte response in Gag is associated with a dramatic reduction in human immunodeficiency virus type 1 replication. J. Virol. 2007, 81:12382-12393.
-
(2007)
J. Virol.
, vol.81
, pp. 12382-12393
-
-
Schneidewind, A.1
Brockman, M.A.2
Yang, R.3
Adam, R.I.4
Li, B.5
Le Gall, S.6
Rinaldo, C.R.7
Craggs, S.L.8
Allgaier, R.L.9
Power, K.A.10
-
42
-
-
43949094512
-
Structural and functional constraints limit options for cytotoxic T-lymphocyte escape in the immunodominant HLA-B27-restricted epitope in human immunodeficiency virus type 1 capsid
-
Schneidewind A., Brockman M.A., Sidney J., Wang Y.E., Chen H., Suscovich T.J., Li B., Adam R.I., Allgaier R.L., Mothé B.R., et al. Structural and functional constraints limit options for cytotoxic T-lymphocyte escape in the immunodominant HLA-B27-restricted epitope in human immunodeficiency virus type 1 capsid. J. Virol. 2008, 82:5594-5605.
-
(2008)
J. Virol.
, vol.82
, pp. 5594-5605
-
-
Schneidewind, A.1
Brockman, M.A.2
Sidney, J.3
Wang, Y.E.4
Chen, H.5
Suscovich, T.J.6
Li, B.7
Adam, R.I.8
Allgaier, R.L.9
Mothé, B.R.10
-
43
-
-
22144437325
-
The application of statistical physics to evolutionary biology
-
Sella G., Hirsh A.E. The application of statistical physics to evolutionary biology. Proc. Natl. Acad. Sci. USA 2005, 102:9541-9546.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 9541-9546
-
-
Sella, G.1
Hirsh, A.E.2
-
44
-
-
34447259551
-
Recognition of a defined region within p24 gag by CD8+ T cells during primary human immunodeficiency virus type 1 infection in individuals expressing protective HLA class I alleles
-
Streeck H., Lichterfeld M., Alter G., Meier A., Teigen N., Yassine-Diab B., Sidhu H.K., Little S., Kelleher A., Routy J.-P., et al. Recognition of a defined region within p24 gag by CD8+ T cells during primary human immunodeficiency virus type 1 infection in individuals expressing protective HLA class I alleles. J. Virol. 2007, 81:7725-7731.
-
(2007)
J. Virol.
, vol.81
, pp. 7725-7731
-
-
Streeck, H.1
Lichterfeld, M.2
Alter, G.3
Meier, A.4
Teigen, N.5
Yassine-Diab, B.6
Sidhu, H.K.7
Little, S.8
Kelleher, A.9
Routy, J.-P.10
-
45
-
-
67650924875
-
Human immunodeficiency virus type 1-specific CD8+ T-cell responses during primary infection are major determinants of the viral set point and loss of CD4+ T cells
-
Streeck H., Jolin J.S., Qi Y., Yassine-Diab B., Johnson R.C., Kwon D.S., Addo M.M., Brumme C., Routy J.P., Little S., et al. Human immunodeficiency virus type 1-specific CD8+ T-cell responses during primary infection are major determinants of the viral set point and loss of CD4+ T cells. J. Virol. 2009, 83:7641-7648.
-
(2009)
J. Virol.
, vol.83
, pp. 7641-7648
-
-
Streeck, H.1
Jolin, J.S.2
Qi, Y.3
Yassine-Diab, B.4
Johnson, R.C.5
Kwon, D.S.6
Addo, M.M.7
Brumme, C.8
Routy, J.P.9
Little, S.10
-
46
-
-
77950444572
-
-
Arxiv preprint arXiv:q-bio/0611072
-
Tkacik, G., Schneidman, E., Berry II, M. J. and Bialek, W. (2006). Ising models for networks of real neurons. Arxiv preprint arXiv:q-bio/0611072.
-
(2006)
Ising models for networks of real neurons
-
-
Tkacik, G.1
Schneidman, E.2
Berry II, M.J.3
Bialek, W.4
-
47
-
-
77950444572
-
-
Arxiv preprint arXiv:0912.5409
-
Tkacik, G., Schneidman, E., Berry, M.J., II, and Bialek, W. (2009). Spin glass models for a network of real neurons. Arxiv preprint arXiv:0912.5409.
-
(2009)
Spin glass models for a network of real neurons
-
-
Tkacik, G.1
Schneidman, E.2
Berry II, M.J.3
Bialek, W.4
-
48
-
-
1242348716
-
-
HIV Molecular Immunology, Los Alamos, New Mexico, USA
-
Trachtenberg E.A., Erlich H.A. A review of the role of the human leukocyte antigen (HLA) system as a host immunogenetic factor influencing HIV transmission and progression to AIDS 2001, HIV Molecular Immunology, Los Alamos, New Mexico, USA.
-
(2001)
A review of the role of the human leukocyte antigen (HLA) system as a host immunogenetic factor influencing HIV transmission and progression to AIDS
-
-
Trachtenberg, E.A.1
Erlich, H.A.2
-
49
-
-
84857959077
-
Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response
-
Troyer R.M., McNevin J., Liu Y., Zhang S.C., Krizan R.W., Abraha A., Tebit D.M., Zhao H., Avila S., Lobritz M.A., et al. Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response. PLoS Pathog. 2009, 5:e1000365.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Troyer, R.M.1
McNevin, J.2
Liu, Y.3
Zhang, S.C.4
Krizan, R.W.5
Abraha, A.6
Tebit, D.M.7
Zhao, H.8
Avila, S.9
Lobritz, M.A.10
-
50
-
-
80053132436
-
Broad neutralization coverage of HIV by multiple highly potent antibodies
-
Protocol G Principal Investigators
-
Walker L.M., Huber M., Doores K.J., Falkowska E., Pejchal R., Julien J.-P., Wang S.-K., Ramos A., Chan-Hui P.-Y., Moyle M., et al. Broad neutralization coverage of HIV by multiple highly potent antibodies. Nature 2011, 477:466-470. Protocol G Principal Investigators.
-
(2011)
Nature
, vol.477
, pp. 466-470
-
-
Walker, L.M.1
Huber, M.2
Doores, K.J.3
Falkowska, E.4
Pejchal, R.5
Julien, J.-P.6
Wang, S.-K.7
Ramos, A.8
Chan-Hui, P.-Y.9
Moyle, M.10
-
51
-
-
0000907353
-
-
In Proceedings of the Sixth International Congress of Genetics, Genetics Society of America.
-
Wright, S. (1932). The roles of mutation, inbreeding, crossbreeding, and selection in evolution. In Proceedings of the Sixth International Congress of Genetics vol. 1, pp. 356-366, Genetics Society of America.
-
(1932)
The roles of mutation, inbreeding, crossbreeding, and selection in evolution
, vol.1
, pp. 356-366
-
-
Wright, S.1
-
52
-
-
84857936999
-
*81-associated mutations in HIV-1 Gag on viral replication capacity
-
*81-associated mutations in HIV-1 Gag on viral replication capacity. J. Virol. 2012, 86:3193-3199.
-
(2012)
J. Virol.
, vol.86
, pp. 3193-3199
-
-
Wright, J.K.1
Naidoo, V.L.2
Brumme, Z.L.3
Prince, J.L.4
Claiborne, D.T.5
Goulder, P.J.6
Brockman, M.A.7
Hunter, E.8
Ndung'u, T.9
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