-
1
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob F, Monod J, (1961) Genetic regulatory mechanisms in the synthesis of proteins. J Mol Biol 3: 318-356.
-
(1961)
J Mol Biol
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
2
-
-
23144432213
-
Optimality and evolutionary tuning of the expression level of a protein
-
Dekel E, Alon U, (2005) Optimality and evolutionary tuning of the expression level of a protein. Nature 436: 588-592.
-
(2005)
Nature
, vol.436
, pp. 588-592
-
-
Dekel, E.1
Alon, U.2
-
4
-
-
79960958913
-
Nonlinear fitness landscape of a molecular pathway
-
Perfeito L, Ghozzi S, Berg J, Schnetz K, Lassig M, (2011) Nonlinear fitness landscape of a molecular pathway. PLoS Genet 7: e1002160.
-
(2011)
PLoS Genet
, vol.7
-
-
Perfeito, L.1
Ghozzi, S.2
Berg, J.3
Schnetz, K.4
Lassig, M.5
-
5
-
-
0033578424
-
Systematic changes in gene expression patterns following adaptive evolution in yeast
-
Ferea TL, Botstein D, Brown PO, Rosenzweig RF, (1999) Systematic changes in gene expression patterns following adaptive evolution in yeast. Proc Natl Acad Sci U S A 96: 9721-9726.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 9721-9726
-
-
Ferea, T.L.1
Botstein, D.2
Brown, P.O.3
Rosenzweig, R.F.4
-
6
-
-
65249100208
-
The cost of gene expression underlies a fitness trade-off in yeast
-
Lang GI, Murray AW, Botstein D, (2009) The cost of gene expression underlies a fitness trade-off in yeast. Proc Natl Acad Sci U S A 106: 5755-5760.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 5755-5760
-
-
Lang, G.I.1
Murray, A.W.2
Botstein, D.3
-
7
-
-
77649219156
-
Minimization of biosynthetic costs in adaptive gene expression responses of yeast to environmental changes
-
Vilaprinyo E, Alves R, Sorribas A, (2009) Minimization of biosynthetic costs in adaptive gene expression responses of yeast to environmental changes. PLoS Comput Biol 6: e1000674.
-
(2009)
PLoS Comput Biol
, vol.6
-
-
Vilaprinyo, E.1
Alves, R.2
Sorribas, A.3
-
8
-
-
0037213715
-
Gene expression and the myth of the average cell
-
Levsky JM, Singer RH, (2003) Gene expression and the myth of the average cell. Trends Cell Biol 13: 4-6.
-
(2003)
Trends Cell Biol
, vol.13
, pp. 4-6
-
-
Levsky, J.M.1
Singer, R.H.2
-
9
-
-
0001389945
-
Enzyme induction as an all-or-none phenomenon
-
Novick A, Weiner M, (1957) Enzyme induction as an all-or-none phenomenon. Proc Natl Acad Sci USA 43: 553-566.
-
(1957)
Proc Natl Acad Sci USA
, vol.43
, pp. 553-566
-
-
Novick, A.1
Weiner, M.2
-
10
-
-
33745220278
-
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
-
Newman JR, Ghaemmaghami S, Ihmels J, Breslow DK, Noble M, et al. (2006) Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 441: 840-846.
-
(2006)
Nature
, vol.441
, pp. 840-846
-
-
Newman, J.R.1
Ghaemmaghami, S.2
Ihmels, J.3
Breslow, D.K.4
Noble, M.5
-
11
-
-
77955102352
-
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, et al. (2010) Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329: 533-538.
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
-
12
-
-
41949116255
-
Bet-hedging and epigenetic inheritance in bacterial cell development
-
Veening JW, Stewart EJ, Berngruber TW, Taddei F, Kuipers OP, et al. (2008) Bet-hedging and epigenetic inheritance in bacterial cell development. Proc Natl Acad Sci U S A 105: 4393-4398.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4393-4398
-
-
Veening, J.W.1
Stewart, E.J.2
Berngruber, T.W.3
Taddei, F.4
Kuipers, O.P.5
-
13
-
-
57349097152
-
Dynamic proteomics of individual cancer cells in response to a drug
-
Cohen AA, Geva-Zatorsky N, Eden E, Frenkel-Morgenstern M, Issaeva I, et al. (2008) Dynamic proteomics of individual cancer cells in response to a drug. Science 322: 1511-1516.
-
(2008)
Science
, vol.322
, pp. 1511-1516
-
-
Cohen, A.A.1
Geva-Zatorsky, N.2
Eden, E.3
Frenkel-Morgenstern, M.4
Issaeva, I.5
-
14
-
-
0242416539
-
Noise in eukaryotic gene expression
-
Blake WJ, Kaern M, Cantor CR, Collins JJ, (2003) Noise in eukaryotic gene expression. Nature 422: 633-637.
-
(2003)
Nature
, vol.422
, pp. 633-637
-
-
Blake, W.J.1
Kaern, M.2
Cantor, C.R.3
Collins, J.J.4
-
15
-
-
0037119587
-
Stochastic gene expression in a single cell
-
Elowitz MB, Levine AJ, Siggia ED, Swain PS, (2002) Stochastic gene expression in a single cell. Science 297: 1183-1186.
-
(2002)
Science
, vol.297
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
16
-
-
0031029852
-
Stochastic mechanisms in gene expression
-
McAdams HH, Arkin A, (1997) Stochastic mechanisms in gene expression. Proc Natl Acad Sci USA 94: 814-819.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 814-819
-
-
McAdams, H.H.1
Arkin, A.2
-
17
-
-
0036578645
-
Regulation of noise in the expression of a single gene
-
Ozbudak EM, Thattai M, Kurtser I, Grossman AD, van Oudenaarden A, (2002) Regulation of noise in the expression of a single gene. Nat Genet 31: 69-73.
-
(2002)
Nat Genet
, vol.31
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
van Oudenaarden, A.5
-
18
-
-
2942718723
-
Control of stochasticity in eukaryotic gene expression
-
Raser JM, O'Shea EK, (2004) Control of stochasticity in eukaryotic gene expression. Science 304: 1811-1814.
-
(2004)
Science
, vol.304
, pp. 1811-1814
-
-
Raser, J.M.1
O'Shea, E.K.2
-
19
-
-
57149101122
-
Single-RNA counting reveals alternative modes of gene expression in yeast
-
Zenklusen D, Larson DR, Singer RH, (2008) Single-RNA counting reveals alternative modes of gene expression in yeast. Nat Struct Mol Biol 15: 1263-1271.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 1263-1271
-
-
Zenklusen, D.1
Larson, D.R.2
Singer, R.H.3
-
20
-
-
60649091920
-
Synthetic control of a fitness tradeoff in yeast nitrogen metabolism
-
Bayer TS, Hoff KG, Beisel CL, Lee JJ, Smolke CD, (2009) Synthetic control of a fitness tradeoff in yeast nitrogen metabolism. J Biol Eng 3: 1.
-
(2009)
J Biol Eng
, vol.3
, pp. 1
-
-
Bayer, T.S.1
Hoff, K.G.2
Beisel, C.L.3
Lee, J.J.4
Smolke, C.D.5
-
21
-
-
33845616177
-
Phenotypic consequences of promoter-mediated transcriptional noise
-
Blake WJ, Balázsi G, Kohanski MA, Isaacs FJ, Murphy KF, et al. (2006) Phenotypic consequences of promoter-mediated transcriptional noise. Mol Cell 24: 853-865.
-
(2006)
Mol Cell
, vol.24
, pp. 853-865
-
-
Blake, W.J.1
Balázsi, G.2
Kohanski, M.A.3
Isaacs, F.J.4
Murphy, K.F.5
-
22
-
-
35448953506
-
Glutathione and Gts1p drive beneficial variability in the cadmium resistances of individual yeast cells
-
Smith MC, Sumner ER, Avery SV, (2007) Glutathione and Gts1p drive beneficial variability in the cadmium resistances of individual yeast cells. Mol Microbiol 66: 699-712.
-
(2007)
Mol Microbiol
, vol.66
, pp. 699-712
-
-
Smith, M.C.1
Sumner, E.R.2
Avery, S.V.3
-
23
-
-
18744361871
-
Enhancement of cellular memory by reducing stochastic transitions
-
Acar M, Becskei A, van OA, (2005) Enhancement of cellular memory by reducing stochastic transitions. Nature 435: 228-232.
-
(2005)
Nature
, vol.435
, pp. 228-232
-
-
Acar, M.1
Becskei, A.2
van, O.A.3
-
24
-
-
79952638264
-
Cellular decision making and biological noise: from microbes to mammals
-
Balázsi G, van Oudenaarden A, Collins JJ, (2011) Cellular decision making and biological noise: from microbes to mammals. Cell 144: 910-925.
-
(2011)
Cell
, vol.144
, pp. 910-925
-
-
Balázsi, G.1
van Oudenaarden, A.2
Collins, J.J.3
-
25
-
-
77956520011
-
Functional roles for noise in genetic circuits
-
Eldar A, Elowitz MB, (2010) Functional roles for noise in genetic circuits. Nature 467: 167-173.
-
(2010)
Nature
, vol.467
, pp. 167-173
-
-
Eldar, A.1
Elowitz, M.B.2
-
26
-
-
53549123008
-
Nature, nurture, or chance: stochastic gene expression and its consequences
-
Raj A, van Oudenaarden A, (2008) Nature, nurture, or chance: stochastic gene expression and its consequences. Cell 135: 216-226.
-
(2008)
Cell
, vol.135
, pp. 216-226
-
-
Raj, A.1
van Oudenaarden, A.2
-
27
-
-
33847394655
-
MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast
-
Paliwal S, Iglesias PA, Campbell K, Hilioti Z, Groisman A, et al. (2007) MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast. Nature 446: 46-51.
-
(2007)
Nature
, vol.446
, pp. 46-51
-
-
Paliwal, S.1
Iglesias, P.A.2
Campbell, K.3
Hilioti, Z.4
Groisman, A.5
-
28
-
-
34548856538
-
Rational design of memory in eukaryotic cells
-
Ajo-Franklin CM, Drubin DA, Eskin JA, Gee EP, Landgraf D, et al. (2007) Rational design of memory in eukaryotic cells. Genes Dev 21: 2271-2276.
-
(2007)
Genes Dev
, vol.21
, pp. 2271-2276
-
-
Ajo-Franklin, C.M.1
Drubin, D.A.2
Eskin, J.A.3
Gee, E.P.4
Landgraf, D.5
-
29
-
-
17144456808
-
Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion
-
Becskei A, Seraphin B, Serrano L, (2001) Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. Embo J 20: 2528-2535.
-
(2001)
Embo J
, vol.20
, pp. 2528-2535
-
-
Becskei, A.1
Seraphin, B.2
Serrano, L.3
-
30
-
-
66149172363
-
Diversity-based, model-guided construction of synthetic gene networks with predicted functions
-
Ellis T, Wang X, Collins JJ, (2009) Diversity-based, model-guided construction of synthetic gene networks with predicted functions. Nat Biotechnol 27: 465-471.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 465-471
-
-
Ellis, T.1
Wang, X.2
Collins, J.J.3
-
31
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
Gardner TS, Cantor CR, Collins JJ, (2000) Construction of a genetic toggle switch in Escherichia coli. Nature 403: 339-342.
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
32
-
-
48649104164
-
Bimodal and hysteretic expression in mammalian cells from a synthetic gene circuit
-
May T, Eccleston L, Herrmann S, Hauser H, Goncalves J, et al. (2008) Bimodal and hysteretic expression in mammalian cells from a synthetic gene circuit. PLoS One 3: e2372.
-
(2008)
PLoS One
, vol.3
-
-
May, T.1
Eccleston, L.2
Herrmann, S.3
Hauser, H.4
Goncalves, J.5
-
33
-
-
0038271880
-
Prediction and measurement of an autoregulatory genetic module
-
Isaacs FJ, Hasty J, Cantor CR, Collins JJ, (2003) Prediction and measurement of an autoregulatory genetic module. Proc Natl Acad Sci U S A 100: 7714-7719.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 7714-7719
-
-
Isaacs, F.J.1
Hasty, J.2
Cantor, C.R.3
Collins, J.J.4
-
34
-
-
0033826788
-
Daniel Bernoulli (1738): evolution and economics under risk
-
Stearns SC, (2000) Daniel Bernoulli (1738): evolution and economics under risk. J Biosci 25: 221-228.
-
(2000)
J Biosci
, vol.25
, pp. 221-228
-
-
Stearns, S.C.1
-
35
-
-
53849146767
-
Bistability, epigenetics, and bet-hedging in bacteria
-
Veening JW, Smits WK, Kuipers OP, (2008) Bistability, epigenetics, and bet-hedging in bacteria. Annu Rev Microbiol 62: 193-210.
-
(2008)
Annu Rev Microbiol
, vol.62
, pp. 193-210
-
-
Veening, J.W.1
Smits, W.K.2
Kuipers, O.P.3
-
36
-
-
79951552049
-
Bet hedging or not? A guide to proper classification of microbial survival strategies
-
de Jong IG, Haccou P, Kuipers OP, (2011) Bet hedging or not? A guide to proper classification of microbial survival strategies. Bioessays 33: 215-223.
-
(2011)
Bioessays
, vol.33
, pp. 215-223
-
-
de Jong, I.G.1
Haccou, P.2
Kuipers, O.P.3
-
37
-
-
2942555282
-
Stochastic gene expression in fluctuating environments
-
Thattai M, van Oudenaarden A, (2004) Stochastic gene expression in fluctuating environments. Genetics 167: 523-530.
-
(2004)
Genetics
, vol.167
, pp. 523-530
-
-
Thattai, M.1
van Oudenaarden, A.2
-
38
-
-
14744282987
-
Diversity in times of adversity: probabilistic strategies in microbial survival games
-
Wolf DM, Vazirani VV, Arkin AP, (2005) Diversity in times of adversity: probabilistic strategies in microbial survival games. J Theor Biol 234: 227-253.
-
(2005)
J Theor Biol
, vol.234
, pp. 227-253
-
-
Wolf, D.M.1
Vazirani, V.V.2
Arkin, A.P.3
-
39
-
-
25444489027
-
Phenotypic diversity, population growth, and information in fluctuating environments
-
Kussell E, Leibler S, (2005) Phenotypic diversity, population growth, and information in fluctuating environments. Science 309: 2075-2078.
-
(2005)
Science
, vol.309
, pp. 2075-2078
-
-
Kussell, E.1
Leibler, S.2
-
40
-
-
41349119880
-
Stochastic switching as a survival strategy in fluctuating environments
-
Acar M, Mettetal JT, van Oudenaarden A, (2008) Stochastic switching as a survival strategy in fluctuating environments. Nat Genet 40: 471-475.
-
(2008)
Nat Genet
, vol.40
, pp. 471-475
-
-
Acar, M.1
Mettetal, J.T.2
van Oudenaarden, A.3
-
41
-
-
70350336588
-
Architecture-dependent noise discriminates functionally analogous differentiation circuits
-
Çaǧatay T, Turcotte M, Elowitz MB, Garcia-Ojalvo J, Suel GM, (2009) Architecture-dependent noise discriminates functionally analogous differentiation circuits. Cell 139: 512-522.
-
(2009)
Cell
, vol.139
, pp. 512-522
-
-
Çaǧatay, T.1
Turcotte, M.2
Elowitz, M.B.3
Garcia-Ojalvo, J.4
Suel, G.M.5
-
42
-
-
62549083590
-
Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression
-
Nevozhay D, Adams RM, Murphy KF, Josic K, Balázsi G, (2009) Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression. Proc Natl Acad Sci U S A 106: 5123-5128.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 5123-5128
-
-
Nevozhay, D.1
Adams, R.M.2
Murphy, K.F.3
Josic, K.4
Balázsi, G.5
-
43
-
-
0034608802
-
Exploring the sequence space for tetracycline-dependent transcriptional activators: novel mutations yield expanded range and sensitivity
-
Urlinger S, Baron U, Thellmann M, Hasan MT, Bujard H, et al. (2000) Exploring the sequence space for tetracycline-dependent transcriptional activators: novel mutations yield expanded range and sensitivity. Proc Natl Acad Sci USA 97: 7963-7968.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 7963-7968
-
-
Urlinger, S.1
Baron, U.2
Thellmann, M.3
Hasan, M.T.4
Bujard, H.5
-
44
-
-
72249097352
-
Growth rate-dependent global effects on gene expression in bacteria
-
Klumpp S, Zhang Z, Hwa T, (2009) Growth rate-dependent global effects on gene expression in bacteria. Cell 139: 1366-1375.
-
(2009)
Cell
, vol.139
, pp. 1366-1375
-
-
Klumpp, S.1
Zhang, Z.2
Hwa, T.3
-
45
-
-
70350324632
-
Emergent bistability by a growth-modulating positive feedback circuit
-
Tan C, Marguet P, You L, (2009) Emergent bistability by a growth-modulating positive feedback circuit. Nat Chem Biol 5: 842-848.
-
(2009)
Nat Chem Biol
, vol.5
, pp. 842-848
-
-
Tan, C.1
Marguet, P.2
You, L.3
-
46
-
-
77952492425
-
Tuning and controlling gene expression noise in synthetic gene networks
-
Murphy KF, Adams RM, Wang X, Balázsi G, Collins JJ, (2010) Tuning and controlling gene expression noise in synthetic gene networks. Nucleic Acids Res 38: 2712-2726.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 2712-2726
-
-
Murphy, K.F.1
Adams, R.M.2
Wang, X.3
Balázsi, G.4
Collins, J.J.5
-
49
-
-
0004079429
-
-
Princeton, New Jersey, Princeton University Press
-
Michod RE, (2000) Darwinian Dynamics Princeton, New Jersey Princeton University Press.
-
(2000)
Darwinian Dynamics
-
-
Michod, R.E.1
-
50
-
-
67651119869
-
Fitness and its role in evolutionary genetics
-
Orr HA, (2009) Fitness and its role in evolutionary genetics. Nat Rev Genet 10: 531-539.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 531-539
-
-
Orr, H.A.1
-
51
-
-
0028365256
-
Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations
-
Lenski RE, Travisano M, (1994) Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations. Proc Natl Acad Sci U S A 91: 6808-6814.
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, pp. 6808-6814
-
-
Lenski, R.E.1
Travisano, M.2
-
52
-
-
25844495901
-
Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
-
Fong SS, Joyce AR, Palsson BO, (2005) Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states. Genome Res 15: 1365-1372.
-
(2005)
Genome Res
, vol.15
, pp. 1365-1372
-
-
Fong, S.S.1
Joyce, A.R.2
Palsson, B.O.3
-
53
-
-
0023500411
-
Population Growth Rate and the Measurement of Fitness: A Critical Reflection
-
Nur N, (1987) Population Growth Rate and the Measurement of Fitness: A Critical Reflection. Oikos 48: 338-341.
-
(1987)
Oikos
, vol.48
, pp. 338-341
-
-
Nur, N.1
-
54
-
-
69249106061
-
Positive selection for elevated gene expression noise in yeast
-
Zhang Z, Qian W, Zhang J, (2009) Positive selection for elevated gene expression noise in yeast. Mol Syst Biol 5: 299.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 299
-
-
Zhang, Z.1
Qian, W.2
Zhang, J.3
-
55
-
-
0020398451
-
The Theory of Kin Selection
-
Michod R, (1982) The Theory of Kin Selection. Annu Rev Ecol Syst 13: 23-55.
-
(1982)
Annu Rev Ecol Syst
, vol.13
, pp. 23-55
-
-
Michod, R.1
-
56
-
-
64849114915
-
Coding-sequence determinants of gene expression in Escherichia coli
-
Kudla G, Murray AW, Tollervey D, Plotkin JB, (2009) Coding-sequence determinants of gene expression in Escherichia coli. Science 324: 255-258.
-
(2009)
Science
, vol.324
, pp. 255-258
-
-
Kudla, G.1
Murray, A.W.2
Tollervey, D.3
Plotkin, J.B.4
-
57
-
-
78449268845
-
Interdependence of cell growth and gene expression: origins and consequences
-
Scott M, Gunderson CW, Mateescu EM, Zhang Z, Hwa T, (2010) Interdependence of cell growth and gene expression: origins and consequences. Science 330: 1099-1102.
-
(2010)
Science
, vol.330
, pp. 1099-1102
-
-
Scott, M.1
Gunderson, C.W.2
Mateescu, E.M.3
Zhang, Z.4
Hwa, T.5
-
58
-
-
0030797223
-
Tetracycline-controlled transcription in eukaryotes: novel transactivators with graded transactivation potential
-
Baron U, Gossen M, Bujard H, (1997) Tetracycline-controlled transcription in eukaryotes: novel transactivators with graded transactivation potential. Nucleic Acids Res 25: 2723-2729.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 2723-2729
-
-
Baron, U.1
Gossen, M.2
Bujard, H.3
-
59
-
-
65649124513
-
Drug interactions and the evolution of antibiotic resistance
-
Yeh PJ, Hegreness MJ, Aiden AP, Kishony R, (2009) Drug interactions and the evolution of antibiotic resistance. Nat Rev Microbiol 7: 460-466.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 460-466
-
-
Yeh, P.J.1
Hegreness, M.J.2
Aiden, A.P.3
Kishony, R.4
-
60
-
-
81155123590
-
Gene expression noise facilitates adaptation and drug resistance independently of mutation
-
Charlebois DA, Abdennur N, Kaern M, (2011) Gene expression noise facilitates adaptation and drug resistance independently of mutation. Phys Rev Lett 107: 218101.
-
(2011)
Phys Rev Lett
, vol.107
, pp. 218101
-
-
Charlebois, D.A.1
Abdennur, N.2
Kaern, M.3
-
61
-
-
71849086969
-
Cell population balance, ensemble and continuum modeling frameworks: Conditional equivalence and hybrid approaches
-
Stamatakis M, (2010) Cell population balance, ensemble and continuum modeling frameworks: Conditional equivalence and hybrid approaches. Chem Eng Sci 65: 1008-1015.
-
(2010)
Chem Eng Sci
, vol.65
, pp. 1008-1015
-
-
Stamatakis, M.1
-
65
-
-
84898965048
-
Stability and noise in biochemical switches
-
In: Leen T, Dietterich T, Tresp V, editors, Cambridge, Massachusetts, MIT Press
-
Bialek W, (2001) Stability and noise in biochemical switches. In: Leen T, Dietterich T, Tresp V, editors. Advances in Neural Information Processing Systems 13 Cambridge, Massachusetts MIT Press pp. 103-109.
-
(2001)
Advances in Neural Information Processing Systems
, vol.13
, pp. 103-109
-
-
Bialek, W.1
-
66
-
-
0035193294
-
Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations
-
Kepler TB, Elston TC, (2001) Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. Biophys J 81: 3116-3136.
-
(2001)
Biophys J
, vol.81
, pp. 3116-3136
-
-
Kepler, T.B.1
Elston, T.C.2
-
67
-
-
50649120833
-
Metabolic gene regulation in a dynamically changing environment
-
Bennett MR, Pang WL, Ostroff NA, Baumgartner BL, Nayak S, et al. (2008) Metabolic gene regulation in a dynamically changing environment. Nature 454: 1119-1122.
-
(2008)
Nature
, vol.454
, pp. 1119-1122
-
-
Bennett, M.R.1
Pang, W.L.2
Ostroff, N.A.3
Baumgartner, B.L.4
Nayak, S.5
-
69
-
-
66249088017
-
The second wave of synthetic biology: from modules to systems
-
Purnick PE, Weiss R, (2009) The second wave of synthetic biology: from modules to systems. Nat Rev Mol Cell Biol 10: 410-422.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, pp. 410-422
-
-
Purnick, P.E.1
Weiss, R.2
-
70
-
-
80054937073
-
From DNA to targeted therapeutics: bringing synthetic biology to the clinic
-
Chen YY, Smolke CD, (2011) From DNA to targeted therapeutics: bringing synthetic biology to the clinic. Sci Transl Med 3: 106ps142.
-
(2011)
Sci Transl Med
, vol.3
-
-
Chen, Y.Y.1
Smolke, C.D.2
-
71
-
-
80052493200
-
Synthetic biology: integrated gene circuits
-
Nandagopal N, Elowitz MB, (2011) Synthetic biology: integrated gene circuits. Science 333: 1244-1248.
-
(2011)
Science
, vol.333
, pp. 1244-1248
-
-
Nandagopal, N.1
Elowitz, M.B.2
-
72
-
-
80053132391
-
Synthetic chromosome arms function in yeast and generate phenotypic diversity by design
-
Dymond JS, Richardson SM, Coombes CE, Babatz T, Muller H, et al. (2011) Synthetic chromosome arms function in yeast and generate phenotypic diversity by design. Nature 477: 471-476.
-
(2011)
Nature
, vol.477
, pp. 471-476
-
-
Dymond, J.S.1
Richardson, S.M.2
Coombes, C.E.3
Babatz, T.4
Muller, H.5
-
73
-
-
4644343922
-
Bacterial persistence as a phenotypic switch
-
Balaban NQ, Merrin J, Chait R, Kowalik L, Leibler S, (2004) Bacterial persistence as a phenotypic switch. Science 305: 1622-1625.
-
(2004)
Science
, vol.305
, pp. 1622-1625
-
-
Balaban, N.Q.1
Merrin, J.2
Chait, R.3
Kowalik, L.4
Leibler, S.5
-
74
-
-
49449090300
-
Using noise to probe and characterize gene circuits
-
Cox CD, McCollum JM, Allen MS, Dar RD, Simpson ML, (2008) Using noise to probe and characterize gene circuits. Proc Natl Acad Sci U S A 105: 10809-10814.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 10809-10814
-
-
Cox, C.D.1
McCollum, J.M.2
Allen, M.S.3
Dar, R.D.4
Simpson, M.L.5
-
75
-
-
0000907353
-
The roles of mutation, inbreeding, crossbreeding and selection in evolution
-
Wright S, (1932) The roles of mutation, inbreeding, crossbreeding and selection in evolution. Proceedings of the 6th International Congress of Genetics 1: 356-366.
-
(1932)
Proceedings of the 6th International Congress of Genetics
, vol.1
, pp. 356-366
-
-
Wright, S.1
-
76
-
-
68049107038
-
Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution
-
Jablonka E, Raz G, (2009) Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution. Q Rev Biol 84: 131-176.
-
(2009)
Q Rev Biol
, vol.84
, pp. 131-176
-
-
Jablonka, E.1
Raz, G.2
-
77
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB, (2005) Gene regulation at the single-cell level. Science 307: 1962-1965.
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
78
-
-
0344994508
-
Epigenetic inheritance, genetic assimilation and speciation
-
Pál C, Miklós I, (1999) Epigenetic inheritance, genetic assimilation and speciation. J Theor Biol 200: 19-37.
-
(1999)
J Theor Biol
, vol.200
, pp. 19-37
-
-
Pál, C.1
Miklós, I.2
-
79
-
-
63449102873
-
Bacterial toxin-antitoxin systems: more than selfish entities?
-
Van Melderen L, Saavedra De Bast M, (2009) Bacterial toxin-antitoxin systems: more than selfish entities? PLoS Genet 5: e1000437.
-
(2009)
PLoS Genet
, vol.5
-
-
van Melderen, L.1
Saavedra de Bast, M.2
-
80
-
-
77955452979
-
Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence
-
Rotem E, Loinger A, Ronin I, Levin-Reisman I, Gabay C, et al. (2010) Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence. Proc Natl Acad Sci U S A 107: 12541-12546.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 12541-12546
-
-
Rotem, E.1
Loinger, A.2
Ronin, I.3
Levin-Reisman, I.4
Gabay, C.5
-
81
-
-
0024371160
-
Effects of carriage and expression of the Tn10 tetracycline-resistance operon on the fitness of Escherichia coli K12
-
Nguyen TN, Phan QG, Duong LP, Bertrand KP, Lenski RE, (1989) Effects of carriage and expression of the Tn10 tetracycline-resistance operon on the fitness of Escherichia coli K12. Mol Biol Evol 6: 213-225.
-
(1989)
Mol Biol Evol
, vol.6
, pp. 213-225
-
-
Nguyen, T.N.1
Phan, Q.G.2
Duong, L.P.3
Bertrand, K.P.4
Lenski, R.E.5
-
82
-
-
80054756690
-
Non-transcriptional regulatory processes shape transcriptional network dynamics
-
Ray JC, Tabor JJ, Igoshin OA, (2011) Non-transcriptional regulatory processes shape transcriptional network dynamics. Nat Rev Microbiol 9: 817-828.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 817-828
-
-
Ray, J.C.1
Tabor, J.J.2
Igoshin, O.A.3
-
83
-
-
79955886933
-
Metabolite-enabled eradication of bacterial persisters by aminoglycosides
-
Allison KR, Brynildsen MP, Collins JJ, (2011) Metabolite-enabled eradication of bacterial persisters by aminoglycosides. Nature 473: 216-220.
-
(2011)
Nature
, vol.473
, pp. 216-220
-
-
Allison, K.R.1
Brynildsen, M.P.2
Collins, J.J.3
-
84
-
-
77950809059
-
A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations
-
Sharma SV, Lee DY, Li B, Quinlan MP, Takahashi F, et al. (2010) A chromatin-mediated reversible drug-tolerant state in cancer cell subpopulations. Cell 141: 69-80.
-
(2010)
Cell
, vol.141
, pp. 69-80
-
-
Sharma, S.V.1
Lee, D.Y.2
Li, B.3
Quinlan, M.P.4
Takahashi, F.5
-
85
-
-
34447505900
-
A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells
-
Deans TL, Cantor CR, Collins JJ, (2007) A tunable genetic switch based on RNAi and repressor proteins for regulating gene expression in mammalian cells. Cell 130: 363-372.
-
(2007)
Cell
, vol.130
, pp. 363-372
-
-
Deans, T.L.1
Cantor, C.R.2
Collins, J.J.3
-
86
-
-
80052484996
-
Synthetic biology moving into the clinic
-
Ruder WC, Lu T, Collins JJ, (2011) Synthetic biology moving into the clinic. Science 333: 1248-1252.
-
(2011)
Science
, vol.333
, pp. 1248-1252
-
-
Ruder, W.C.1
Lu, T.2
Collins, J.J.3
-
87
-
-
77954920911
-
Engineered bacterial communication prevents Vibrio cholerae virulence in an infant mouse model
-
Duan F, March JC, (2010) Engineered bacterial communication prevents Vibrio cholerae virulence in an infant mouse model. Proc Natl Acad Sci U S A 107: 11260-11264.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 11260-11264
-
-
Duan, F.1
March, J.C.2
-
88
-
-
35348968286
-
The human microbiome project
-
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, et al. (2007) The human microbiome project. Nature 449: 804-810.
-
(2007)
Nature
, vol.449
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
-
89
-
-
37549002155
-
Nanog safeguards pluripotency and mediates germline development
-
Chambers I, Silva J, Colby D, Nichols J, Nijmeijer B, et al. (2007) Nanog safeguards pluripotency and mediates germline development. Nature 450: 1230-1234.
-
(2007)
Nature
, vol.450
, pp. 1230-1234
-
-
Chambers, I.1
Silva, J.2
Colby, D.3
Nichols, J.4
Nijmeijer, B.5
-
90
-
-
44349162752
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
-
Chang HH, Hemberg M, Barahona M, Ingber DE, Huang S, (2008) Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature 453: 544-547.
-
(2008)
Nature
, vol.453
, pp. 544-547
-
-
Chang, H.H.1
Hemberg, M.2
Barahona, M.3
Ingber, D.E.4
Huang, S.5
-
91
-
-
67349183976
-
Metastable pluripotent states in NOD-mouse-derived ESCs
-
Hanna J, Markoulaki S, Mitalipova M, Cheng AW, Cassady JP, et al. (2009) Metastable pluripotent states in NOD-mouse-derived ESCs. Cell Stem Cell 4: 513-524.
-
(2009)
Cell Stem Cell
, vol.4
, pp. 513-524
-
-
Hanna, J.1
Markoulaki, S.2
Mitalipova, M.3
Cheng, A.W.4
Cassady, J.P.5
-
92
-
-
68049139696
-
Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells
-
Kalmar T, Lim C, Hayward P, Munoz-Descalzo S, Nichols J, et al. (2009) Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells. PLoS Biol 7: e1000149.
-
(2009)
PLoS Biol
, vol.7
-
-
Kalmar, T.1
Lim, C.2
Hayward, P.3
Munoz-Descalzo, S.4
Nichols, J.5
-
93
-
-
25144450143
-
Contributions of low molecule number and chromosomal positioning to stochastic gene expression
-
Becskei A, Kaufmann BB, van Oudenaarden A, (2005) Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nat Genet 37: 937-944.
-
(2005)
Nat Genet
, vol.37
, pp. 937-944
-
-
Becskei, A.1
Kaufmann, B.B.2
van Oudenaarden, A.3
-
94
-
-
0028954118
-
Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure
-
Gietz RD, Schiestl RH, Willems AR, Woods RA, (1995) Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure. Yeast 11: 355-360.
-
(1995)
Yeast
, vol.11
, pp. 355-360
-
-
Gietz, R.D.1
Schiestl, R.H.2
Willems, A.R.3
Woods, R.A.4
-
95
-
-
0022611431
-
Graphical presentation of multidimensional flow histogram using hexagonal segmentation
-
Kosugi Y, Ikebe J, Shitara N, Takakura K, (1986) Graphical presentation of multidimensional flow histogram using hexagonal segmentation. Cytometry 7: 291-294.
-
(1986)
Cytometry
, vol.7
, pp. 291-294
-
-
Kosugi, Y.1
Ikebe, J.2
Shitara, N.3
Takakura, K.4
|