메뉴 건너뛰기




Volumn 25, Issue 1, 2016, Pages 287-305

Shared and nonshared genomic divergence in parallel ecotypes of Littorina saxatilis at a local scale

Author keywords

genome scan; marine snail; null alleles; parallel phenotypic evolution; RAD sequencing; shared genomic divergence

Indexed keywords

ALLELE; ANIMAL; CONTIG MAPPING; DNA SEQUENCE; ECOTYPE; GENE FLOW; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENETIC SELECTION; GENETICS; HAPLOTYPE; ISLAND (GEOLOGICAL); PHENOTYPE; POPULATION GENETICS; SNAIL; SPECIES DIFFERENTIATION; SWEDEN;

EID: 84954077915     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/mec.13332     Document Type: Review
Times cited : (109)

References (98)
  • 2
    • 84878449439 scopus 로고    scopus 로고
    • RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling
    • Arnold B, Corbett-Detig RB, Hartl D, Bomblies K, (2013) RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling. Molecular Ecology, 22, 3179-3190
    • (2013) Molecular Ecology , vol.22 , pp. 3179-3190
    • Arnold, B.1    Corbett-Detig, R.B.2    Hartl, D.3    Bomblies, K.4
  • 3
    • 54449098752 scopus 로고    scopus 로고
    • Rapid SNP discovery and genetic mapping using sequenced RAD markers
    • Baird NA, Etter PD, Atwood TS, et al. (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One, 3, e3376
    • (2008) PLoS One , vol.3 , pp. e3376
    • Baird, N.A.1    Etter, P.D.2    Atwood, T.S.3
  • 4
    • 80054759105 scopus 로고    scopus 로고
    • Molecular spandrels: Tests of adaptation at the genetic level
    • Barrett RDH, Hoekstra HE, (2011) Molecular spandrels: tests of adaptation at the genetic level. Nature Reviews Genetics, 12, 767-780
    • (2011) Nature Reviews Genetics , vol.12 , pp. 767-780
    • Barrett, R.D.H.1    Hoekstra, H.E.2
  • 6
    • 79955609628 scopus 로고    scopus 로고
    • Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism
    • Baxter SW, Davey JW, Johnston JS, et al. (2011) Linkage mapping and comparative genomics using next-generation RAD sequencing of a non-model organism. PLoS One, 6, e19315
    • (2011) PLoS One , vol.6 , pp. e19315
    • Baxter, S.W.1    Davey, J.W.2    Johnston, J.S.3
  • 10
    • 84898057945 scopus 로고    scopus 로고
    • Parallel evolution of local adaptation and reproductive isolation in the face of gene flow
    • Butlin RK, Saura M, Charrier G, et al. (2014) Parallel evolution of local adaptation and reproductive isolation in the face of gene flow. Evolution, 68, 935-949
    • (2014) Evolution , vol.68 , pp. 935-949
    • Butlin, R.K.1    Saura, M.2    Charrier, G.3
  • 11
    • 27144549279 scopus 로고    scopus 로고
    • Decomposing shell form into size and shape by geometric morphometric methods in two sympatric ecotypes of Littorina saxatilis
    • Carvajal-Rodriguez A, Conde-Padin P, Rolan-Alvarez E, (2005) Decomposing shell form into size and shape by geometric morphometric methods in two sympatric ecotypes of Littorina saxatilis. Journal of Molluscan Studies, 71, 313-318
    • (2005) Journal of Molluscan Studies , vol.71 , pp. 313-318
    • Carvajal-Rodriguez, A.1    Conde-Padin, P.2    Rolan-Alvarez, E.3
  • 12
    • 84884299558 scopus 로고    scopus 로고
    • Stacks: Building and genotyping loci de novo from short-read sequences
    • Catchen JM, Amores A, Hohenlohe P, Cresko W, Postlethwait JH, (2011) Stacks: building and genotyping loci de novo from short-read sequences. G3, 1, 171-182
    • (2011) G3 , vol.1 , pp. 171-182
    • Catchen, J.M.1    Amores, A.2    Hohenlohe, P.3    Cresko, W.4    Postlethwait, J.H.5
  • 14
    • 0026568461 scopus 로고
    • Apparent heterozygote deficiencies observed in DNA typing data and their implications in forensic applications
    • Chakraborty R, De Andrade M, Daiger SP, Budowle B, (1992) Apparent heterozygote deficiencies observed in DNA typing data and their implications in forensic applications. Annals of Human Genetics, 56, 45-57
    • (1992) Annals of Human Genetics , vol.56 , pp. 45-57
    • Chakraborty, R.1    De Andrade, M.2    Daiger, S.P.3    Budowle, B.4
  • 15
    • 74549118236 scopus 로고    scopus 로고
    • Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer
    • Chan YF, Marks ME, Jones FC, et al. (2010) Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science, 327, 302-305
    • (2010) Science , vol.327 , pp. 302-305
    • Chan, Y.F.1    Marks, M.E.2    Jones, F.C.3
  • 16
    • 33847668722 scopus 로고    scopus 로고
    • Microsatellite null alleles and estimation of population differentiation
    • Chapuis M-P, Estoup A, (2007) Microsatellite null alleles and estimation of population differentiation. Molecular Biology and Evolution, 24, 621-631
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 621-631
    • Chapuis, M.-P.1    Estoup, A.2
  • 17
    • 59449107920 scopus 로고    scopus 로고
    • Selective sweep at a quantitative trait locus in the presence of background genetic variation
    • Chevin LM, Hospital F, (2008) Selective sweep at a quantitative trait locus in the presence of background genetic variation. Genetics, 180, 1645-1660
    • (2008) Genetics , vol.180 , pp. 1645-1660
    • Chevin, L.M.1    Hospital, F.2
  • 18
    • 65649092976 scopus 로고    scopus 로고
    • Biopython: Freely available Python tools for computational molecular biology and bioinformatics
    • Cock PJA, Antao T, Chang JT, et al. (2009) Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics, 25, 1422-1423
    • (2009) Bioinformatics , vol.25 , pp. 1422-1423
    • Cock, P.J.A.1    Antao, T.2    Chang, J.T.3
  • 19
    • 20144371089 scopus 로고    scopus 로고
    • Widespread parallel evolution in sticklebacks by repeated fixation of ectodysplasin alleles
    • Colosimo PF, Hoseman KE, Balabhadra S, et al. (2005) Widespread parallel evolution in sticklebacks by repeated fixation of ectodysplasin alleles. Science, 307, 1928-1933
    • (2005) Science , vol.307 , pp. 1928-1933
    • Colosimo, P.F.1    Hoseman, K.E.2    Balabhadra, S.3
  • 20
    • 34547758457 scopus 로고    scopus 로고
    • Detecting shape differences in species of the Littorina saxatilis complex by morphometric analysis
    • Conde-Padin P, Grahame JW, Rolan-Alvarez E, (2007) Detecting shape differences in species of the Littorina saxatilis complex by morphometric analysis. Journal of Molluscan Studies, 73, 147-154
    • (2007) Journal of Molluscan Studies , vol.73 , pp. 147-154
    • Conde-Padin, P.1    Grahame, J.W.2    Rolan-Alvarez, E.3
  • 21
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Götz S, García-Gõmez JM, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics, 21, 3674-3676
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gõmez, J.M.3
  • 23
    • 77956491134 scopus 로고    scopus 로고
    • Using environmental correlations to identify loci underlying local adaptation
    • Coop G, Witonsky D, Di Rienzo A, Pritchard JK, (2010) Using environmental correlations to identify loci underlying local adaptation. Genetics, 185, 1411-1423
    • (2010) Genetics , vol.185 , pp. 1411-1423
    • Coop, G.1    Witonsky, D.2    Di Rienzo, A.3    Pritchard, J.K.4
  • 25
    • 79959435199 scopus 로고    scopus 로고
    • Genome-wide genetic marker discovery and genotyping using next-generation sequencing
    • Davey JW, Hohenlohe Pa, Etter PD, et al. (2011) Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nature Reviews Genetics, 12, 499-510
    • (2011) Nature Reviews Genetics , vol.12 , pp. 499-510
    • Davey, J.W.1    Hohenlohe, P.2    Etter, P.D.3
  • 26
    • 84878461117 scopus 로고    scopus 로고
    • Special features of RAD Sequencing data: Implications for genotyping
    • Davey JW, Cezard T, Fuentes-Utrilla P, et al. (2013) Special features of RAD Sequencing data: implications for genotyping. Molecular Ecology, 22, 3151-3164
    • (2013) Molecular Ecology , vol.22 , pp. 3151-3164
    • Davey, J.W.1    Cezard, T.2    Fuentes-Utrilla, P.3
  • 27
    • 79958024366 scopus 로고    scopus 로고
    • Global analysis of genes involved in freshwater adaptation in threespine sticklebacks (Gasterosteus aculeatus)
    • DeFaveri J, Shikano T, Shimada Y, Goto A, Merilä J, (2011) Global analysis of genes involved in freshwater adaptation in threespine sticklebacks (Gasterosteus aculeatus). Evolution, 65, 1800-1807
    • (2011) Evolution , vol.65 , pp. 1800-1807
    • DeFaveri, J.1    Shikano, T.2    Shimada, Y.3    Goto, A.4    Merilä, J.5
  • 28
    • 84903726447 scopus 로고    scopus 로고
    • PyRAD: Assembly of de novo RADseq loci for phylogenetic analyses
    • Eaton DAR, (2014) PyRAD: assembly of de novo RADseq loci for phylogenetic analyses. Bioinformatics, 30, 1844-1849
    • (2014) Bioinformatics , vol.30 , pp. 1844-1849
    • Eaton, D.A.R.1
  • 30
    • 84888274008 scopus 로고    scopus 로고
    • Genome sequencing and population genomics in non-model organisms
    • Ellegren H, (2014) Genome sequencing and population genomics in non-model organisms. Trends in Ecology & Evolution, 29, 51-63
    • (2014) Trends in Ecology & Evolution , vol.29 , pp. 51-63
    • Ellegren, H.1
  • 31
    • 79956051868 scopus 로고    scopus 로고
    • Adaptation in the age of ecological genomics: Insights from parallelism and convergence
    • Elmer KR, Meyer A, (2011) Adaptation in the age of ecological genomics: insights from parallelism and convergence. Trends in Ecology & Evolution, 26, 298-306
    • (2011) Trends in Ecology & Evolution , vol.26 , pp. 298-306
    • Elmer, K.R.1    Meyer, A.2
  • 32
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier L, Smouse PE, Quattro JM, (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 33
    • 70349506039 scopus 로고    scopus 로고
    • Detecting loci under selection in a hierarchically structured population
    • Excoffier L, Hofer T, Foll M, (2009) Detecting loci under selection in a hierarchically structured population. Heredity, 103, 285-298
    • (2009) Heredity , vol.103 , pp. 285-298
    • Excoffier, L.1    Hofer, T.2    Foll, M.3
  • 34
    • 84924357819 scopus 로고    scopus 로고
    • Genomics of divergence along a continuum of parapatric population differentiation
    • Feulner PGD, Chain FJJ, Panchal M, et al. (2015) Genomics of divergence along a continuum of parapatric population differentiation. PLoS Genetics, 11, e1004966
    • (2015) PLoS Genetics , vol.11 , pp. e1004966
    • Feulner, P.G.D.1    Chain, F.J.J.2    Panchal, M.3
  • 35
    • 58149347836 scopus 로고    scopus 로고
    • A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: A Bayesian perspective
    • Foll M, Gaggiotti O, (2008) A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics, 180, 977-993
    • (2008) Genetics , vol.180 , pp. 977-993
    • Foll, M.1    Gaggiotti, O.2
  • 36
    • 77955933103 scopus 로고    scopus 로고
    • An EST-based genome scan using 454 sequencing in the marine snail Littorina saxatilis
    • Galindo J, Grahame JW, Butlin RK, (2010) An EST-based genome scan using 454 sequencing in the marine snail Littorina saxatilis. Journal of Evolutionary Biology, 23, 2004-2016
    • (2010) Journal of Evolutionary Biology , vol.23 , pp. 2004-2016
    • Galindo, J.1    Grahame, J.W.2    Butlin, R.K.3
  • 37
    • 84880173092 scopus 로고    scopus 로고
    • Estimation of population allele frequencies from next-generation sequencing data: Pool-versus individual-based genotyping
    • Gautier M, Foucaud J, Gharbi K, et al. (2013a) Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping. Molecular Ecology, 22, 3766-3779
    • (2013) Molecular Ecology , vol.22 , pp. 3766-3779
    • Gautier, M.1    Foucaud, J.2    Gharbi, K.3
  • 38
    • 84878430432 scopus 로고    scopus 로고
    • The effect of RAD allele dropout on the estimation of genetic variation within and between populations
    • Gautier M, Gharbi K, Cezard T, et al. (2013b) The effect of RAD allele dropout on the estimation of genetic variation within and between populations. Molecular Ecology, 22, 3165-3178
    • (2013) Molecular Ecology , vol.22 , pp. 3165-3178
    • Gautier, M.1    Gharbi, K.2    Cezard, T.3
  • 39
    • 18844439645 scopus 로고    scopus 로고
    • Soft sweeps: Molecular population genetics of adaptation from standing genetic variation
    • Hermisson J, Pennings PS, (2005) Soft sweeps: molecular population genetics of adaptation from standing genetic variation. Genetics, 169, 2335-2352
    • (2005) Genetics , vol.169 , pp. 2335-2352
    • Hermisson, J.1    Pennings, P.S.2
  • 40
    • 0038752088 scopus 로고    scopus 로고
    • Different genes underlie adaptive melanism in different populations of rock pocket mice
    • Hoekstra HE, Nachman MW, (2003) Different genes underlie adaptive melanism in different populations of rock pocket mice. Molecular Ecology, 12, 1185-1194
    • (2003) Molecular Ecology , vol.12 , pp. 1185-1194
    • Hoekstra, H.E.1    Nachman, M.W.2
  • 41
    • 33745911143 scopus 로고    scopus 로고
    • A single amino acid mutation contributes to adaptive beach mouse color pattern
    • Hoekstra HE, Hirschmann RJ, Bundey RA, Insel Pa, Crossland JP, (2006) A single amino acid mutation contributes to adaptive beach mouse color pattern. Science, 313, 101-104
    • (2006) Science , vol.313 , pp. 101-104
    • Hoekstra, H.E.1    Hirschmann, R.J.2    Bundey, R.A.3    Insel, P.4    Crossland, J.P.5
  • 42
    • 77649219524 scopus 로고    scopus 로고
    • Population genomics of parallel adaptation in threespine stickleback using sequenced RAD Tags
    • Hohenlohe PA, Bassham S, Etter PD, et al. (2010) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD Tags. PloS Genetics, 6, e1000862
    • (2010) PloS Genetics , vol.6 , pp. e1000862
    • Hohenlohe, P.A.1    Bassham, S.2    Etter, P.D.3
  • 43
    • 84925658693 scopus 로고    scopus 로고
    • Selection on outlier loci and their association with adaptive phenotypes in Littorina saxatilis contact zones
    • Hollander J, Galindo J, Butlin RK, (2014) Selection on outlier loci and their association with adaptive phenotypes in Littorina saxatilis contact zones. Journal of Evolutionary Biology, 28, 328-337
    • (2014) Journal of Evolutionary Biology , vol.28 , pp. 328-337
    • Hollander, J.1    Galindo, J.2    Butlin, R.K.3
  • 44
    • 84904118414 scopus 로고    scopus 로고
    • Defining Loci in restriction-based reduced representation genomic data from nonmodel species: Sources of bias and diagnostics for optimal clustering
    • Ilut DC, Nydam ML, Hare MP, (2014) Defining Loci in restriction-based reduced representation genomic data from nonmodel species: sources of bias and diagnostics for optimal clustering. BioMed Research International, 2014, 675158
    • (2014) BioMed Research International , vol.2014 , pp. 675158
    • Ilut, D.C.1    Nydam, M.L.2    Hare, M.P.3
  • 45
    • 0030617963 scopus 로고    scopus 로고
    • Allozyme variation in a snail (Littorina saxatilis)-deconfounding the effects of microhabitat and gene flow
    • Johannesson K, Tatarenkov A, (1997) Allozyme variation in a snail (Littorina saxatilis)-deconfounding the effects of microhabitat and gene flow. Evolution, 51, 402-409
    • (1997) Evolution , vol.51 , pp. 402-409
    • Johannesson, K.1    Tatarenkov, A.2
  • 47
    • 80054949793 scopus 로고    scopus 로고
    • Adegenet 1. 3-1: New tools for the analysis of genome-wide SNP data
    • Jombart T, Ahmed I, (2011) adegenet 1. 3-1: new tools for the analysis of genome-wide SNP data. Bioinformatics, 27, 3070-3071
    • (2011) Bioinformatics , vol.27 , pp. 3070-3071
    • Jombart, T.1    Ahmed, I.2
  • 48
    • 84859462157 scopus 로고    scopus 로고
    • The genomic basis of adaptive evolution in threespine sticklebacks
    • Jones FC, Grabherr MG, Chan YF, et al. (2012) The genomic basis of adaptive evolution in threespine sticklebacks. Nature, 484, 55-61
    • (2012) Nature , vol.484 , pp. 55-61
    • Jones, F.C.1    Grabherr, M.G.2    Chan, Y.F.3
  • 49
    • 84856270961 scopus 로고    scopus 로고
    • Parallel and nonparallel aspects of ecological, phenotypic and genetic divergence across replicate population pairs of lake and stream stickleback
    • Kaeuffer R, Peichel CL, Bolnick DI, Hendry AP, (2012) Parallel and nonparallel aspects of ecological, phenotypic and genetic divergence across replicate population pairs of lake and stream stickleback. Evolution, 66, 402-418
    • (2012) Evolution , vol.66 , pp. 402-418
    • Kaeuffer, R.1    Peichel, C.L.2    Bolnick, D.I.3    Hendry, A.P.4
  • 50
    • 84881585860 scopus 로고    scopus 로고
    • DiveRsity: An R package for the estimation and exploration of population genetics parameters and their associated errors
    • Keenan K, McGinnity P, Cross TF, Crozier WW, Prodöhl Pa, (2013) diveRsity: An R package for the estimation and exploration of population genetics parameters and their associated errors. Methods in Ecology and Evolution, 4, 782-788
    • (2013) Methods in Ecology and Evolution , vol.4 , pp. 782-788
    • Keenan, K.1    McGinnity, P.2    Cross, T.F.3    Crozier, W.W.4    Prodöhl, P.5
  • 51
    • 84938989827 scopus 로고    scopus 로고
    • Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure
    • Kemppainen P, Knight CG, Sarma DK, et al. (2015) Linkage disequilibrium network analysis (LDna) gives a global view of chromosomal inversions, local adaptation and geographic structure. Molecular Ecology Resources, 15, 1031-1045
    • (2015) Molecular Ecology Resources , vol.15 , pp. 1031-1045
    • Kemppainen, P.1    Knight, C.G.2    Sarma, D.K.3
  • 52
    • 78650839801 scopus 로고    scopus 로고
    • MorphoJ: An integrated software package for geometric morphometrics
    • Klingenberg CP, (2011) MorphoJ: an integrated software package for geometric morphometrics. Molecular Ecology Resources, 11, 353-357
    • (2011) Molecular Ecology Resources , vol.11 , pp. 353-357
    • Klingenberg, C.P.1
  • 53
    • 4544284410 scopus 로고    scopus 로고
    • Shared and unique features of evolutionary diversification
    • Langerhans RB, DeWitt TJ, (2004) Shared and unique features of evolutionary diversification. The American Naturalist, 164, 335-349
    • (2004) The American Naturalist , vol.164 , pp. 335-349
    • Langerhans, R.B.1    DeWitt, T.J.2
  • 54
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li H, Handsaker B, Wysoker A, et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3
  • 55
    • 0032582489 scopus 로고    scopus 로고
    • Extended life-span and stress resistance in the Drosophila mutant methuselah
    • Lin YJ, Seroude L, Benzer S, (1998) Extended life-span and stress resistance in the Drosophila mutant methuselah. Science, 282, 943-946
    • (1998) Science , vol.282 , pp. 943-946
    • Lin, Y.J.1    Seroude, L.2    Benzer, S.3
  • 57
    • 43049119631 scopus 로고    scopus 로고
    • Genetic differentiation on multiple spatial scales in an ecotype-forming marine snail with limited dispersal: Littorina saxatilis
    • Mäkinen T, Panova M, Johannesson K, et al. (2008) Genetic differentiation on multiple spatial scales in an ecotype-forming marine snail with limited dispersal: Littorina saxatilis. Biological Journal of the Linnean Society, 94, 31-40
    • (2008) Biological Journal of the Linnean Society , vol.94 , pp. 31-40
    • Mäkinen, T.1    Panova, M.2    Johannesson, K.3
  • 58
    • 84935424831 scopus 로고    scopus 로고
    • Gene duplication, population genomics and species-level differentiation within a tropical mountain shrub
    • Mastretta-Yanes A, Zamudio S, Jorgensen TH, et al. (2014) Gene duplication, population genomics and species-level differentiation within a tropical mountain shrub. Genome Biology and Evolution, 6, 2611-2624
    • (2014) Genome Biology and Evolution , vol.6 , pp. 2611-2624
    • Mastretta-Yanes, A.1    Zamudio, S.2    Jorgensen, T.H.3
  • 59
    • 84932109367 scopus 로고    scopus 로고
    • RAD sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
    • Mastretta-Yanes A, Arrigo N, Alvarez N, et al. (2015) RAD sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference. Molecular Ecology Resources, 1, 28-41
    • (2015) Molecular Ecology Resources , vol.1 , pp. 28-41
    • Mastretta-Yanes, A.1    Arrigo, N.2    Alvarez, N.3
  • 60
    • 84885911072 scopus 로고    scopus 로고
    • Population genomics of rapid adaptation by soft selective sweeps
    • Messer PW, Petrov DA, (2013) Population genomics of rapid adaptation by soft selective sweeps. Trends in Ecology & Evolution, 28, 659-669
    • (2013) Trends in Ecology & Evolution , vol.28 , pp. 659-669
    • Messer, P.W.1    Petrov, D.A.2
  • 62
    • 29444452921 scopus 로고    scopus 로고
    • Molecular signatures of natural selection
    • Nielsen R, (2005) Molecular signatures of natural selection. Annual Review of Genetics, 39, 197-218
    • (2005) Annual Review of Genetics , vol.39 , pp. 197-218
    • Nielsen, R.1
  • 63
    • 27544437635 scopus 로고    scopus 로고
    • Genomic scans for selective sweeps using SNP data
    • Nielsen R, Williamson S, Kim Y, et al. (2005) Genomic scans for selective sweeps using SNP data. Genome Research, 15, 1566-1575
    • (2005) Genome Research , vol.15 , pp. 1566-1575
    • Nielsen, R.1    Williamson, S.2    Kim, Y.3
  • 64
    • 33750217612 scopus 로고    scopus 로고
    • Site-specific genetic divergence in parallel hybrid zones suggests nonallopatric evolution of reproductive barriers
    • Panova M, Hollander J, Johannesson K, (2006) Site-specific genetic divergence in parallel hybrid zones suggests nonallopatric evolution of reproductive barriers. Molecular Ecology, 15, 4021-4031
    • (2006) Molecular Ecology , vol.15 , pp. 4021-4031
    • Panova, M.1    Hollander, J.2    Johannesson, K.3
  • 65
    • 79952614772 scopus 로고    scopus 로고
    • Glacial history of the North Atlantic marine snail, Littorina saxatilis, inferred from distribution of mitochondrial DNA lineages
    • Panova M, Blakeslee AMH, Miller WA, et al. (2011) Glacial history of the North Atlantic marine snail, Littorina saxatilis, inferred from distribution of mitochondrial DNA lineages. PLoS One, 6, e17511
    • (2011) PLoS One , vol.6 , pp. e17511
    • Panova, M.1    Blakeslee, A.M.H.2    Miller, W.A.3
  • 66
    • 84887318015 scopus 로고    scopus 로고
    • Parallel and nonparallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon
    • Perrier C, Bourret V, Kent MP, Bernatchez L, (2013) Parallel and nonparallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon. Molecular Ecology, 22, 5577-5593
    • (2013) Molecular Ecology , vol.22 , pp. 5577-5593
    • Perrier, C.1    Bourret, V.2    Kent, M.P.3    Bernatchez, L.4
  • 67
    • 76749097550 scopus 로고    scopus 로고
    • The genetics of human adaptation: Hard sweeps, soft sweeps, and polygenic adaptation
    • Pritchard JK, Pickrell JK, Coop G, (2010) The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation. Current Biology, 20, R208-R215
    • (2010) Current Biology , vol.20 , pp. R208-R215
    • Pritchard, J.K.1    Pickrell, J.K.2    Coop, G.3
  • 68
    • 84863304598 scopus 로고    scopus 로고
    • R Development Core Team. R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team (2012) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria
    • (2012) R: A Language and Environment for Statistical Computing
  • 69
    • 84886611135 scopus 로고    scopus 로고
    • The effect of multiple paternity on genetic diversity of small populations during and after colonisation
    • Rafajlovic M, Eriksson A, Rimark A, et al. (2013) The effect of multiple paternity on genetic diversity of small populations during and after colonisation. PLoS One, 8, 1-9
    • (2013) PLoS One , vol.8 , pp. 1-9
    • Rafajlovic, M.1    Eriksson, A.2    Rimark, A.3
  • 70
    • 84871157927 scopus 로고    scopus 로고
    • Parallel and nonparallel ecological, morphological and genetic divergence in lake - Stream stickleback from a single catchment
    • Ravinet M, Prodöhl PA, Harrod C, (2013) Parallel and nonparallel ecological, morphological and genetic divergence in lake-stream stickleback from a single catchment. Journal of Evolutionary Biology, 26, 186-204
    • (2013) Journal of Evolutionary Biology , vol.26 , pp. 186-204
    • Ravinet, M.1    Prodöhl, P.A.2    Harrod, C.3
  • 73
    • 78751672580 scopus 로고    scopus 로고
    • SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.)
    • Renaut S, Nolte AW, Rogers SM, Derome N, Bernatchez L, (2010) SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.). Molecular Ecology, 20, 545-559
    • (2010) Molecular Ecology , vol.20 , pp. 545-559
    • Renaut, S.1    Nolte, A.W.2    Rogers, S.M.3    Derome, N.4    Bernatchez, L.5
  • 74
    • 84891821460 scopus 로고    scopus 로고
    • Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers
    • Renaut S, Owens GL, Rieseberg LH, (2014) Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers. Molecular Ecology, 23, 311-324
    • (2014) Molecular Ecology , vol.23 , pp. 311-324
    • Renaut, S.1    Owens, G.L.2    Rieseberg, L.H.3
  • 76
    • 84878428537 scopus 로고    scopus 로고
    • Genomic evidence for the parallel evolution of coastal forms in the Senecio lautus complex
    • Roda F, Ambrose L, Walter GM, et al. (2013a) Genomic evidence for the parallel evolution of coastal forms in the Senecio lautus complex. Molecular Ecology, 22, 2941-2952
    • (2013) Molecular Ecology , vol.22 , pp. 2941-2952
    • Roda, F.1    Ambrose, L.2    Walter, G.M.3
  • 77
    • 84883554258 scopus 로고    scopus 로고
    • Convergence and divergence during the adaptation to similar environments by an Australian groundsel
    • Roda F, Liu H, Wilkinson MJ, et al. (2013b) Convergence and divergence during the adaptation to similar environments by an Australian groundsel. Evolution, 67, 2515-2529
    • (2013) Evolution , vol.67 , pp. 2515-2529
    • Roda, F.1    Liu, H.2    Wilkinson, M.J.3
  • 78
    • 84862025426 scopus 로고    scopus 로고
    • Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs
    • Roesti M, Hendry AP, Salzburger W, Berner D, (2012a) Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs. Molecular Ecology, 21, 2852-2862
    • (2012) Molecular Ecology , vol.21 , pp. 2852-2862
    • Roesti, M.1    Hendry, A.P.2    Salzburger, W.3    Berner, D.4
  • 79
    • 84862564389 scopus 로고    scopus 로고
    • Uninformative polymorphisms bias genome scans for signatures of selection
    • Roesti M, Salzburger W, Berner D, (2012b) Uninformative polymorphisms bias genome scans for signatures of selection. BMC Evolutionary Biology, 12, 94
    • (2012) BMC Evolutionary Biology , vol.12 , pp. 94
    • Roesti, M.1    Salzburger, W.2    Berner, D.3
  • 81
    • 84954076333 scopus 로고    scopus 로고
    • Department of Ecology and Evolution, State University of New York, Stony Brook, New York
    • Rohlf FJ, (2010) tpsDig 2.16. Distributed by Author. Department of Ecology and Evolution, State University of New York, Stony Brook, New York
    • (2010) TpsDig 2.16. Distributed by Author
    • Rohlf, F.J.1
  • 82
    • 7044274651 scopus 로고    scopus 로고
    • Nonallopatric and parallel origin of local reproductive barriers between two snail ecotypes
    • Rolán-Alvarez E, Carballo M, Galindo J, et al. (2004) Nonallopatric and parallel origin of local reproductive barriers between two snail ecotypes. Molecular Ecology, 13, 3415-3424
    • (2004) Molecular Ecology , vol.13 , pp. 3415-3424
    • Rolán-Alvarez, E.1    Carballo, M.2    Galindo, J.3
  • 83
    • 0033955524 scopus 로고    scopus 로고
    • Natural selection and parallel speciation in sympatric sticklebacks
    • Rundle HD, Nagel L, Boughman JW, Schluter D, (2000) Natural selection and parallel speciation in sympatric sticklebacks. Science, 287, 306-308
    • (2000) Science , vol.287 , pp. 306-308
    • Rundle, H.D.1    Nagel, L.2    Boughman, J.W.3    Schluter, D.4
  • 85
    • 0028797447 scopus 로고
    • Parallel speciation by natural selection
    • Schluter D, Nagel L, (1995) Parallel speciation by natural selection. American Naturalist, 146, 292-301
    • (1995) American Naturalist , vol.146 , pp. 292-301
    • Schluter, D.1    Nagel, L.2
  • 86
    • 84900439893 scopus 로고    scopus 로고
    • Stick insect genomes reveal natural selection's role in parallel speciation
    • Soria-Carrasco V, Gompert Z, Comeault AA, et al. (2014) Stick insect genomes reveal natural selection's role in parallel speciation. Science, 344, 738-742
    • (2014) Science , vol.344 , pp. 738-742
    • Soria-Carrasco, V.1    Gompert, Z.2    Comeault, A.A.3
  • 88
    • 59849107271 scopus 로고    scopus 로고
    • Is genetic evolution predictable?
    • Stern D, Orgogozo V, (2009) Is genetic evolution predictable? Science, 323, 746-751
    • (2009) Science , vol.323 , pp. 746-751
    • Stern, D.1    Orgogozo, V.2
  • 89
    • 14844313712 scopus 로고    scopus 로고
    • Using genome scans of DNA polymorphism to infer adaptive population divergence
    • Storz JF, (2005) Using genome scans of DNA polymorphism to infer adaptive population divergence. Molecular Ecology, 14, 671-688
    • (2005) Molecular Ecology , vol.14 , pp. 671-688
    • Storz, J.F.1
  • 90
    • 33744815615 scopus 로고    scopus 로고
    • How reliable are empirical genomic scans for selective sweeps?
    • Teshima KM, Coop G, Przeworski M, (2006) How reliable are empirical genomic scans for selective sweeps? Genome Research, 16, 702-712
    • (2006) Genome Research , vol.16 , pp. 702-712
    • Teshima, K.M.1    Coop, G.2    Przeworski, M.3
  • 91
    • 84863496231 scopus 로고    scopus 로고
    • Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
    • The Heliconius Genome Consortium
    • The Heliconius Genome Consortium (2012) Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature, 487, 94-98
    • (2012) Nature , vol.487 , pp. 94-98
  • 92
    • 21844482149 scopus 로고
    • Karyotype analysis and genome size in three Mediterranean species of periwinkles (Prosobranchia: Mesogastropoda)
    • Vitturi R, Libertini A, Panozzo M, Mezzapelle G, (1995) Karyotype analysis and genome size in three Mediterranean species of periwinkles (Prosobranchia: Mesogastropoda). Malacologia, 37, 123-132
    • (1995) Malacologia , vol.37 , pp. 123-132
    • Vitturi, R.1    Libertini, A.2    Panozzo, M.3    Mezzapelle, G.4
  • 93
    • 84908110112 scopus 로고    scopus 로고
    • Do the same genes underlie parallel phenotypic divergence in different Littorina saxatilis populations?
    • Westram A, Galindo J, Rosenblad MA, et al. (2014) Do the same genes underlie parallel phenotypic divergence in different Littorina saxatilis populations? Molecular Ecology, 23, 4603-4616
    • (2014) Molecular Ecology , vol.23 , pp. 4603-4616
    • Westram, A.1    Galindo, J.2    Rosenblad, M.A.3
  • 95
    • 77951820899 scopus 로고    scopus 로고
    • Fast and SNP-tolerant detection of complex variants and splicing in short reads
    • Wu TD, Nacu S, (2010) Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics, 26, 873-881
    • (2010) Bioinformatics , vol.26 , pp. 873-881
    • Wu, T.D.1    Nacu, S.2
  • 96
    • 18744383071 scopus 로고    scopus 로고
    • GMAP: A genomic mapping and alignment program for mRNA and EST sequences
    • Wu TD, Watanabe CK, (2005) GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics, 21, 1859-1875
    • (2005) Bioinformatics , vol.21 , pp. 1859-1875
    • Wu, T.D.1    Watanabe, C.K.2
  • 97
    • 79960020226 scopus 로고    scopus 로고
    • The genetic architecture of adaptation under migration-selection balance
    • Yeaman S, Whitlock MC, (2011) The genetic architecture of adaptation under migration-selection balance. Evolution, 65, 1897-1911
    • (2011) Evolution , vol.65 , pp. 1897-1911
    • Yeaman, S.1    Whitlock, M.C.2
  • 98
    • 0033572510 scopus 로고    scopus 로고
    • Identification of a novel protocadherin gene (PCDH11) on the human XY homology region in Xq21.3
    • Yoshida K, Sugano S, (1999) Identification of a novel protocadherin gene (PCDH11) on the human XY homology region in Xq21.3. Genomics, 62, 540-543
    • (1999) Genomics , vol.62 , pp. 540-543
    • Yoshida, K.1    Sugano, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.