-
1
-
-
27144491328
-
Adaptive evolution of non-coding DNA in Drosophila
-
Andolfatto, P., 2005 Adaptive evolution of non-coding DNA in Drosophila. Nature 437: 1149-1152.
-
(2005)
Nature
, vol.437
, pp. 1149-1152
-
-
Andolfatto, P.1
-
2
-
-
0021252895
-
DNA methylation in the fungi
-
Antequera, F., M. Tamame, J. Villanueva, and T. Santos, 1984 DNA methylation in the fungi. J. Biol. Chem. 259: 8033-8036.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 8033-8036
-
-
Antequera, F.1
Tamame, M.2
Villanueva, J.3
Santos, T.4
-
3
-
-
84871771284
-
ea-utils: Command-line tools for processing biological sequencing data
-
Aronesty, E., 2011 ea-utils: Command-line tools for processing biological sequencing data. Available at: http://code.google.com/p/ea-utils.
-
(2011)
-
-
Aronesty, E.1
-
4
-
-
45249089738
-
A simple way to treat PCR products prior to sequencing using ExoSAP-IT
-
Bell, J., 2008 A simple way to treat PCR products prior to sequencing using ExoSAP-IT. Biotechniques 44: 834.
-
(2008)
Biotechniques
, vol.44
, pp. 834
-
-
Bell, J.1
-
6
-
-
67849099231
-
Identification of EMS-induced mutations in Drosophila melanogaster by whole-genome sequencing
-
Blumenstiel, J. P., A. C. Noll, J. A. Griffiths, A. G. Perera, K. N. Walton et al., 2009 Identification of EMS-induced mutations in Drosophila melanogaster by whole-genome sequencing. Genetics 182: 25-32.
-
(2009)
Genetics
, vol.182
, pp. 25-32
-
-
Blumenstiel, J.P.1
Noll, A.C.2
Griffiths, A.J.3
Perera, A.G.4
Walton, K.N.5
-
7
-
-
0021690298
-
Cell cycle phases in the unequal mother/daughter cell cycles of Saccharomyces cerevisiae
-
Brewer, B. J., E. Chlebowicz-Sledziewska, and W. L. Fangman, 1984 Cell cycle phases in the unequal mother/daughter cell cycles of Saccharomyces cerevisiae. Mol. Cell. Biol. 4: 2529-2531.
-
(1984)
Mol. Cell. Biol.
, vol.4
, pp. 2529-2531
-
-
Brewer, B.J.1
Chlebowicz-Sledziewska, E.2
Fangman, W.L.3
-
8
-
-
34247877686
-
Xlf1 is required for DNA repair by nonhomologous end joining in Schizosaccharomyces pombe
-
Cavero, S., C. Chahwan, and P. Russell, 2007 Xlf1 is required for DNA repair by nonhomologous end joining in Schizosaccharomyces pombe. Genetics 175: 963-967.
-
(2007)
Genetics
, vol.175
, pp. 963-967
-
-
Cavero, S.1
Chahwan, C.2
Russell, P.3
-
9
-
-
0026592966
-
8- Hydroxyguanine, an abundant form of oxidative DNA damage, causes G--T and A--C substitutions
-
Cheng, K. C., D. S. Cahill, H. Kasai, S. Nishimura, and L. A. Loeb, 1992 8- Hydroxyguanine, an abundant form of oxidative DNA damage, causes G--T and A--C substitutions. J. Biol. Chem. 267: 166-172.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 166-172
-
-
Cheng, K.C.1
Cahill, D.S.2
Kasai, H.3
Nishimura, S.4
Loeb, L.A.5
-
10
-
-
29244463205
-
Nonhomologous end joining in yeast
-
Daley, J. M., P. L. Palmbos, D. Wu, and T. E. Wilson, 2005 Nonhomologous end joining in yeast. Annu. Rev. Genet. 39: 431-451.
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 431-451
-
-
Daley, J.M.1
Palmbos, P.L.2
Wu, D.3
Wilson, T.E.4
-
11
-
-
79960405019
-
The variant call format and VCFtools
-
Danecek, P., A. Auton, G. Abecasis, C. A. Albers, E. Banks et al., 2011 The variant call format and VCFtools. Bioinformatics 27: 2156-2158.
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
Auton, A.2
Abecasis, G.3
Albers, C.A.4
Banks, E.5
-
12
-
-
3943059570
-
High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome
-
Denver, D. R., K. Morris, M. Lynch, and W. K. Thomas, 2004 High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome. Nature 430: 679-682.
-
(2004)
Nature
, vol.430
, pp. 679-682
-
-
Denver, D.R.1
Morris, K.2
Lynch, M.3
Thomas, W.K.4
-
13
-
-
33748894494
-
The relative roles of three DNA repair pathways in preventing Caenorhabditis elegans mutation accumulation
-
Denver, D. R., S. Feinberg, C. Steding, M. Durbin, and M. Lynch, 2006 The relative roles of three DNA repair pathways in preventing Caenorhabditis elegans mutation accumulation. Genetics 174: 57-65.
-
(2006)
Genetics
, vol.174
, pp. 57-65
-
-
Denver, D.R.1
Feinberg, S.2
Steding, C.3
Durbin, M.4
Lynch, M.5
-
14
-
-
84864089075
-
Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes
-
Denver, D. R., L. J. Wilhelm, D. K. Howe, K. Gafner, P. C. Dolan et al., 2012 Variation in base-substitution mutation in experimental and natural lineages of Caenorhabditis nematodes. Genome Biol. Evol. 4: 513-522.
-
(2012)
Genome Biol. Evol.
, vol.4
, pp. 513-522
-
-
Denver, D.R.1
Wilhelm, L.J.2
Howe, D.K.3
Gafner, K.4
Dolan, P.C.5
-
15
-
-
7444237566
-
The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?
-
Douzery, E. J., E. A. Snell, E. Bapteste, F. Delsuc, and H. Philippe, 2004 The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils? Proc. Natl. Acad. Sci. USA 101: 15386-15391.
-
(2004)
Proc Natl. Acad. Sci. USA
, vol.101
, pp. 15386-15391
-
-
Douzery, E.J.1
Snell, E.A.2
Bapteste, E.3
Delsuc, F.4
Philippe, H.5
-
16
-
-
84941668361
-
The spontaneous mutation rate in the fission yeast Schizosaccharomyces pombe
-
Farlow, A., H. Long, S. Arnoux, W. Sung, T. G. Doak et al., 2015 The spontaneous mutation rate in the fission yeast Schizosaccharomyces pombe. Genetics 201: 737-744.
-
(2015)
Genetics
, vol.201
, pp. 737-744
-
-
Farlow, A.1
Long, H.2
Arnoux, S.3
Sung, W.4
Doak, T.G.5
-
17
-
-
10244239321
-
Life with 6000 genes
-
Goffeau, A., B. G. Barrell, H. Bussey, R. W. Davis, B. Dujon et al., 1996 Life with 6000 genes. Science 274: 546-567.
-
(1996)
Science
, vol.274
, pp. 546-567
-
-
Goffeau, A.1
Barrell, B.G.2
Bussey, H.3
Davis, R.W.4
Dujon, B.5
-
18
-
-
84874604550
-
-
FASTQ/A short-reads preprocessing tools (unpublished)
-
Gordon, A., and G. Hannon, 2010 Fastx-toolkit. FASTQ/A short-reads preprocessing tools (unpublished). Available at: http://hannonlab.cshl.edu/fastx_toolkit.
-
(2010)
Fastx-toolkit
-
-
Gordon, A.1
Hannon, G.2
-
19
-
-
84953776977
-
Single-base mutation
-
edited by D. Cooper, Macmillan Publishers, Nature Publishing Group, London.
-
Graur, D., 2003 Single-base mutation, pp. 287-290 in Nature encyclopedia of the human genome, edited by D. Cooper, Macmillan Publishers, Nature Publishing Group, London.
-
(2003)
in Nature encyclopedia of the human genome
, pp. 287-290
-
-
Graur, D.1
-
20
-
-
10744225138
-
Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis
-
Greene, E. A., C. A. Codomo, N. E. Taylor, J. G. Henikoff, B. J. Till et al., 2003 Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics 164: 731-740.
-
(2003)
Genetics
, vol.164
, pp. 731-740
-
-
Greene, E.A.1
Codomo, C.A.2
Taylor, N.E.3
Henikoff, J.G.4
Till, B.J.5
-
21
-
-
47149108695
-
Spontaneous mutations in diploid Saccharomyces cerevisiae: another thousand cell generations
-
Hall, D. W., R. Mahmoudizad, A. W. Hurd, and S. B. Joseph, 2008 Spontaneous mutations in diploid Saccharomyces cerevisiae: another thousand cell generations. Genet. Res. 90: 229-241.
-
(2008)
Genet. Res.
, vol.90
, pp. 229-241
-
-
Hall, D.W.1
Mahmoudizad, R.2
Hurd, A.W.3
Joseph, S.B.4
-
22
-
-
77951697965
-
Spontaneous mutation accumulation studies in evolutionary genetics
-
Halligan, D. L., and P. D. Keightley, 2009 Spontaneous mutation accumulation studies in evolutionary genetics. Annu. Rev. Ecol. Evol. Syst. 40: 151-172.
-
(2009)
Annu. Rev. Ecol. Evol. Syst.
, vol.40
, pp. 151-172
-
-
Halligan, D.L.1
Keightley, P.D.2
-
23
-
-
0035839062
-
Molecular evidence for the early colonization of land by fungi and plants
-
Heckman, D. S., D. M. Geiser, B. R. Eidell, R. L. Stauffer, N. L. Kardos et al., 2001 Molecular evidence for the early colonization of land by fungi and plants. Science 293: 1129-1133.
-
(2001)
Science
, vol.293
, pp. 1129-1133
-
-
Heckman, D.S.1
Geiser, D.M.2
Eidell, B.R.3
Stauffer, R.L.4
Kardos, L.N.5
-
24
-
-
33750438774
-
Genome-wide characterization of fission yeast DNA replication origins
-
Heichinger, C., C. J. Penkett, J. Bähler, and P. Nurse, 2006 Genome-wide characterization of fission yeast DNA replication origins. EMBO J. 25: 5171-5179.
-
(2006)
EMBO J.
, vol.25
, pp. 5171-5179
-
-
Heichinger, C.1
Penkett, C.J.2
Bähler, J.3
Nurse, P.4
-
26
-
-
20444427160
-
Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
-
Ho, S. Y., M. J. Phillips, A. Cooper, and A. J. Drummond, 2005 Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol. Biol. Evol. 22: 1561-1568.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1561-1568
-
-
Ho, S.Y.1
Phillips, M.J.2
Cooper, A.3
Drummond, A.J.4
-
27
-
-
7544225525
-
Rapid accumulation of mutations during seed-to-seed propagation of mismatch-repair-defective Arabidopsis
-
Hoffman, P. D., J. M. Leonard, G. E. Lindberg, S. R. Bollmann, and J. B. Hays, 2004 Rapid accumulation of mutations during seed-to-seed propagation of mismatch-repair-defective Arabidopsis. Genes Dev. 18: 2676- 2685.
-
(2004)
Genes Dev.
, vol.18
, pp. 2676- 2685
-
-
Hoffman, P.D.1
Leonard, J.M.2
Lindberg, G.E.3
Bollmann, S.R.4
Hays, J.B.5
-
28
-
-
0030700468
-
A role for REV3 in mutagenesis during double-strand break repair in Saccharomyces cerevisiae
-
Holbeck, S. L., and J. N. Strathern, 1997 A role for REV3 in mutagenesis during double-strand break repair in Saccharomyces cerevisiae. Genetics 147: 1017-1024.
-
(1997)
Genetics
, vol.147
, pp. 1017-1024
-
-
Holbeck, S.L.1
Strathern, J.N.2
-
29
-
-
0034733595
-
DNA damage and cell cycle control in Schizosaccharomyces pombe
-
Humphrey, T., 2000 DNA damage and cell cycle control in Schizosaccharomyces pombe. Mutat. Res. Fundam.Mol. Mech.Mutagen. 451: 211-226.
-
(2000)
Mutat. Res. Fundam.Mol. Mech.Mutagen.
, vol.451
, pp. 211-226
-
-
Humphrey, T.1
-
30
-
-
0034736512
-
Covariation of GC content and the silent site substitution rate in rodents: implications for methodology and for the evolution of isochores
-
Hurst, L. D., and E. J. B. Williams, 2000 Covariation of GC content and the silent site substitution rate in rodents: implications for methodology and for the evolution of isochores. Gene 261: 107-114.
-
(2000)
Gene
, vol.261
, pp. 107-114
-
-
Hurst, L.D.1
Williams, E.J.B.2
-
31
-
-
84924074129
-
The genomic and phenotypic diversity of Schizosaccharomyces pombe
-
Jeffares, D. C., C. Rallis, A. Rieux, D. Speed, M. Prevorovskỳ et al., 2015 The genomic and phenotypic diversity of Schizosaccharomyces pombe. Nature Genetics 47: 235-241.
-
(2015)
Nature Genetics
, vol.47
, pp. 235-241
-
-
Jeffares, D.C.1
Rallis, C.2
Rieux, A.3
Speed, D.4
Prevorovskỳ, M.5
-
32
-
-
11244275516
-
Spontaneous mutations in diploid Saccharomyces cerevisiae more beneficial than expected
-
Joseph, S. B., and D. W. Hall, 2004 Spontaneous mutations in diploid Saccharomyces cerevisiae more beneficial than expected. Genetics 168: 1817-1825.
-
(2004)
Genetics
, vol.168
, pp. 1817-1825
-
-
Joseph, S.B.1
Hall, D.W.2
-
33
-
-
14544279926
-
Survey of simple sequence repeats in completed fungal genomes
-
Karaoglu, H., C. M. Y. Lee, and W. Meyer, 2005 Survey of simple sequence repeats in completed fungal genomes. Mol. Biol. Evol. 22: 639-649.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 639-649
-
-
Karaoglu, H.1
Lee, C.M.Y.2
Meyer, W.3
-
34
-
-
67650064592
-
Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines
-
Keightley, P. D., U. Trivedi, M. Thomson, F. Oliver, S. Kumar et al., 2009 Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines. Genome Res. 19: 1195-1201.
-
(2009)
Genome Res.
, vol.19
, pp. 1195-1201
-
-
Keightley, P.D.1
Trivedi, U.2
Thomson, M.3
Oliver, F.4
Kumar, S.5
-
35
-
-
79952228971
-
Cellcycle analysis of fission yeast cells by flow cytometry
-
Knutsen, J. H., I. D. Rein, C. Rothe, T. Stokke, B. Grallert et al., 2011 Cellcycle analysis of fission yeast cells by flow cytometry. PLoS One 6: e17175.
-
(2011)
PLoS One
, vol.6
-
-
Knutsen, J.H.1
Rein, I.D.2
Rothe, C.3
Stokke, T.4
Grallert, B.5
-
36
-
-
0020085122
-
EMS-and relationinduced mutation frequencies at individual loci in Arabidopsis thaliana (L.) Heynh
-
Koornneeff, M., L. Dellaert, and J. Van der Veen, 1982 EMS-and relationinduced mutation frequencies at individual loci in Arabidopsis thaliana (L.) Heynh. Mutat. Res. Fundam. Mol. Mech. Mutagen. 93: 109-123.
-
(1982)
Mutat. Res. Fundam. Mol. Mech. Mutagen.
, vol.93
, pp. 109-123
-
-
Koornneeff, M.1
Dellaert, L.2
Van der Veen, J.3
-
37
-
-
0000936258
-
Die vererbung von homothallie und heterothallie bei Schizosaccharomyces pombe
-
Leupold, U., 1950 Die vererbung von homothallie und heterothallie bei Schizosaccharomyces pombe. C. R. Trav. Lab. Carlsberg., Ser. Physiol. 24: 381-480.
-
(1950)
C. R. Trav. Lab. Carlsberg., Ser. Physiol.
, vol.24
, pp. 381-480
-
-
Leupold, U.1
-
38
-
-
0023256559
-
Slipped-strand mispairing: a major mechanism for DNA sequence evolution
-
Levinson, G., and G. A. Gutman, 1987 Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4: 203-221.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 203-221
-
-
Levinson, G.1
Gutman, G.A.2
-
39
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., and R. Durbin, 2009 Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
40
-
-
62649089109
-
Population genomics of domestic and wild yeasts
-
Liti, G., D. M. Carter, A. M. Moses, J. Warringer, L. Parts et al., 2009 Population genomics of domestic and wild yeasts. Nature 458: 337-341.
-
(2009)
Nature
, vol.458
, pp. 337-341
-
-
Liti, G.1
Carter, D.M.2
Moses, A.M.3
Warringer, J.4
Parts, L.5
-
41
-
-
77955090647
-
Evolution of the mutation rate
-
Lynch, M., 2010 Evolution of the mutation rate. Trends Genet. 26: 345-352.
-
(2010)
Trends Genet.
, vol.26
, pp. 345-352
-
-
Lynch, M.1
-
42
-
-
48249133274
-
A genome-wide view of the spectrum of spontaneous mutations in yeast
-
Lynch, M., W. Sung, K. Morris, N. Coffey, C. R. Landry et al., 2008 A genome-wide view of the spectrum of spontaneous mutations in yeast. Proc. Natl. Acad. Sci. USA 105: 9272-9277.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 9272-9277
-
-
Lynch, M.1
Sung, W.2
Morris, K.3
Coffey, N.4
Landry, C.R.5
-
43
-
-
0035103768
-
Masking and purging mutations following EMS treatment in haploid, diploid and tetraploid yeast (Saccharomyces cerevisiae)
-
Mable, B. K., and S. P. Otto, 2001 Masking and purging mutations following EMS treatment in haploid, diploid and tetraploid yeast (Saccharomyces cerevisiae). Genet. Res. 77: 9-26.
-
(2001)
Genet. Res.
, vol.77
, pp. 9-26
-
-
Mable, B.K.1
Otto, S.P.2
-
44
-
-
0035023263
-
Control of GT repeat stability in Schizosaccharomyces pombe by mismatch repair factors
-
Mansour, A. A., C. Tornier, E. Lehmann, M. Darmon, and O. Fleck, 2001 Control of GT repeat stability in Schizosaccharomyces pombe by mismatch repair factors. Genetics 158: 77-85.
-
(2001)
Genetics
, vol.158
, pp. 77-85
-
-
Mansour, A.A.1
Tornier, C.2
Lehmann, E.3
Darmon, M.4
Fleck, O.5
-
45
-
-
77956295988
-
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A., M. Hanna, E. Banks, A. Sivachenko, K. Cibulskis et al., 2010 The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20: 1297-1303.
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
-
46
-
-
77955405475
-
Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
-
McLaren, W., B. Pritchard, D. Rios, Y. Chen, P. Flicek et al., 2010 Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics 26: 2069-2070.
-
(2010)
Bioinformatics
, vol.26
, pp. 2069-2070
-
-
McLaren, W.1
Pritchard, B.2
Rios, D.3
Chen, Y.4
Flicek, P.5
-
47
-
-
0342817350
-
Types of visible variations induced by X-rays in Drosophila
-
Muller, H. J., 1930 Types of visible variations induced by X-rays in Drosophila. J. Genet. 22: 299-334.
-
(1930)
J. Genet.
, vol.22
, pp. 299-334
-
-
Muller, H.J.1
-
48
-
-
0033828761
-
Estimate of the mutation rate per nucleotide in humans
-
Nachman, M. W., and S. L. Crowell, 2000 Estimate of the mutation rate per nucleotide in humans. Genetics 156: 297-304.
-
(2000)
Genetics
, vol.156
, pp. 297-304
-
-
Nachman, M.W.1
Crowell, S.L.2
-
49
-
-
0018332648
-
A control acting over the initiation of DNA replication in the yeast Schizosaccharomyces pombe
-
Nasmyth, K. A., 1979 A control acting over the initiation of DNA replication in the yeast Schizosaccharomyces pombe. J. Cell Sci. 36: 155-168.
-
(1979)
J. Cell Sci.
, vol.36
, pp. 155-168
-
-
Nasmyth, K.A.1
-
50
-
-
84870709677
-
Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii
-
Ness, R. W., A. D. Morgan, N. Colegrave, and P. D. Keightley, 2012 Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii. Genetics 192: 1447-1454.
-
(2012)
Genetics
, vol.192
, pp. 1447-1454
-
-
Ness, R.W.1
Morgan, A.D.2
Colegrave, N.3
Keightley, P.D.4
-
51
-
-
78049433266
-
The baker's yeast diploid genome is remarkably stable in vegetative growth and meiosis
-
Nishant, K., W. Wei, E. Mancera, J. L. Argueso, A. Schlattl et al., 2010 The baker's yeast diploid genome is remarkably stable in vegetative growth and meiosis. PLoS Genet. 6: e1001109.
-
(2010)
PLoS Genet.
, vol.6
-
-
Nishant, K.1
Wei, W.2
Mancera, E.3
Argueso, J.L.4
Schlattl, A.5
-
52
-
-
0021918226
-
Triploid meiosis and aneuploidy in Schizosaccharomyces pombe: an unstable aneuploid disomic for chromosome III
-
Niwa, O., and M. Yanagida, 1985 Triploid meiosis and aneuploidy in Schizosaccharomyces pombe: an unstable aneuploid disomic for chromosome III. Curr. Genet. 9: 463-470.
-
(1985)
Curr. Genet.
, vol.9
, pp. 463-470
-
-
Niwa, O.1
Yanagida, M.2
-
53
-
-
33751306051
-
Growth arrest and chromosome instability in aneuploid yeast
-
Niwa, O., Y. Tange, and A. Kurabayashi, 2006 Growth arrest and chromosome instability in aneuploid yeast. Yeast 23: 937-950.
-
(2006)
Yeast
, vol.23
, pp. 937-950
-
-
Niwa, O.1
Tange, Y.2
Kurabayashi, A.3
-
54
-
-
84870627323
-
Genomic evidence for elevated mutation rates in highly expressed genes
-
Park, C., W. Qian, and J. Zhang, 2012 Genomic evidence for elevated mutation rates in highly expressed genes. EMBO Rep. 13: 1123-1129.
-
(2012)
EMBO Rep.
, vol.13
, pp. 1123-1129
-
-
Park, C.1
Qian, W.2
Zhang, J.3
-
55
-
-
0021132637
-
5-Methylcytosine is not detectable in Saccharomyces cerevisiae DNA
-
Proffitt, J. H., J. R. Davie, D. Swinton, and S. Hattman, 1984 5-Methylcytosine is not detectable in Saccharomyces cerevisiae DNA. Mol. Cell. Biol. 4: 985-988.
-
(1984)
Mol. Cell. Biol.
, vol.4
, pp. 985-988
-
-
Proffitt, J.H.1
Davie, J.R.2
Swinton, D.3
Hattman, S.4
-
56
-
-
33751305569
-
Double and Hattman, 1984 5-Methylogous recombination in Schizosaccharomyces pombe.
-
Raji, H., and E. Hartsuiker, 2006 Double and S. Hattman, 1984 5-Methylogous recombination in Schizosaccharomyces pombe. Yeast 23: 963-976.
-
(2006)
Yeast
, vol.23
, pp. 963-976
-
-
Raji, H.1
Hartsuiker, E.2
-
57
-
-
84866440781
-
DELLY: structural variant discovery by integrated paired-end and split-read analysis
-
Rausch, T., T. Zichner, A. Schlattl, A. M. Stütz, V. Benes et al., 2012 DELLY: structural variant discovery by integrated paired-end and split-read analysis. Bioinformatics 28: i333-i339.
-
(2012)
Bioinformatics
, vol.28
, pp. i333-i339
-
-
Rausch, T.1
Zichner, T.2
Schlattl, A.3
Stütz, A.M.4
Benes, V.5
-
58
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J. T., H. Thorvaldsdóttir, W. Winckler, M. Guttman, E. S. Lander et al., 2011 Integrative genomics viewer. Nat. Biotechnol. 29: 24-26.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdóttir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
-
59
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers, pp
-
edited by S. Misener, and S. A. Krawetz. Humana Press, Totowa, NJ
-
Rozen, S., and H. Skaletsky, 1999 Primer3 on the WWW for general users and for biologist programmers, pp. 365-386 in Methods in Molecular Biology, Vol. 132: Bioinformatics methods and protocols, edited by S. Misener, and S. A. Krawetz. Humana Press, Totowa, NJ.
-
(1999)
in Methods in Molecular Biology, Bioinformatics methods and protocols
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
60
-
-
0032909165
-
The msh2 Gene of Schizosaccharomyces pombe Is Involved in Mismatch Repair, Mating-Type Switching, and Meiotic Chromosome Organization
-
Rudolph, C., C. Kunz, S. Parisi, E. Lehmann, E. Hartsuiker et al., 1999 The msh2 Gene of Schizosaccharomyces pombe Is Involved in Mismatch Repair, Mating-Type Switching, and Meiotic Chromosome Organization. Mol. Cell. Biol. 19: 241-250.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 241-250
-
-
Rudolph, C.1
Kunz, C.2
Parisi, S.3
Lehmann, E.4
Hartsuiker, E.5
-
61
-
-
84863495816
-
Fitness of Arabidopsis thaliana mutation accumulation lines whose spontaneous mutations are known
-
Rutter, M. T., A. Roles, J. K. Conner, R. G. Shaw, F. H. Shaw et al., 2012 Fitness of Arabidopsis thaliana mutation accumulation lines whose spontaneous mutations are known. Evolution 66: 2335-2339.
-
(2012)
Evolution
, vol.66
, pp. 2335-2339
-
-
Rutter, M.T.1
Roles, A.2
Conner, J.K.3
Shaw, R.G.4
Shaw, F.H.5
-
62
-
-
84867301449
-
Whole genome sequencing of mutation accumulation lines reveals a low mutation rate in the social amoeba Dictyostelium discoideum
-
Saxer, G., P. Havlak, S. A. Fox, M. A. Quance, S. Gupta et al., 2012 Whole genome sequencing of mutation accumulation lines reveals a low mutation rate in the social amoeba Dictyostelium discoideum. PLoS One 7: e46759.
-
(2012)
PLoS One
, vol.7
-
-
Saxer, G.1
Havlak, P.2
Fox, S.A.3
Quance, M.A.4
Gupta, S.5
-
64
-
-
79959340504
-
Pervasive multinucleotide mutational events in eukaryotes
-
Schrider, D. R., J. N. Hourmozdi, and M. W. Hahn, 2011 Pervasive multinucleotide mutational events in eukaryotes. Curr. Biol. 21: 1051- 1054.
-
(2011)
Curr. Biol.
, vol.21
, pp. 1051- 1054
-
-
Schrider, D.R.1
Hourmozdi, J.N.2
Hahn, M.W.3
-
65
-
-
0028358421
-
The rate of hydrolytic deamination of 5-methylcytosine in double-stranded DNA
-
Shen, J.-C., W. M. Rideout, and P. A. Jones, 1994 The rate of hydrolytic deamination of 5-methylcytosine in double-stranded DNA. Nucleic Acids Res. 22: 972-976.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 972-976
-
-
Shen, J.-C.1
Rideout, W.M.2
Jones, P.A.3
-
66
-
-
38049155945
-
Regulation of DNA double-strand break repair pathway choice
-
Shrivastav, M., L. P. De Haro, and J. A. Nickoloff, 2008 Regulation of DNA double-strand break repair pathway choice. Cell Res. 18: 134-147.
-
(2008)
Cell Res.
, vol.18
, pp. 134-147
-
-
Shrivastav, M.1
De Haro, L.P.2
Nickoloff, J.A.3
-
67
-
-
0017527790
-
Cell cycle of Saccharomyces cerevisiae in populations growing at different rates
-
Slater, M. L., S. O. Sharrow, and J. J. Gart, 1977 Cell cycle of Saccharomyces cerevisiae in populations growing at different rates. Proc. Natl. Acad. Sci. USA 74: 3850-3854.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 3850-3854
-
-
Slater, M.L.1
Sharrow, S.O.2
Gart, J.J.3
-
68
-
-
63449141981
-
Human mutation rate associated with DNA replication timing
-
Stamatoyannopoulos, J. A., I. Adzhubei, R. E. Thurman, G. V. Kryukov, S. M. Mirkin et al., 2009 Human mutation rate associated with DNA replication timing. Nat. Genet. 41: 393-395.
-
(2009)
Nat. Genet.
, vol.41
, pp. 393-395
-
-
Stamatoyannopoulos, J.A.1
Adzhubei, I.2
Thurman, R.E.3
Kryukov, V.G.4
Mirkin, S.M.5
-
69
-
-
0029024834
-
DNA synthesis errors associated with double-strand-break repair
-
Strathern, J. N., B. K. Shafer, and C. B. McGill, 1995 DNA synthesis errors associated with double-strand-break repair. Genetics 140: 965-972.
-
(1995)
Genetics
, vol.140
, pp. 965-972
-
-
Strathern, J.N.1
Shafer, B.K.2
McGill, C.B.3
-
70
-
-
84868599895
-
Drift-barrier hypothesis and mutation-rate evolution.
-
Sung, W., M. S. Ackerman, S. F. Miller, T. G. Doak, and M. Lynch, 2012a Drift-barrier hypothesis and mutation-rate evolution. Proc. Natl. Acad. Sci. USA 109: 18488-18492.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 18488-18492
-
-
Sung, W.1
Ackerman, M.S.2
Miller, S.F.3
Doak, T.G.4
Lynch, M.5
-
71
-
-
84868579284
-
Extraordinary genome stability in the ciliate Paramecium tetraurelia.
-
Sung, W., A. E. Tucker, T. G. Doak, E. Choi, W. K. Thomas et al., 2012b Extraordinary genome stability in the ciliate Paramecium tetraurelia. Proc. Natl. Acad. Sci. USA 109: 19339-19344.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 19339-19344
-
-
Sung, W.1
Tucker, A.E.2
Doak, T.G.3
Choi, E.4
Thomas, W.K.5
-
72
-
-
84865496959
-
Widespread existence of cytosine methylation in yeast DNA measured by gas chromatography/mass spectrometry
-
Tang, Y., X.-D. Gao, Y. Wang, B.-F. Yuan, and Y.-Q. Feng, 2012 Widespread existence of cytosine methylation in yeast DNA measured by gas chromatography/mass spectrometry. Anal. Chem. 84: 7249-7255.
-
(2012)
Anal. Chem.
, vol.84
, pp. 7249-7255
-
-
Tang, Y.1
Gao, X.-D.2
Wang, Y.3
Yuan, B.-F.4
Feng, Y.-Q.5
-
73
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell, C., L. Pachter, and S. L. Salzberg, 2009 TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
74
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C., B. A. Williams, G. Pertea, A. Mortazavi, G. Kwan et al., 2010 Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28: 511-515.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
-
75
-
-
25144494777
-
Intragenic tandem repeats generate functional variability
-
Verstrepen, K. J., A. Jansen, F. Lewitter, and G. R. Fink, 2005 Intragenic tandem repeats generate functional variability. Nat. Genet. 37: 986-990.
-
(2005)
Nat. Genet.
, vol.37
, pp. 986-990
-
-
Verstrepen, K.J.1
Jansen, A.2
Lewitter, F.3
Fink, G.R.4
-
76
-
-
0028963301
-
The fission yeast gene pmt1+ encodes a DNA methyltransferase homologue
-
Wilkinson, C. R. M., R. Bartlett, P. Nurse, and A. P. Bird, 1995 The fission yeast gene pmt1+ encodes a DNA methyltransferase homologue. Nucleic Acids Res. 23: 203-210.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 203-210
-
-
Wilkinson, C.R.M.1
Bartlett, R.2
Nurse, P.3
Bird, A.P.4
-
77
-
-
0037148758
-
The genome sequence of Schizosaccharomyces pombe
-
Wood, V., R. Gwilliam, M.-A. Rajandream, M. Lyne, R. Lyne et al., 2002 The genome sequence of Schizosaccharomyces pombe. Nature 415: 871-880.
-
(2002)
Nature
, vol.415
, pp. 871-880
-
-
Wood, V.1
Gwilliam, R.2
Rajandream, M.-A.3
Lyne, M.4
Lyne, R.5
-
78
-
-
84858305675
-
PomBase: a comprehensive online resource for fission yeast
-
Wood, V., M. A. Harris, M. D. McDowall, K. Rutherford, B. W. Vaughan et al., 2011 PomBase: a comprehensive online resource for fission yeast. Nucleic Acids Res. 40: D695-D699.
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. D695-D699
-
-
Wood, V.1
Harris, M.A.2
McDowall, M.D.3
Rutherford, K.4
Vaughan, B.W.5
-
79
-
-
84901824457
-
Precise estimates of mutation rate and spectrum in yeast
-
Zhu, Y. O., M. L. Siegal, D. W. Hall, and D. A. Petrov, 2014 Precise estimates of mutation rate and spectrum in yeast. Proc. Natl. Acad. Sci. USA 111: E2310-E2318.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. E2310-E2318
-
-
Zhu, Y.O.1
Siegal, M.L.2
Hall, D.W.3
Petrov, D.A.4
|