Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis

Genetics

Volumn 164, Issue 2, 2003, Pages 731-740

  Greene, Elizabeth A ^a   Codomo, Christine A ^a   Taylor, Nicholas E ^a   Henikoff, Jorja G ^a   Till, Bradley J ^a   Reynolds, Steven H ^c   Enns, Linda C ^c   Burtner, Chris ^c   Johnson, Jessica E ^c   Odden, Anthony R ^a   Comai, Luca ^c   Henikoff, Steven ^a,b  

^a Fred Hutchinson Cancer Research Center   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^c UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; GUANINE; MESYLIC ACID ETHYL ESTER; MUTAGENIC AGENT; PLANT DNA;

ALKYLATION; ARABIDOPSIS; ARTICLE; BIOLOGICAL MODEL; DRUG EFFECT; GENE; GENE DELETION; GENETIC SCREENING; GENETICS; GENOME; HETEROZYGOTE; HOMOZYGOTE; MISMATCH REPAIR; MISSENSE MUTATION; MUTAGENESIS; MUTATION; NONHUMAN; NUCLEOTIDE REPEAT; PHENOTYPE; PLANT GENETICS; PRIORITY JOURNAL;

ARABIDOPSIS; DNA, PLANT; ETHYL METHANESULFONATE; GENE DELETION; GENES, PLANT; GENETIC SCREENING; GENOME, PLANT; HETEROZYGOTE; HOMOZYGOTE; MODELS, GENETIC; MUTAGENESIS; MUTAGENS; MUTATION; MUTATION, MISSENSE; REPETITIVE SEQUENCES, NUCLEIC ACID;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 10744225138     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (27)

1. ASHBURNER, M., 1990 Drosophila: A Laboratory Handbook. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
2. BENTLEY, A., B. MACLENNAN, J. CALVO and C. R. DEAROLF, 2000 Targeted recovery of mutations in Drosophila. Genetics 156: 1169-1173.
3. COLBERT, T., B. J. TILL, R. TOMPA, S. REYNOLDS, M. N. STEINE et al., 2001 High-throughput screening for induced point mutations. Plant Physiol. 126: 480-484.
4. CULLIGAN, K. M., and J. B. HAYS, 2000 Arabidopsis MutS homologs - AtMSH2, AtMSH3, AtMSH6, and a novel AtMSH7 - form three distinct protein heterodimers with different specificities for mismatched DNA. Plant Cell 12: 991-1002.
5. DANY, A. L., and A. TISSIER, 2001 A functional OGG1 homologue from Arabiodopsis thaliana. Mol. Gen. Genet. 265: 293-301.
6. GARCIA-ORTIZ, M. V., R. R. ARIZA and T. ROLDAN-ARJONA, 2001 An OGG1 orthologue encoding a functional 8-oxoguanine DNA glycosylase/lyase in Arabidopsis thaliana. Plant Mol. Biol. 47: 795-804.
7. HAUGHN, G., and C. R. SOMERVILLE, 1987 Selection for herbicide resistance at the whole-plant level, pp. 98-107 in Applications of Biotechnology to Agricultural Chemistry, edited by H. M. LEBARON, R. O. MUMMA, R. C. HONEYCUTT and J. H. DUESING. American Chemical Society, Easton, PA.
8. HENIKOFF, S., and L. COMAI, 2003 Single-nucleotide mutations for plant functional genomics. Annu. Rev. Plant Biol. 54: 375-401.
9. JANDER, G., S. R. BAERSON, J. A. HUDAK, K. A. GONZALEZ, K. J. GRUYS et al., 2003 Ethylmethanesulfonate saturation mutagenesis in Arabidopsis to determine frequency of herbicide resistance. Plant Physiol. 131: 139-146.
10. KOORNNEEF, M., 1994 Arabidopsis genetics, pp. 89-120 in Arabidopsis, edited by E. M. MEYEROWITZ and C. R. SOMERVILLE. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
11. KOVALCHUK, I., O. KOVALCHUK and B. HOHN, 2000 Genome-wide variation of the somatic mutation frequency in transgenic plants. EMBO J. 19: 4431-4438.
12. KWOK, P. Y., 2001 Methods for genotyping single nucleotide polymorphisms. Annu. Rev. Genomics Hum. Genet. 2: 235-258.
13. LI, Q., Z. LIU, H. MONROE and C. T. CULIAT, 2002 Integrated platform for detection of DNA sequence variants using capillary array electrophoresis. Electrophoresis 23: 1499-1511.
14. MARSISCHKY, G. T., and R. D. KOLODNER, 1999 Biochemical characterization of the interaction between the Saccharomyces cerevisiae MSH2-MSH6 complex and mispaired bases in DNA. J. Biol. Chem. 274: 26668-26682.
15. MCCALLUM, C. M., L. COMAI, E. A. GREENE and S. HENIKOFF, 2000 Targeted screening for induced mutations. Nat. Biotechnol. 18: 455-457.
16. MULLER, H. J., 1930 Types of visible variations induced by X-rays in Drosophila. J. Genet. 22: 299-334.
17. NICKERSON, D. A., N. KOLKER, S. L. TAYLOR and M. J. RIEDER, 2001 Sequence-based detection of single nucleotide polymorphism. Methods Mol. Biol. 175: 29-35.
18. OLEVKOWSKI, C. A., C. R. BRONSON MULLINS, A. K. GODWIN and A. T. YEUNG, 1998 Mutation detection using a novel plant endonuclease. Nucleic Acids Res. 26: 4597-4602.
19. ROZEN, S., and H. SKALETSKY, 2000 Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132: 365-386.
20. SHI, H., M. ISHITANI, C. KIM and J. K. ZHU, 2000 The Arabidopsis thaliana salt tolerance gene SOS1 encodes a putative Na+/H+ antiporter. Proc. Natl. Acad. Sci. USA 97: 6896-6901.
21. SPIEGELMAN, J. I., M. N. MINDRINOS and P. J. OEFNER, 2000 High-accuracy DNA sequence variation screening by DHPLC. Biotechniques 29: 1084-1090.
22. TILL, B. J., T. COLBERT, R. TOMPA, L. ENNS, C. CODOMO et al., 2003a High-throughput TILLING for functional genomics, pp. 205-220 in Plant Functional Genomics: Methods and Protocols, edited by E. GROTEWALD. Humana Press, Clifton, NJ.
23. TILL, B. J., S. H. REYNOLDS, E. A. GREENE, C. A. CODOMO, L. C. ENNS et al., 2003b Large-scale discovery of induced point mutations with high throughput TILLING. Genome Res. 13: 524-530.
24. TUTEJA, N., M. B. SINGH, M. K. MISRA, P. L. BHALLA and R. TUTEJA, 2001 Molecular mechanisms of DNA damage and repair: progress in plants. Crit. Rev. Biochem. Mol. Biol. 36: 337-397.
25. VIDAL, A., N. ABRIL and C. PUEYO, 1995 DNA repair by Ogt alkyl-transferase influences EMS mutational specificity. Carcinogenesis 16: 817-821.
26. WEIGEIL, C., J. ALVAREZ, D. R. SMYTH, M. F. YANOFSKY and E. M. MEYEROWITZ, 1992 LEAFY controls floral meristem identity in Arabidopsis. Cell 69: 843-859.
27. WIENHOLDS, E., S. SCHULTE-MERKER, B. WALDERICH and R. H. PLASTERK, 2002 Target-selected inactivation of the zebrafish rag1 gene. Science 297: 99-102.