-
1
-
-
84925284068
-
Discovery and annotation of long noncoding RNAs
-
Mattick J.S., Rinn J.L. Discovery and annotation of long noncoding RNAs. Nat. Struct. Mol. Biol. 2015, 22:5-7.
-
(2015)
Nat. Struct. Mol. Biol.
, vol.22
, pp. 5-7
-
-
Mattick, J.S.1
Rinn, J.L.2
-
2
-
-
84946013175
-
LncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs
-
Quek X.C., Thomson D.W., Maag J.L., Bartonicek N., Signal B., Clark M.B., Gloss B.S., Dinger M.E. lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs. Nucleic Acids Res. 2015, 43:D168-D173.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D168-D173
-
-
Quek, X.C.1
Thomson, D.W.2
Maag, J.L.3
Bartonicek, N.4
Signal, B.5
Clark, M.B.6
Gloss, B.S.7
Dinger, M.E.8
-
3
-
-
84883769504
-
Rise of the RNA machines: exploring the structure of long non-coding RNAs
-
Novikova I.V., Hennelly S.P., Tung C.S., Sanbonmatsu K.Y. Rise of the RNA machines: exploring the structure of long non-coding RNAs. J. Mol. Biol. 2013, 425:3731-3746.
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 3731-3746
-
-
Novikova, I.V.1
Hennelly, S.P.2
Tung, C.S.3
Sanbonmatsu, K.Y.4
-
4
-
-
78651335915
-
The RNA Modification Database, RNAMDB: 2011 update
-
Cantara W.A., Crain P.F., Rozenski J., McCloskey J.A., Harris K.A., Zhang X., Vendeix F.A., Fabris D., Agris P.F. The RNA Modification Database, RNAMDB: 2011 update. Nucleic Acids Res. 2011, 39:D195-D201.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D195-D201
-
-
Cantara, W.A.1
Crain, P.F.2
Rozenski, J.3
McCloskey, J.A.4
Harris, K.A.5
Zhang, X.6
Vendeix, F.A.7
Fabris, D.8
Agris, P.F.9
-
5
-
-
84875692043
-
MODOMICS: a database of RNA modification pathways-2013 update
-
Machnicka M.A., Milanowska K., Osman Oglou O., Purta E., Kurkowska M., Olchowik A., Januszewski W., Kalinowski S., Dunin-Horkawicz S., Rother K.M., Helm M., Bujnicki J.M., Grosjean H. MODOMICS: a database of RNA modification pathways-2013 update. Nucleic Acids Res. 2013, 41:D262-D267.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D262-D267
-
-
Machnicka, M.A.1
Milanowska, K.2
Osman Oglou, O.3
Purta, E.4
Kurkowska, M.5
Olchowik, A.6
Januszewski, W.7
Kalinowski, S.8
Dunin-Horkawicz, S.9
Rother, K.M.10
Helm, M.11
Bujnicki, J.M.12
Grosjean, H.13
-
6
-
-
85027958937
-
The birth of the epitranscriptome: deciphering the function of RNA modifications
-
Saletore Y., Meyer K., Korlach J., Vilfan I.D., Jaffrey S., Mason C.E. The birth of the epitranscriptome: deciphering the function of RNA modifications. Genome Biol. 2012, 13:175.
-
(2012)
Genome Biol.
, vol.13
, pp. 175
-
-
Saletore, Y.1
Meyer, K.2
Korlach, J.3
Vilfan, I.D.4
Jaffrey, S.5
Mason, C.E.6
-
7
-
-
84904412679
-
Role of RNA methyltransferases in tissue renewal and pathology
-
Blanco S., Frye M. Role of RNA methyltransferases in tissue renewal and pathology. Curr. Opin. Cell Biol. 2014, 31:1-7.
-
(2014)
Curr. Opin. Cell Biol.
, vol.31
, pp. 1-7
-
-
Blanco, S.1
Frye, M.2
-
8
-
-
84908869950
-
An expanding universe of mRNA modifications
-
Jaffrey S.R. An expanding universe of mRNA modifications. Nat. Struct. Mol. Biol. 2014, 21:945-946.
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 945-946
-
-
Jaffrey, S.R.1
-
9
-
-
84884418135
-
Emerging roles for ribonucleoprotein modification and remodeling in controlling RNA fate
-
Lee S.R., Lykke-Andersen J. Emerging roles for ribonucleoprotein modification and remodeling in controlling RNA fate. Trends Cell Biol. 2013, 23:504-510.
-
(2013)
Trends Cell Biol.
, vol.23
, pp. 504-510
-
-
Lee, S.R.1
Lykke-Andersen, J.2
-
10
-
-
0028096611
-
High sensitivity mapping of methylated cytosines
-
Clark S.J., Harrison J., Paul C.L., Frommer M. High sensitivity mapping of methylated cytosines. Nucleic Acids Res. 1994, 22:2990-2997.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2990-2997
-
-
Clark, S.J.1
Harrison, J.2
Paul, C.L.3
Frommer, M.4
-
12
-
-
84860751168
-
Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
-
Squires J.E., Patel H.R., Nousch M., Sibbritt T., Humphreys D.T., Parker B.J., Suter C.M., Preiss T. Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA. Nucleic Acids Res. 2012, 40:5023-5033.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5023-5033
-
-
Squires, J.E.1
Patel, H.R.2
Nousch, M.3
Sibbritt, T.4
Humphreys, D.T.5
Parker, B.J.6
Suter, C.M.7
Preiss, T.8
-
13
-
-
84944474719
-
Nucleotide-level profiling of m5C RNA methylation
-
Sibbritt T., Shafik A., Clark S.J., Preiss T. Nucleotide-level profiling of m5C RNA methylation. Methods Mol. Biol. 2016, 1358:269-284.
-
(2016)
Methods Mol. Biol.
, vol.1358
, pp. 269-284
-
-
Sibbritt, T.1
Shafik, A.2
Clark, S.J.3
Preiss, T.4
-
14
-
-
84866074106
-
RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis
-
Tuorto F., Liebers R., Musch T., Schaefer M., Hofmann S., Kellner S., Frye M., Helm M., Stoecklin G., Lyko F. RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis. Nat. Struct. Mol. Biol. 2012, 19:900-905.
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 900-905
-
-
Tuorto, F.1
Liebers, R.2
Musch, T.3
Schaefer, M.4
Hofmann, S.5
Kellner, S.6
Frye, M.7
Helm, M.8
Stoecklin, G.9
Lyko, F.10
-
15
-
-
77749277177
-
The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing
-
Huang Y., Pastor W.A., Shen Y., Tahiliani M., Liu D.R., Rao A. The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing. PLoS One 2010, 5.
-
(2010)
PLoS One
, vol.5
-
-
Huang, Y.1
Pastor, W.A.2
Shen, Y.3
Tahiliani, M.4
Liu, D.R.5
Rao, A.6
-
16
-
-
84877350071
-
Identification of direct targets and modified bases of RNA cytosine methyltransferases
-
Khoddami V., Cairns B.R. Identification of direct targets and modified bases of RNA cytosine methyltransferases. Nat. Biotechnol. 2013, 31:458-464.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 458-464
-
-
Khoddami, V.1
Cairns, B.R.2
-
17
-
-
84893233686
-
Transcriptome-wide target profiling of RNA cytosine methyltransferases using the mechanism-based enrichment procedure Aza-IP
-
Khoddami V., Cairns B.R. Transcriptome-wide target profiling of RNA cytosine methyltransferases using the mechanism-based enrichment procedure Aza-IP. Nat. Protoc. 2014, 9:337-361.
-
(2014)
Nat. Protoc.
, vol.9
, pp. 337-361
-
-
Khoddami, V.1
Cairns, B.R.2
-
18
-
-
84894233636
-
ICLIP: protein-RNA interactions at nucleotide resolution
-
Huppertz I., Attig J., D'Ambrogio A., Easton L.E., Sibley C.R., Sugimoto Y., Tajnik M., Konig J., Ule J. iCLIP: protein-RNA interactions at nucleotide resolution. Methods 2014, 65:274-287.
-
(2014)
Methods
, vol.65
, pp. 274-287
-
-
Huppertz, I.1
Attig, J.2
D'Ambrogio, A.3
Easton, L.E.4
Sibley, C.R.5
Sugimoto, Y.6
Tajnik, M.7
Konig, J.8
Ule, J.9
-
19
-
-
84888791449
-
Characterizing 5-methylcytosine in the mammalian epitranscriptome
-
Hussain S., Aleksic J., Blanco S., Dietmann S., Frye M. Characterizing 5-methylcytosine in the mammalian epitranscriptome. Genome Biol. 2013, 14:215.
-
(2013)
Genome Biol.
, vol.14
, pp. 215
-
-
Hussain, S.1
Aleksic, J.2
Blanco, S.3
Dietmann, S.4
Frye, M.5
-
20
-
-
84862649489
-
Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons
-
Meyer K.D., Saletore Y., Zumbo P., Elemento O., Mason C.E., Jaffrey S.R. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell 2012, 149:1635-1646.
-
(2012)
Cell
, vol.149
, pp. 1635-1646
-
-
Meyer, K.D.1
Saletore, Y.2
Zumbo, P.3
Elemento, O.4
Mason, C.E.5
Jaffrey, S.R.6
-
21
-
-
84860779086
-
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
-
Dominissini D., Moshitch-Moshkovitz S., Schwartz S., Salmon-Divon M., Ungar L., Osenberg S., Cesarkas K., Jacob-Hirsch J., Amariglio N., Kupiec M., Sorek R., Rechavi G. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature 2012, 485:201-206.
-
(2012)
Nature
, vol.485
, pp. 201-206
-
-
Dominissini, D.1
Moshitch-Moshkovitz, S.2
Schwartz, S.3
Salmon-Divon, M.4
Ungar, L.5
Osenberg, S.6
Cesarkas, K.7
Jacob-Hirsch, J.8
Amariglio, N.9
Kupiec, M.10
Sorek, R.11
Rechavi, G.12
-
22
-
-
84899586607
-
The dynamic epitranscriptome: N6-methyladenosine and gene expression control
-
Meyer K.D., Jaffrey S.R. The dynamic epitranscriptome: N6-methyladenosine and gene expression control. Nat. Rev. Mol. Cell Biol. 2014, 15:313-326.
-
(2014)
Nat. Rev. Mol. Cell Biol.
, vol.15
, pp. 313-326
-
-
Meyer, K.D.1
Jaffrey, S.R.2
-
23
-
-
84898814417
-
Gene expression regulation mediated through reversible m(6)A RNA methylation
-
Fu Y., Dominissini D., Rechavi G., He C. Gene expression regulation mediated through reversible m(6)A RNA methylation. Nat. Rev. Genet. 2014, 15:293-306.
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 293-306
-
-
Fu, Y.1
Dominissini, D.2
Rechavi, G.3
He, C.4
-
24
-
-
0014340979
-
1-Methyladenosine. Dimroth rearrangement and reversible reduction
-
Macon J.B., Wolfenden R. 1-Methyladenosine. Dimroth rearrangement and reversible reduction. Biochemistry 1968, 7:3453-3458.
-
(1968)
Biochemistry
, vol.7
, pp. 3453-3458
-
-
Macon, J.B.1
Wolfenden, R.2
-
25
-
-
84895813879
-
Method for site-specific detection of m6A nucleoside presence in RNA based on high-resolution melting (HRM) analysis
-
Golovina A.Y., Dzama M.M., Petriukov K.S., Zatsepin T.S., Sergiev P.V., Bogdanov A.A., Dontsova O.A. Method for site-specific detection of m6A nucleoside presence in RNA based on high-resolution melting (HRM) analysis. Nucleic Acids Res. 2014, 42.
-
(2014)
Nucleic Acids Res.
, vol.42
-
-
Golovina, A.Y.1
Dzama, M.M.2
Petriukov, K.S.3
Zatsepin, T.S.4
Sergiev, P.V.5
Bogdanov, A.A.6
Dontsova, O.A.7
-
26
-
-
84888423912
-
Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA
-
Liu N., Parisien M., Dai Q., Zheng G., He C., Pan T. Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA. RNA 2013, 19:1848-1856.
-
(2013)
RNA
, vol.19
, pp. 1848-1856
-
-
Liu, N.1
Parisien, M.2
Dai, Q.3
Zheng, G.4
He, C.5
Pan, T.6
-
27
-
-
46749136340
-
Mass spectrometry of the fifth nucleoside: a review of the identification of pseudouridine in nucleic acids
-
Durairaj A., Limbach P.A. Mass spectrometry of the fifth nucleoside: a review of the identification of pseudouridine in nucleic acids. Anal. Chim. Acta 2008, 623:117-125.
-
(2008)
Anal. Chim. Acta
, vol.623
, pp. 117-125
-
-
Durairaj, A.1
Limbach, P.A.2
-
28
-
-
80052650209
-
Mass spectrometry-based quantification of pseudouridine in RNA
-
Addepalli B., Limbach P.A. Mass spectrometry-based quantification of pseudouridine in RNA. J. Am. Soc. Mass Spectrom. 2011, 22:1363-1372.
-
(2011)
J. Am. Soc. Mass Spectrom.
, vol.22
, pp. 1363-1372
-
-
Addepalli, B.1
Limbach, P.A.2
-
29
-
-
79959740430
-
Identification, localization, and relative quantitation of pseudouridine in RNA by tandem mass spectrometry of hydrolysis products
-
Taucher M., Ganisl B., Breuker K. Identification, localization, and relative quantitation of pseudouridine in RNA by tandem mass spectrometry of hydrolysis products. Int. J. Mass Spectrom. 2011, 304:91-97.
-
(2011)
Int. J. Mass Spectrom.
, vol.304
, pp. 91-97
-
-
Taucher, M.1
Ganisl, B.2
Breuker, K.3
-
30
-
-
0027438034
-
Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique
-
Bakin A., Ofengand J. Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique. Biochemistry 1993, 32:9754-9762.
-
(1993)
Biochemistry
, vol.32
, pp. 9754-9762
-
-
Bakin, A.1
Ofengand, J.2
-
31
-
-
0014172260
-
The reversible chemical modification of uracil, thymine, and guanine nucleotides and the modification of the action of ribonuclease on ribonucleic acid
-
Ho N.W., Gilham P.T. The reversible chemical modification of uracil, thymine, and guanine nucleotides and the modification of the action of ribonuclease on ribonucleic acid. Biochemistry 1967, 6:3632-3639.
-
(1967)
Biochemistry
, vol.6
, pp. 3632-3639
-
-
Ho, N.W.1
Gilham, P.T.2
-
32
-
-
0035721651
-
Mapping pseudouridines in RNA molecules
-
Ofengand J., Del Campo M., Kaya Y. Mapping pseudouridines in RNA molecules. Methods 2001, 25:365-373.
-
(2001)
Methods
, vol.25
, pp. 365-373
-
-
Ofengand, J.1
Del Campo, M.2
Kaya, Y.3
-
33
-
-
84907527348
-
Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA
-
Schwartz S., Bernstein D.A., Mumbach M.R., Jovanovic M., Herbst R.H., Leon-Ricardo B.X., Engreitz J.M., Guttman M., Satija R., Lander E.S., Fink G., Regev A. Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA. Cell 2014, 159:148-162.
-
(2014)
Cell
, vol.159
, pp. 148-162
-
-
Schwartz, S.1
Bernstein, D.A.2
Mumbach, M.R.3
Jovanovic, M.4
Herbst, R.H.5
Leon-Ricardo, B.X.6
Engreitz, J.M.7
Guttman, M.8
Satija, R.9
Lander, E.S.10
Fink, G.11
Regev, A.12
-
34
-
-
84922180958
-
Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
-
Carlile T.M., Rojas-Duran M.F., Zinshteyn B., Shin H., Bartoli K.M., Gilbert W.V. Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells. Nature 2014, 515:143-146.
-
(2014)
Nature
, vol.515
, pp. 143-146
-
-
Carlile, T.M.1
Rojas-Duran, M.F.2
Zinshteyn, B.3
Shin, H.4
Bartoli, K.M.5
Gilbert, W.V.6
-
35
-
-
84908626586
-
Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae
-
Lovejoy A.F., Riordan D.P., Brown P.O. Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae. PLoS One 2014, 9.
-
(2014)
PLoS One
, vol.9
-
-
Lovejoy, A.F.1
Riordan, D.P.2
Brown, P.O.3
-
36
-
-
84937514684
-
Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome
-
Li X., Zhu P., Ma S., Song J., Bai J., Sun F., Yi C. Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome. Nat. Chem. Biol. 2015, 11:592-597.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 592-597
-
-
Li, X.1
Zhu, P.2
Ma, S.3
Song, J.4
Bai, J.5
Sun, F.6
Yi, C.7
-
38
-
-
84965163425
-
A-to-I RNA editing: current knowledge sources and computational approaches with special emphasis on non-coding RNA molecules
-
Nigita G., Veneziano D., Ferro A. A-to-I RNA editing: current knowledge sources and computational approaches with special emphasis on non-coding RNA molecules. Front Bioeng Biotechnol. 2015, 3:37.
-
(2015)
Front Bioeng Biotechnol.
, vol.3
, pp. 37
-
-
Nigita, G.1
Veneziano, D.2
Ferro, A.3
-
39
-
-
84855320189
-
Accurate identification of A-to-I RNA editing in human by transcriptome sequencing
-
Bahn J.H., Lee J.H., Li G., Greer C., Peng G., Xiao X. Accurate identification of A-to-I RNA editing in human by transcriptome sequencing. Genome Res. 2012, 22:142-150.
-
(2012)
Genome Res.
, vol.22
, pp. 142-150
-
-
Bahn, J.H.1
Lee, J.H.2
Li, G.3
Greer, C.4
Peng, G.5
Xiao, X.6
-
40
-
-
84858328300
-
Comment on "widespread RNA and DNA sequence differences in the human transcriptome"
-
(author reply 1302)
-
Kleinman C.L., Majewski J. Comment on "widespread RNA and DNA sequence differences in the human transcriptome". Science 2012, 335:1302. (author reply 1302).
-
(2012)
Science
, vol.335
, pp. 1302
-
-
Kleinman, C.L.1
Majewski, J.2
-
41
-
-
84858328300
-
Comment on "widespread RNA and DNA sequence differences in the human transcriptome"
-
(author reply 1302)
-
Lin W., Piskol R., Tan M.H., Li J.B. Comment on "widespread RNA and DNA sequence differences in the human transcriptome". Science 2012, 335:1302. (author reply 1302).
-
(2012)
Science
, vol.335
, pp. 1302
-
-
Lin, W.1
Piskol, R.2
Tan, M.H.3
Li, J.B.4
-
42
-
-
84858328300
-
Comment on "widespread RNA and DNA sequence differences in the human transcriptome"
-
(author reply 1302)
-
Pickrell J.K., Gilad Y., Pritchard J.K. Comment on "widespread RNA and DNA sequence differences in the human transcriptome". Science 2012, 335:1302. (author reply 1302).
-
(2012)
Science
, vol.335
, pp. 1302
-
-
Pickrell, J.K.1
Gilad, Y.2
Pritchard, J.K.3
-
43
-
-
75649089335
-
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
-
de Hoon M.J., Taft R.J., Hashimoto T., Kanamori-Katayama M., Kawaji H., Kawano M., Kishima M., Lassmann T., Faulkner G.J., Mattick J.S., Daub C.O., Carninci P., Kawai J., Suzuki H., Hayashizaki Y. Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Res. 2010, 20:257-264.
-
(2010)
Genome Res.
, vol.20
, pp. 257-264
-
-
de Hoon, M.J.1
Taft, R.J.2
Hashimoto, T.3
Kanamori-Katayama, M.4
Kawaji, H.5
Kawano, M.6
Kishima, M.7
Lassmann, T.8
Faulkner, G.J.9
Mattick, J.S.10
Daub, C.O.11
Carninci, P.12
Kawai, J.13
Suzuki, H.14
Hayashizaki, Y.15
-
44
-
-
84863229628
-
Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome
-
Peng Z., Cheng Y., Tan B.C., Kang L., Tian Z., Zhu Y., Zhang W., Liang Y., Hu X., Tan X., Guo J., Dong Z., Liang Y., Bao L., Wang J. Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome. Nat. Biotechnol. 2012, 30:253-260.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 253-260
-
-
Peng, Z.1
Cheng, Y.2
Tan, B.C.3
Kang, L.4
Tian, Z.5
Zhu, Y.6
Zhang, W.7
Liang, Y.8
Hu, X.9
Tan, X.10
Guo, J.11
Dong, Z.12
Liang, Y.13
Bao, L.14
Wang, J.15
-
45
-
-
84873414540
-
Identifying RNA editing sites using RNA sequencing data alone
-
Ramaswami G., Zhang R., Piskol R., Keegan L.P., Deng P., O'Connell M.A., Li J.B. Identifying RNA editing sites using RNA sequencing data alone. Nat. Methods 2013, 10:128-132.
-
(2013)
Nat. Methods
, vol.10
, pp. 128-132
-
-
Ramaswami, G.1
Zhang, R.2
Piskol, R.3
Keegan, L.P.4
Deng, P.5
O'Connell, M.A.6
Li, J.B.7
-
46
-
-
77954505224
-
DARNED: a DAtabase of RNa EDiting in humans
-
Kiran A., Baranov P.V. DARNED: a DAtabase of RNa EDiting in humans. Bioinformatics 2010, 26:1772-1776.
-
(2010)
Bioinformatics
, vol.26
, pp. 1772-1776
-
-
Kiran, A.1
Baranov, P.V.2
-
47
-
-
84885300845
-
Reliable identification of genomic variants from RNA-seq data
-
Piskol R., Ramaswami G., Li J.B. Reliable identification of genomic variants from RNA-seq data. Am. J. Hum. Genet. 2013, 93:641-651.
-
(2013)
Am. J. Hum. Genet.
, vol.93
, pp. 641-651
-
-
Piskol, R.1
Ramaswami, G.2
Li, J.B.3
-
48
-
-
28544447032
-
A method to find tissue-specific novel sites of selective adenosine deamination
-
Ohlson J., Enstero M., Sjoberg B.M., Ohman M. A method to find tissue-specific novel sites of selective adenosine deamination. Nucleic Acids Res. 2005, 33.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Ohlson, J.1
Enstero, M.2
Sjoberg, B.M.3
Ohman, M.4
-
49
-
-
34548575784
-
A method for finding sites of selective adenosine deamination
-
Ohlson J., Ohman M. A method for finding sites of selective adenosine deamination. Methods Enzymol. 2007, 424:289-300.
-
(2007)
Methods Enzymol.
, vol.424
, pp. 289-300
-
-
Ohlson, J.1
Ohman, M.2
-
50
-
-
84872564405
-
Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage
-
Cattenoz P.B., Taft R.J., Westhof E., Mattick J.S. Transcriptome-wide identification of A > I RNA editing sites by inosine specific cleavage. RNA 2013, 19:257-270.
-
(2013)
RNA
, vol.19
, pp. 257-270
-
-
Cattenoz, P.B.1
Taft, R.J.2
Westhof, E.3
Mattick, J.S.4
-
51
-
-
0030738705
-
Detection of inosine in messenger RNA by inosine-specific cleavage
-
Morse D.P., Bass B.L. Detection of inosine in messenger RNA by inosine-specific cleavage. Biochemistry 1997, 36:8429-8434.
-
(1997)
Biochemistry
, vol.36
, pp. 8429-8434
-
-
Morse, D.P.1
Bass, B.L.2
-
52
-
-
84869864633
-
A method to identify RNA A-to-I editing targets using I-specific cleavage and exon array analysis
-
Tseng C.N., Chang H.W., Stocker J., Wang H.C., Lu C.C., Wu C.H., Yang J.G., Cho C.L., Huang H.W. A method to identify RNA A-to-I editing targets using I-specific cleavage and exon array analysis. Mol. Cell. Probes 2013, 27:38-45.
-
(2013)
Mol. Cell. Probes
, vol.27
, pp. 38-45
-
-
Tseng, C.N.1
Chang, H.W.2
Stocker, J.3
Wang, H.C.4
Lu, C.C.5
Wu, C.H.6
Yang, J.G.7
Cho, C.L.8
Huang, H.W.9
-
53
-
-
77956897387
-
Inosine cyanoethylation identifies A-to-I RNA editing sites in the human transcriptome
-
Sakurai M., Yano T., Kawabata H., Ueda H., Suzuki T. Inosine cyanoethylation identifies A-to-I RNA editing sites in the human transcriptome. Nat. Chem. Biol. 2010, 6:733-740.
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 733-740
-
-
Sakurai, M.1
Yano, T.2
Kawabata, H.3
Ueda, H.4
Suzuki, T.5
-
54
-
-
84895523999
-
A biochemical landscape of A-to-I RNA editing in the human brain transcriptome
-
Sakurai M., Ueda H., Yano T., Okada S., Terajima H., Mitsuyama T., Toyoda A., Fujiyama A., Kawabata H., Suzuki T. A biochemical landscape of A-to-I RNA editing in the human brain transcriptome. Genome Res. 2014, 24:522-534.
-
(2014)
Genome Res.
, vol.24
, pp. 522-534
-
-
Sakurai, M.1
Ueda, H.2
Yano, T.3
Okada, S.4
Terajima, H.5
Mitsuyama, T.6
Toyoda, A.7
Fujiyama, A.8
Kawabata, H.9
Suzuki, T.10
-
55
-
-
31144449613
-
Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2
-
Goll M.G., Kirpekar F., Maggert K.A., Yoder J.A., Hsieh C.L., Zhang X., Golic K.G., Jacobsen S.E., Bestor T.H. Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science 2006, 311:395-398.
-
(2006)
Science
, vol.311
, pp. 395-398
-
-
Goll, M.G.1
Kirpekar, F.2
Maggert, K.A.3
Yoder, J.A.4
Hsieh, C.L.5
Zhang, X.6
Golic, K.G.7
Jacobsen, S.E.8
Bestor, T.H.9
-
56
-
-
33646552414
-
The RNA methyltransferase Misu (NSun2) mediates Myc-induced proliferation and is upregulated in tumors
-
Frye M., Watt F.M. The RNA methyltransferase Misu (NSun2) mediates Myc-induced proliferation and is upregulated in tumors. Curr. Biol. 2006, 16:971-981.
-
(2006)
Curr. Biol.
, vol.16
, pp. 971-981
-
-
Frye, M.1
Watt, F.M.2
-
57
-
-
84901741929
-
NSUN4 is a dual function mitochondrial protein required for both methylation of 12S rRNA and coordination of mitoribosomal assembly
-
Metodiev M.D., Spahr H., Loguercio Polosa P., Meharg C., Becker C., Altmueller J., Habermann B., Larsson N.G., Ruzzenente B. NSUN4 is a dual function mitochondrial protein required for both methylation of 12S rRNA and coordination of mitoribosomal assembly. PLoS Genet. 2014, 10.
-
(2014)
PLoS Genet.
, vol.10
-
-
Metodiev, M.D.1
Spahr, H.2
Loguercio Polosa, P.3
Meharg, C.4
Becker, C.5
Altmueller, J.6
Habermann, B.7
Larsson, N.G.8
Ruzzenente, B.9
-
58
-
-
84939839793
-
NSUN6 is a human RNA methyltransferase that catalyzes formation of m5C72 in specific tRNAs
-
Haag S., Warda A.S., Kretschmer J., Gunnigmann M.A., Hobartner C., Bohnsack M.T. NSUN6 is a human RNA methyltransferase that catalyzes formation of m5C72 in specific tRNAs. RNA 2015, 9:1532-1543.
-
(2015)
RNA
, vol.9
, pp. 1532-1543
-
-
Haag, S.1
Warda, A.S.2
Kretschmer, J.3
Gunnigmann, M.A.4
Hobartner, C.5
Bohnsack, M.T.6
-
59
-
-
77955884641
-
RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
-
Schaefer M., Pollex T., Hanna K., Tuorto F., Meusburger M., Helm M., Lyko F. RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev. 2010, 24:1590-1595.
-
(2010)
Genes Dev.
, vol.24
, pp. 1590-1595
-
-
Schaefer, M.1
Pollex, T.2
Hanna, K.3
Tuorto, F.4
Meusburger, M.5
Helm, M.6
Lyko, F.7
-
60
-
-
77950476036
-
5-Methylcytosine in RNA: detection, enzymatic formation and biological functions
-
Motorin Y., Lyko F., Helm M. 5-Methylcytosine in RNA: detection, enzymatic formation and biological functions. Nucleic Acids Res. 2010, 38:1415-1430.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 1415-1430
-
-
Motorin, Y.1
Lyko, F.2
Helm, M.3
-
61
-
-
84860741715
-
Mutations in NSUN2 cause autosomal-recessive intellectual disability
-
Abbasi-Moheb L., Mertel S., Gonsior M., Nouri-Vahid L., Kahrizi K., Cirak S., Wieczorek D., Motazacker M.M., Esmaeeli-Nieh S., Cremer K., Weissmann R., Tzschach A., Garshasbi M., Abedini S.S., Najmabadi H., Ropers H.H., Sigrist S.J., Kuss A.W. Mutations in NSUN2 cause autosomal-recessive intellectual disability. Am. J. Hum. Genet. 2012, 90:847-855.
-
(2012)
Am. J. Hum. Genet.
, vol.90
, pp. 847-855
-
-
Abbasi-Moheb, L.1
Mertel, S.2
Gonsior, M.3
Nouri-Vahid, L.4
Kahrizi, K.5
Cirak, S.6
Wieczorek, D.7
Motazacker, M.M.8
Esmaeeli-Nieh, S.9
Cremer, K.10
Weissmann, R.11
Tzschach, A.12
Garshasbi, M.13
Abedini, S.S.14
Najmabadi, H.15
Ropers, H.H.16
Sigrist, S.J.17
Kuss, A.W.18
-
62
-
-
0035736207
-
Characterization of two novel genes, WBSCR20 and WBSCR22, deleted in Williams-Beuren syndrome
-
Doll A., Grzeschik K.H. Characterization of two novel genes, WBSCR20 and WBSCR22, deleted in Williams-Beuren syndrome. Cytogenet. Cell Genet. 2001, 95:20-27.
-
(2001)
Cytogenet. Cell Genet.
, vol.95
, pp. 20-27
-
-
Doll, A.1
Grzeschik, K.H.2
-
63
-
-
34547447763
-
Sperm motility defects and infertility in male mice with a mutation in Nsun7, a member of the Sun domain-containing family of putative RNA methyltransferases
-
Harris T., Marquez B., Suarez S., Schimenti J. Sperm motility defects and infertility in male mice with a mutation in Nsun7, a member of the Sun domain-containing family of putative RNA methyltransferases. Biol. Reprod. 2007, 77:376-382.
-
(2007)
Biol. Reprod.
, vol.77
, pp. 376-382
-
-
Harris, T.1
Marquez, B.2
Suarez, S.3
Schimenti, J.4
-
64
-
-
84859168499
-
The tRNA methyltransferase NSun2 stabilizes p16INK(4) mRNA by methylating the 3'-untranslated region of p16
-
Zhang X., Liu Z., Yi J., Tang H., Xing J., Yu M., Tong T., Shang Y., Gorospe M., Wang W. The tRNA methyltransferase NSun2 stabilizes p16INK(4) mRNA by methylating the 3'-untranslated region of p16. Nat. Commun. 2012, 3:712.
-
(2012)
Nat. Commun.
, vol.3
, pp. 712
-
-
Zhang, X.1
Liu, Z.2
Yi, J.3
Tang, H.4
Xing, J.5
Yu, M.6
Tong, T.7
Shang, Y.8
Gorospe, M.9
Wang, W.10
-
65
-
-
70349652191
-
The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs
-
Persson H., Kvist A., Vallon-Christersson J., Medstrand P., Borg A., Rovira C. The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs. Nat. Cell Biol. 2009, 11:1268-1271.
-
(2009)
Nat. Cell Biol.
, vol.11
, pp. 1268-1271
-
-
Persson, H.1
Kvist, A.2
Vallon-Christersson, J.3
Medstrand, P.4
Borg, A.5
Rovira, C.6
-
66
-
-
84880791572
-
NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs
-
Hussain S., Sajini A.A., Blanco S., Dietmann S., Lombard P., Sugimoto Y., Paramor M., Gleeson J.G., Odom D.T., Ule J., Frye M. NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs. Cell Rep. 2013, 4:255-261.
-
(2013)
Cell Rep.
, vol.4
, pp. 255-261
-
-
Hussain, S.1
Sajini, A.A.2
Blanco, S.3
Dietmann, S.4
Lombard, P.5
Sugimoto, Y.6
Paramor, M.7
Gleeson, J.G.8
Odom, D.T.9
Ule, J.10
Frye, M.11
-
67
-
-
9244225692
-
Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa
-
Tycowski K.T., Aab A., Steitz J.A. Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa. Curr. Biol. 2004, 14:1985-1995.
-
(2004)
Curr. Biol.
, vol.14
, pp. 1985-1995
-
-
Tycowski, K.T.1
Aab, A.2
Steitz, J.A.3
-
68
-
-
33745123379
-
A role for the catalytic ribonucleoprotein RNase P in RNA polymerase III transcription
-
Reiner R., Ben-Asouli Y., Krilovetzky I., Jarrous N. A role for the catalytic ribonucleoprotein RNase P in RNA polymerase III transcription. Genes Dev. 2006, 20:1621-1635.
-
(2006)
Genes Dev.
, vol.20
, pp. 1621-1635
-
-
Reiner, R.1
Ben-Asouli, Y.2
Krilovetzky, I.3
Jarrous, N.4
-
69
-
-
78650444089
-
Archaeal/eukaryal RNase P: subunits, functions and RNA diversification
-
Jarrous N., Gopalan V. Archaeal/eukaryal RNase P: subunits, functions and RNA diversification. Nucleic Acids Res. 2010, 38:7885-7894.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 7885-7894
-
-
Jarrous, N.1
Gopalan, V.2
-
70
-
-
84894516032
-
Long non-coding RNAs as targets for cytosine methylation
-
Amort T., Souliere M.F., Wille A., Jia X.Y., Fiegl H., Worle H., Micura R., Lusser A. Long non-coding RNAs as targets for cytosine methylation. RNA Biol. 2013, 10:1003-1008.
-
(2013)
RNA Biol.
, vol.10
, pp. 1003-1008
-
-
Amort, T.1
Souliere, M.F.2
Wille, A.3
Jia, X.Y.4
Fiegl, H.5
Worle, H.6
Micura, R.7
Lusser, A.8
-
71
-
-
84938389092
-
LncRNA HOTAIR: a master regulator of chromatin dynamics and cancer
-
Bhan A., Mandal S.S. LncRNA HOTAIR: a master regulator of chromatin dynamics and cancer. Biochim. Biophys. Acta 2015, 1856:151-164.
-
(2015)
Biochim. Biophys. Acta
, vol.1856
, pp. 151-164
-
-
Bhan, A.1
Mandal, S.S.2
-
72
-
-
79960484375
-
Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation
-
Wutz A. Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation. Nat. Rev. Genet. 2011, 12:542-553.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 542-553
-
-
Wutz, A.1
-
73
-
-
55349109963
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
-
Zhao J., Sun B.K., Erwin J.A., Song J.J., Lee J.T. Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 2008, 322:750-756.
-
(2008)
Science
, vol.322
, pp. 750-756
-
-
Zhao, J.1
Sun, B.K.2
Erwin, J.A.3
Song, J.J.4
Lee, J.T.5
-
74
-
-
83855163995
-
Uncovering the role of 5-hydroxymethylcytosine in the epigenome
-
Branco M.R., Ficz G., Reik W. Uncovering the role of 5-hydroxymethylcytosine in the epigenome. Nat. Rev. Genet. 2012, 13:7-13.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 7-13
-
-
Branco, M.R.1
Ficz, G.2
Reik, W.3
-
75
-
-
84937204805
-
Epigenetic regulatory functions of DNA modifications: 5-methylcytosine and beyond
-
Breiling A., Lyko F. Epigenetic regulatory functions of DNA modifications: 5-methylcytosine and beyond. Epigenetics Chromatin 2015, 8:24.
-
(2015)
Epigenetics Chromatin
, vol.8
, pp. 24
-
-
Breiling, A.1
Lyko, F.2
-
76
-
-
84924918523
-
Formation and abundance of 5-hydroxymethylcytosine in RNA
-
Huber S.M., van Delft P., Mendil L., Bachman M., Smollett K., Werner F., Miska E.A., Balasubramanian S. Formation and abundance of 5-hydroxymethylcytosine in RNA. Chembiochem 2015, 16:752-755.
-
(2015)
Chembiochem
, vol.16
, pp. 752-755
-
-
Huber, S.M.1
van Delft, P.2
Mendil, L.3
Bachman, M.4
Smollett, K.5
Werner, F.6
Miska, E.A.7
Balasubramanian, S.8
-
77
-
-
84921714625
-
Transcriptome-wide N(6)-methyladenosine profiling of rice callus and leaf reveals the presence of tissue-specific competitors involved in selective mRNA modification
-
Li Y., Wang X., Li C., Hu S., Yu J., Song S. Transcriptome-wide N(6)-methyladenosine profiling of rice callus and leaf reveals the presence of tissue-specific competitors involved in selective mRNA modification. RNA Biol. 2014, 11:1180-1188.
-
(2014)
RNA Biol.
, vol.11
, pp. 1180-1188
-
-
Li, Y.1
Wang, X.2
Li, C.3
Hu, S.4
Yu, J.5
Song, S.6
-
78
-
-
84890107723
-
High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis
-
Schwartz S., Agarwala S.D., Mumbach M.R., Jovanovic M., Mertins P., Shishkin A., Tabach Y., Mikkelsen T.S., Satija R., Ruvkun G., Carr S.A., Lander E.S., Fink G.R., Regev A. High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis. Cell 2013, 155:1409-1421.
-
(2013)
Cell
, vol.155
, pp. 1409-1421
-
-
Schwartz, S.1
Agarwala, S.D.2
Mumbach, M.R.3
Jovanovic, M.4
Mertins, P.5
Shishkin, A.6
Tabach, Y.7
Mikkelsen, T.S.8
Satija, R.9
Ruvkun, G.10
Carr, S.A.11
Lander, E.S.12
Fink, G.R.13
Regev, A.14
-
79
-
-
84904035764
-
Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites
-
Schwartz S., Mumbach M.R., Jovanovic M., Wang T., Maciag K., Bushkin G.G., Mertins P., Ter-Ovanesyan D., Habib N., Cacchiarelli D., Sanjana N.E., Freinkman E., Pacold M.E., Satija R., Mikkelsen T.S., Hacohen N., Zhang F., Carr S.A., Lander E.S., Regev A. Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites. Cell Rep. 2014, 8:284-296.
-
(2014)
Cell Rep.
, vol.8
, pp. 284-296
-
-
Schwartz, S.1
Mumbach, M.R.2
Jovanovic, M.3
Wang, T.4
Maciag, K.5
Bushkin, G.G.6
Mertins, P.7
Ter-Ovanesyan, D.8
Habib, N.9
Cacchiarelli, D.10
Sanjana, N.E.11
Freinkman, E.12
Pacold, M.E.13
Satija, R.14
Mikkelsen, T.S.15
Hacohen, N.16
Zhang, F.17
Carr, S.A.18
Lander, E.S.19
Regev, A.20
more..
-
80
-
-
84924072927
-
N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions
-
Liu N., Dai Q., Zheng G., He C., Parisien M., Pan T. N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions. Nature 2015, 518:560-564.
-
(2015)
Nature
, vol.518
, pp. 560-564
-
-
Liu, N.1
Dai, Q.2
Zheng, G.3
He, C.4
Parisien, M.5
Pan, T.6
-
81
-
-
84892372347
-
N6-methyladenosine-dependent regulation of messenger RNA stability
-
Wang X., Lu Z., Gomez A., Hon G.C., Yue Y., Han D., Fu Y., Parisien M., Dai Q., Jia G., Ren B., Pan T., He C. N6-methyladenosine-dependent regulation of messenger RNA stability. Nature 2014, 505:117-120.
-
(2014)
Nature
, vol.505
, pp. 117-120
-
-
Wang, X.1
Lu, Z.2
Gomez, A.3
Hon, G.C.4
Yue, Y.5
Han, D.6
Fu, Y.7
Parisien, M.8
Dai, Q.9
Jia, G.10
Ren, B.11
Pan, T.12
He, C.13
-
82
-
-
84930621650
-
N(6)-methyladenosine modulates messenger RNA translation efficiency
-
Wang X., Zhao B.S., Roundtree I.A., Lu Z., Han D., Ma H., Weng X., Chen K., Shi H., He C. N(6)-methyladenosine modulates messenger RNA translation efficiency. Cell 2015, 161:1388-1399.
-
(2015)
Cell
, vol.161
, pp. 1388-1399
-
-
Wang, X.1
Zhao, B.S.2
Roundtree, I.A.3
Lu, Z.4
Han, D.5
Ma, H.6
Weng, X.7
Chen, K.8
Shi, H.9
He, C.10
-
83
-
-
84919342804
-
Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain
-
Xu C., Wang X., Liu K., Roundtree I.A., Tempel W., Li Y., Lu Z., He C., Min J. Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain. Nat. Chem. Biol. 2014, 10:927-929.
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 927-929
-
-
Xu, C.1
Wang, X.2
Liu, K.3
Roundtree, I.A.4
Tempel, W.5
Li, Y.6
Lu, Z.7
He, C.8
Min, J.9
-
84
-
-
84969255814
-
HEPeak: an HMM-based exome peak-finding package for RNA epigenome sequencing data
-
(S2)
-
Cui X., Meng J., Rao M.K., Chen Y., Huang Y. HEPeak: an HMM-based exome peak-finding package for RNA epigenome sequencing data. BMC Genomics 2015, 16(Suppl. 4). (S2).
-
(2015)
BMC Genomics
, vol.16
-
-
Cui, X.1
Meng, J.2
Rao, M.K.3
Chen, Y.4
Huang, Y.5
-
85
-
-
84873451950
-
The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells
-
Gutschner T., Hammerle M., Eissmann M., Hsu J., Kim Y., Hung G., Revenko A., Arun G., Stentrup M., Gross M., Zornig M., MacLeod A.R., Spector D.L., Diederichs S. The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Res. 2013, 73:1180-1189.
-
(2013)
Cancer Res.
, vol.73
, pp. 1180-1189
-
-
Gutschner, T.1
Hammerle, M.2
Eissmann, M.3
Hsu, J.4
Kim, Y.5
Hung, G.6
Revenko, A.7
Arun, G.8
Stentrup, M.9
Gross, M.10
Zornig, M.11
MacLeod, A.R.12
Spector, D.L.13
Diederichs, S.14
-
86
-
-
69449099275
-
MicroRNA-mediated messenger RNA deadenylation contributes to translational repression in mammalian cells
-
Beilharz T.H., Humphreys D.T., Clancy J.L., Thermann R., Martin D.I., Hentze M.W., Preiss T. microRNA-mediated messenger RNA deadenylation contributes to translational repression in mammalian cells. PLoS One 2009, 4.
-
(2009)
PLoS One
, vol.4
-
-
Beilharz, T.H.1
Humphreys, D.T.2
Clancy, J.L.3
Thermann, R.4
Martin, D.I.5
Hentze, M.W.6
Preiss, T.7
-
87
-
-
78751477191
-
Gene silencing by microRNAs: contributions of translational repression and mRNA decay
-
Huntzinger E., Izaurralde E. Gene silencing by microRNAs: contributions of translational repression and mRNA decay. Nat. Rev. Genet. 2011, 12:99-110.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 99-110
-
-
Huntzinger, E.1
Izaurralde, E.2
-
88
-
-
84904985459
-
Regulation of microRNA biogenesis
-
Ha M., Kim V.N. Regulation of microRNA biogenesis. Nat. Rev. Mol. Cell Biol. 2014, 15:509-524.
-
(2014)
Nat. Rev. Mol. Cell Biol.
, vol.15
, pp. 509-524
-
-
Ha, M.1
Kim, V.N.2
-
89
-
-
84925796024
-
N6-methyladenosine marks primary microRNAs for processing
-
Alarcón C.R., Lee H., Goodarzi H., Halberg N., Tavazoie S.F. N6-methyladenosine marks primary microRNAs for processing. Nature 2015, 519:482-485.
-
(2015)
Nature
, vol.519
, pp. 482-485
-
-
Alarcón, C.R.1
Lee, H.2
Goodarzi, H.3
Halberg, N.4
Tavazoie, S.F.5
-
90
-
-
84875514519
-
RNA pseudouridylation: new insights into an old modification
-
Ge J., Yu Y.T. RNA pseudouridylation: new insights into an old modification. Trends Biochem. Sci. 2013, 38:210-218.
-
(2013)
Trends Biochem. Sci.
, vol.38
, pp. 210-218
-
-
Ge, J.1
Yu, Y.T.2
-
91
-
-
84953635227
-
Insight into the mechanisms and functions of spliceosomal snRNA pseudouridylation
-
Adachi H., Yu Y.T. Insight into the mechanisms and functions of spliceosomal snRNA pseudouridylation. World J. Biol. Chem. 2014, 5:398-408.
-
(2014)
World J. Biol. Chem.
, vol.5
, pp. 398-408
-
-
Adachi, H.1
Yu, Y.T.2
-
92
-
-
80955171917
-
Functions and mechanisms of spliceosomal small nuclear RNA pseudouridylation
-
Wu G., Yu A.T., Kantartzis A., Yu Y.T. Functions and mechanisms of spliceosomal small nuclear RNA pseudouridylation. Wiley Interdiscip Rev RNA 2011, 2:571-581.
-
(2011)
Wiley Interdiscip Rev RNA
, vol.2
, pp. 571-581
-
-
Wu, G.1
Yu, A.T.2
Kantartzis, A.3
Yu, Y.T.4
-
94
-
-
2442691791
-
Missense mutation in pseudouridine synthase 1 (PUS1) causes mitochondrial myopathy and sideroblastic anemia (MLASA)
-
Bykhovskaya Y., Casas K., Mengesha E., Inbal A., Fischel-Ghodsian N. Missense mutation in pseudouridine synthase 1 (PUS1) causes mitochondrial myopathy and sideroblastic anemia (MLASA). Am. J. Hum. Genet. 2004, 74:1303-1308.
-
(2004)
Am. J. Hum. Genet.
, vol.74
, pp. 1303-1308
-
-
Bykhovskaya, Y.1
Casas, K.2
Mengesha, E.3
Inbal, A.4
Fischel-Ghodsian, N.5
-
95
-
-
0031799895
-
X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions
-
Heiss N.S., Knight S.W., Vulliamy T.J., Klauck S.M., Wiemann S., Mason P.J., Poustka A., Dokal I. X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions. Nat. Genet. 1998, 19:32-38.
-
(1998)
Nat. Genet.
, vol.19
, pp. 32-38
-
-
Heiss, N.S.1
Knight, S.W.2
Vulliamy, T.J.3
Klauck, S.M.4
Wiemann, S.5
Mason, P.J.6
Poustka, A.7
Dokal, I.8
-
96
-
-
0029566314
-
Stabilization of RNA stacking by pseudouridine
-
Davis D.R. Stabilization of RNA stacking by pseudouridine. Nucleic Acids Res. 1995, 23:5020-5026.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 5020-5026
-
-
Davis, D.R.1
-
97
-
-
84899033539
-
The contribution of pseudouridine to stabilities and structure of RNAs
-
Kierzek E., Malgowska M., Lisowiec J., Turner D.H., Gdaniec Z., Kierzek R. The contribution of pseudouridine to stabilities and structure of RNAs. Nucleic Acids Res. 2014, 42:3492-3501.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 3492-3501
-
-
Kierzek, E.1
Malgowska, M.2
Lisowiec, J.3
Turner, D.H.4
Gdaniec, Z.5
Kierzek, R.6
-
98
-
-
79959284255
-
Converting nonsense codons into sense codons by targeted pseudouridylation
-
Karijolich J., Yu Y.T. Converting nonsense codons into sense codons by targeted pseudouridylation. Nature 2011, 474:395-398.
-
(2011)
Nature
, vol.474
, pp. 395-398
-
-
Karijolich, J.1
Yu, Y.T.2
-
99
-
-
80053576647
-
Steroid receptor RNA activator - a nuclear receptor coregulator with multiple partners: insights and challenges
-
Colley S.M., Leedman P.J. Steroid receptor RNA activator - a nuclear receptor coregulator with multiple partners: insights and challenges. Biochimie 2011, 93:1966-1972.
-
(2011)
Biochimie
, vol.93
, pp. 1966-1972
-
-
Colley, S.M.1
Leedman, P.J.2
-
100
-
-
80053572392
-
Steroid receptor RNA activator bi-faceted genetic system: heads or tails?
-
Cooper C., Vincett D., Yan Y., Hamedani M.K., Myal Y., Leygue E. Steroid receptor RNA activator bi-faceted genetic system: heads or tails?. Biochimie 2011, 93:1973-1980.
-
(2011)
Biochimie
, vol.93
, pp. 1973-1980
-
-
Cooper, C.1
Vincett, D.2
Yan, Y.3
Hamedani, M.K.4
Myal, Y.5
Leygue, E.6
-
101
-
-
0033515637
-
A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex
-
Lanz R.B., McKenna N.J., Onate S.A., Albrecht U., Wong J., Tsai S.Y., Tsai M.J., O'Malley B.W. A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex. Cell 1999, 97:17-27.
-
(1999)
Cell
, vol.97
, pp. 17-27
-
-
Lanz, R.B.1
McKenna, N.J.2
Onate, S.A.3
Albrecht, U.4
Wong, J.5
Tsai, S.Y.6
Tsai, M.J.7
O'Malley, B.W.8
-
102
-
-
84862195751
-
Structural architecture of the human long non-coding RNA, steroid receptor RNA activator
-
Novikova I.V., Hennelly S.P., Sanbonmatsu K.Y. Structural architecture of the human long non-coding RNA, steroid receptor RNA activator. Nucleic Acids Res. 2012, 40:5034-5051.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5034-5051
-
-
Novikova, I.V.1
Hennelly, S.P.2
Sanbonmatsu, K.Y.3
-
103
-
-
4344573761
-
Regulation of nuclear receptor activity by a pseudouridine synthase through posttranscriptional modification of steroid receptor RNA activator
-
Zhao X., Patton J.R., Davis S.L., Florence B., Ames S.J., Spanjaard R.A. Regulation of nuclear receptor activity by a pseudouridine synthase through posttranscriptional modification of steroid receptor RNA activator. Mol. Cell 2004, 15:549-558.
-
(2004)
Mol. Cell
, vol.15
, pp. 549-558
-
-
Zhao, X.1
Patton, J.R.2
Davis, S.L.3
Florence, B.4
Ames, S.J.5
Spanjaard, R.A.6
-
104
-
-
33847234974
-
Pus3p- and Pus1p-dependent pseudouridylation of steroid receptor RNA activator controls a functional switch that regulates nuclear receptor signaling
-
Zhao X., Patton J.R., Ghosh S.K., Fischel-Ghodsian N., Shen L., Spanjaard R.A. Pus3p- and Pus1p-dependent pseudouridylation of steroid receptor RNA activator controls a functional switch that regulates nuclear receptor signaling. Mol. Endocrinol. 2007, 21:686-699.
-
(2007)
Mol. Endocrinol.
, vol.21
, pp. 686-699
-
-
Zhao, X.1
Patton, J.R.2
Ghosh, S.K.3
Fischel-Ghodsian, N.4
Shen, L.5
Spanjaard, R.A.6
-
105
-
-
84867560413
-
A small RNA derived from RNA coactivator SRA blocks steroid receptor signaling via inhibition of Pus1p-mediated pseudouridylation of SRA: evidence of a novel RNA binding domain in the N-terminus of steroid receptors
-
Ghosh S.K., Patton J.R., Spanjaard R.A. A small RNA derived from RNA coactivator SRA blocks steroid receptor signaling via inhibition of Pus1p-mediated pseudouridylation of SRA: evidence of a novel RNA binding domain in the N-terminus of steroid receptors. Biochemistry 2012, 51:8163-8172.
-
(2012)
Biochemistry
, vol.51
, pp. 8163-8172
-
-
Ghosh, S.K.1
Patton, J.R.2
Spanjaard, R.A.3
-
106
-
-
0032481315
-
Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA
-
Paul M.S., Bass B.L. Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA. EMBO J. 1998, 17:1120-1127.
-
(1998)
EMBO J.
, vol.17
, pp. 1120-1127
-
-
Paul, M.S.1
Bass, B.L.2
-
107
-
-
12344300804
-
Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome
-
Athanasiadis A., Rich A., Maas S. Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome. PLoS Biol. 2004, 2.
-
(2004)
PLoS Biol.
, vol.2
-
-
Athanasiadis, A.1
Rich, A.2
Maas, S.3
-
108
-
-
0011823131
-
A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs
-
Wagner R.W., Smith J.E., Cooperman B.S., Nishikura K. A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs. Proc. Natl. Acad. Sci. U. S. A. 1989, 86:2647-2651.
-
(1989)
Proc. Natl. Acad. Sci. U. S. A.
, vol.86
, pp. 2647-2651
-
-
Wagner, R.W.1
Smith, J.E.2
Cooperman, B.S.3
Nishikura, K.4
-
109
-
-
0034612640
-
Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2
-
Higuchi M., Maas S., Single F.N., Hartner J., Rozov A., Burnashev N., Feldmeyer D., Sprengel R., Seeburg P.H. Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2. Nature 2000, 406:78-81.
-
(2000)
Nature
, vol.406
, pp. 78-81
-
-
Higuchi, M.1
Maas, S.2
Single, F.N.3
Hartner, J.4
Rozov, A.5
Burnashev, N.6
Feldmeyer, D.7
Sprengel, R.8
Seeburg, P.H.9
-
110
-
-
84912098781
-
The RNA-editing enzyme ADAR1 controls innate immune responses to RNA
-
Mannion N.M., Greenwood S.M., Young R., Cox S., Brindle J., Read D., Nellaker C., Vesely C., Ponting C.P., McLaughlin P.J., Jantsch M.F., Dorin J., Adams I.R., Scadden A.D., Ohman M., Keegan L.P., O'Connell M.A. The RNA-editing enzyme ADAR1 controls innate immune responses to RNA. Cell Rep. 2014, 9:1482-1494.
-
(2014)
Cell Rep.
, vol.9
, pp. 1482-1494
-
-
Mannion, N.M.1
Greenwood, S.M.2
Young, R.3
Cox, S.4
Brindle, J.5
Read, D.6
Nellaker, C.7
Vesely, C.8
Ponting, C.P.9
McLaughlin, P.J.10
Jantsch, M.F.11
Dorin, J.12
Adams, I.R.13
Scadden, A.D.14
Ohman, M.15
Keegan, L.P.16
O'Connell, M.A.17
-
111
-
-
84941100160
-
RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself
-
Liddicoat B.J., Piskol R., Chalk A.M., Ramaswami G., Higuchi M., Hartner J.C., Li J.B., Seeburg P.H., Walkley C.R. RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself. Science 2015, 349:1115-1120.
-
(2015)
Science
, vol.349
, pp. 1115-1120
-
-
Liddicoat, B.J.1
Piskol, R.2
Chalk, A.M.3
Ramaswami, G.4
Higuchi, M.5
Hartner, J.C.6
Li, J.B.7
Seeburg, P.H.8
Walkley, C.R.9
-
112
-
-
34547629436
-
RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex
-
Kawahara Y., Zinshteyn B., Chendrimada T.P., Shiekhattar R., Nishikura K. RNA editing of the microRNA-151 precursor blocks cleavage by the Dicer-TRBP complex. EMBO Rep. 2007, 8:763-769.
-
(2007)
EMBO Rep.
, vol.8
, pp. 763-769
-
-
Kawahara, Y.1
Zinshteyn, B.2
Chendrimada, T.P.3
Shiekhattar, R.4
Nishikura, K.5
-
113
-
-
84891670616
-
Mammalian conserved ADAR targets comprise only a small fragment of the human editosome
-
Pinto Y., Cohen H.Y., Levanon E.Y. Mammalian conserved ADAR targets comprise only a small fragment of the human editosome. Genome Biol. 2014, 15:R5.
-
(2014)
Genome Biol.
, vol.15
, pp. R5
-
-
Pinto, Y.1
Cohen, H.Y.2
Levanon, E.Y.3
-
114
-
-
84895535383
-
A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes
-
Bazak L., Haviv A., Barak M., Jacob-Hirsch J., Deng P., Zhang R., Isaacs F.J., Rechavi G., Li J.B., Eisenberg E., Levanon E.Y. A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes. Genome Res. 2014, 24:365-376.
-
(2014)
Genome Res.
, vol.24
, pp. 365-376
-
-
Bazak, L.1
Haviv, A.2
Barak, M.3
Jacob-Hirsch, J.4
Deng, P.5
Zhang, R.6
Isaacs, F.J.7
Rechavi, G.8
Li, J.B.9
Eisenberg, E.10
Levanon, E.Y.11
-
115
-
-
84907361822
-
A genome-wide map of hyper-edited RNA reveals numerous new sites
-
Porath H.T., Carmi S., Levanon E.Y. A genome-wide map of hyper-edited RNA reveals numerous new sites. Nat. Commun. 2014, 5:4726.
-
(2014)
Nat. Commun.
, vol.5
, pp. 4726
-
-
Porath, H.T.1
Carmi, S.2
Levanon, E.Y.3
-
116
-
-
84876547481
-
Darned in 2013: inclusion of model organisms and linking with Wikipedia
-
Kiran A.M., O'Mahony J.J., Sanjeev K., Baranov P.V. Darned in 2013: inclusion of model organisms and linking with Wikipedia. Nucleic Acids Res. 2013, 41:D258-D261.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D258-D261
-
-
Kiran, A.M.1
O'Mahony, J.J.2
Sanjeev, K.3
Baranov, P.V.4
-
117
-
-
84891797364
-
RADAR: a rigorously annotated database of A-to-I RNA editing
-
Ramaswami G., Li J.B. RADAR: a rigorously annotated database of A-to-I RNA editing. Nucleic Acids Res. 2014, 42:D109-D113.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D109-D113
-
-
Ramaswami, G.1
Li, J.B.2
-
118
-
-
3342969381
-
RNA editing of a miRNA precursor
-
Luciano D.J., Mirsky H., Vendetti N.J., Maas S. RNA editing of a miRNA precursor. RNA 2004, 10:1174-1177.
-
(2004)
RNA
, vol.10
, pp. 1174-1177
-
-
Luciano, D.J.1
Mirsky, H.2
Vendetti, N.J.3
Maas, S.4
-
119
-
-
84864591239
-
Systematic identification of edited microRNAs in the human brain
-
Alon S., Mor E., Vigneault F., Church G.M., Locatelli F., Galeano F., Gallo A., Shomron N., Eisenberg E. Systematic identification of edited microRNAs in the human brain. Genome Res. 2012, 22:1533-1540.
-
(2012)
Genome Res.
, vol.22
, pp. 1533-1540
-
-
Alon, S.1
Mor, E.2
Vigneault, F.3
Church, G.M.4
Locatelli, F.5
Galeano, F.6
Gallo, A.7
Shomron, N.8
Eisenberg, E.9
-
120
-
-
33745053086
-
RNA editing of human microRNAs
-
Blow M.J., Grocock R.J., van Dongen S., Enright A.J., Dicks E., Futreal P.A., Wooster R., Stratton M.R. RNA editing of human microRNAs. Genome Biol. 2006, 7:R27.
-
(2006)
Genome Biol.
, vol.7
, pp. R27
-
-
Blow, M.J.1
Grocock, R.J.2
van Dongen, S.3
Enright, A.J.4
Dicks, E.5
Futreal, P.A.6
Wooster, R.7
Stratton, M.R.8
-
121
-
-
84926520652
-
ADAR1 is required for differentiation and neural induction by regulating microRNA processing in a catalytically independent manner
-
Chen T., Xiang J.F., Zhu S., Chen S., Yin Q.F., Zhang X.O., Zhang J., Feng H., Dong R., Li X.J., Yang L., Chen L.L. ADAR1 is required for differentiation and neural induction by regulating microRNA processing in a catalytically independent manner. Cell Res. 2015, 25:459-476.
-
(2015)
Cell Res.
, vol.25
, pp. 459-476
-
-
Chen, T.1
Xiang, J.F.2
Zhu, S.3
Chen, S.4
Yin, Q.F.5
Zhang, X.O.6
Zhang, J.7
Feng, H.8
Dong, R.9
Li, X.J.10
Yang, L.11
Chen, L.L.12
-
122
-
-
84864580697
-
A-to-I editing of microRNAs in the mammalian brain increases during development
-
Ekdahl Y., Farahani H.S., Behm M., Lagergren J., Ohman M. A-to-I editing of microRNAs in the mammalian brain increases during development. Genome Res. 2012, 22:1477-1487.
-
(2012)
Genome Res.
, vol.22
, pp. 1477-1487
-
-
Ekdahl, Y.1
Farahani, H.S.2
Behm, M.3
Lagergren, J.4
Ohman, M.5
-
123
-
-
52649128795
-
Frequency and fate of microRNA editing in human brain
-
Kawahara Y., Megraw M., Kreider E., Iizasa H., Valente L., Hatzigeorgiou A.G., Nishikura K. Frequency and fate of microRNA editing in human brain. Nucleic Acids Res. 2008, 36:5270-5280.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 5270-5280
-
-
Kawahara, Y.1
Megraw, M.2
Kreider, E.3
Iizasa, H.4
Valente, L.5
Hatzigeorgiou, A.G.6
Nishikura, K.7
-
124
-
-
84899894179
-
ADAR mediates differential expression of polycistronic microRNAs
-
Chawla G., Sokol N.S. ADAR mediates differential expression of polycistronic microRNAs. Nucleic Acids Res. 2014, 42:5245-5255.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 5245-5255
-
-
Chawla, G.1
Sokol, N.S.2
-
125
-
-
84878593341
-
Reprogramming of microRNAs by adenosine-to-inosine editing and the selective elimination of edited microRNA precursors in mouse oocytes and preimplantation embryos
-
Garcia-Lopez J., Hourcade Jde D., Del Mazo J. Reprogramming of microRNAs by adenosine-to-inosine editing and the selective elimination of edited microRNA precursors in mouse oocytes and preimplantation embryos. Nucleic Acids Res. 2013, 41:5483-5493.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 5483-5493
-
-
Garcia-Lopez, J.1
Hourcade Jde, D.2
Del Mazo, J.3
-
126
-
-
84924226337
-
Modulation of microRNA editing, expression and processing by ADAR2 deaminase in glioblastoma
-
Tomaselli S., Galeano F., Alon S., Raho S., Galardi S., Polito V.A., Presutti C., Vincenti S., Eisenberg E., Locatelli F., Gallo A. Modulation of microRNA editing, expression and processing by ADAR2 deaminase in glioblastoma. Genome Biol. 2015, 16:5.
-
(2015)
Genome Biol.
, vol.16
, pp. 5
-
-
Tomaselli, S.1
Galeano, F.2
Alon, S.3
Raho, S.4
Galardi, S.5
Polito, V.A.6
Presutti, C.7
Vincenti, S.8
Eisenberg, E.9
Locatelli, F.10
Gallo, A.11
-
127
-
-
84925283835
-
ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain
-
Vesely C., Tauber S., Sedlazeck F.J., Tajaddod M., von Haeseler A., Jantsch M.F. ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain. Nucleic Acids Res. 2014, 42:12155-12168.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 12155-12168
-
-
Vesely, C.1
Tauber, S.2
Sedlazeck, F.J.3
Tajaddod, M.4
von Haeseler, A.5
Jantsch, M.F.6
-
128
-
-
84943632717
-
DREAM: a webserver for the identification of editing sites in mature miRNAs using deep sequencing data
-
Alon S., Erew M., Eisenberg E. DREAM: a webserver for the identification of editing sites in mature miRNAs using deep sequencing data. Bioinformatics 2015.
-
(2015)
Bioinformatics
-
-
Alon, S.1
Erew, M.2
Eisenberg, E.3
-
129
-
-
84870428740
-
MiR-EdiTar: a database of predicted A-to-I edited miRNA target sites
-
Lagana A., Paone A., Veneziano D., Cascione L., Gasparini P., Carasi S., Russo F., Nigita G., Macca V., Giugno R., Pulvirenti A., Shasha D., Ferro A., Croce C.M. miR-EdiTar: a database of predicted A-to-I edited miRNA target sites. Bioinformatics 2012, 28:3166-3168.
-
(2012)
Bioinformatics
, vol.28
, pp. 3166-3168
-
-
Lagana, A.1
Paone, A.2
Veneziano, D.3
Cascione, L.4
Gasparini, P.5
Carasi, S.6
Russo, F.7
Nigita, G.8
Macca, V.9
Giugno, R.10
Pulvirenti, A.11
Shasha, D.12
Ferro, A.13
Croce, C.M.14
-
130
-
-
30044443191
-
Modulation of microRNA processing and expression through RNA editing by ADAR deaminases
-
Yang W., Chendrimada T.P., Wang Q., Higuchi M., Seeburg P.H., Shiekhattar R., Nishikura K. Modulation of microRNA processing and expression through RNA editing by ADAR deaminases. Nat. Struct. Mol. Biol. 2006, 13:13-21.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 13-21
-
-
Yang, W.1
Chendrimada, T.P.2
Wang, Q.3
Higuchi, M.4
Seeburg, P.H.5
Shiekhattar, R.6
Nishikura, K.7
-
131
-
-
84921463352
-
A-to-I editing in the miRNA seed region regulates target mRNA selection and silencing efficiency
-
Kume H., Hino K., Galipon J., Ui-Tei K. A-to-I editing in the miRNA seed region regulates target mRNA selection and silencing efficiency. Nucleic Acids Res. 2014, 42:10050-10060.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 10050-10060
-
-
Kume, H.1
Hino, K.2
Galipon, J.3
Ui-Tei, K.4
-
132
-
-
33847317017
-
Redirection of silencing targets by adenosine-to-inosine editing of miRNAs
-
Kawahara Y., Zinshteyn B., Sethupathy P., Iizasa H., Hatzigeorgiou A.G., Nishikura K. Redirection of silencing targets by adenosine-to-inosine editing of miRNAs. Science 2007, 315:1137-1140.
-
(2007)
Science
, vol.315
, pp. 1137-1140
-
-
Kawahara, Y.1
Zinshteyn, B.2
Sethupathy, P.3
Iizasa, H.4
Hatzigeorgiou, A.G.5
Nishikura, K.6
-
133
-
-
84868629163
-
Attenuated adenosine-to-inosine editing of microRNA-376a* promotes invasiveness of glioblastoma cells
-
Choudhury Y., Tay F.C., Lam D.H., Sandanaraj E., Tang C., Ang B.T., Wang S. Attenuated adenosine-to-inosine editing of microRNA-376a* promotes invasiveness of glioblastoma cells. J. Clin. Invest. 2012, 122:4059-4076.
-
(2012)
J. Clin. Invest.
, vol.122
, pp. 4059-4076
-
-
Choudhury, Y.1
Tay, F.C.2
Lam, D.H.3
Sandanaraj, E.4
Tang, C.5
Ang, B.T.6
Wang, S.7
-
134
-
-
84923850254
-
Reduced adenosine-to-inosine miR-455-5p editing promotes melanoma growth and metastasis
-
Shoshan E., Mobley A.K., Braeuer R.R., Kamiya T., Huang L., Vasquez M.E., Salameh A., Lee H.J., Kim S.J., Ivan C., Velazquez-Torres G., Nip K.M., Zhu K., Brooks D., Jones S.J., Birol I., Mosqueda M., Wen Y.Y., Eterovic A.K., Sood A.K., Hwu P., Gershenwald J.E., Robertson A.G., Calin G.A., Markel G., Fidler I.J., Bar-Eli M. Reduced adenosine-to-inosine miR-455-5p editing promotes melanoma growth and metastasis. Nat. Cell Biol. 2015, 17:311-321.
-
(2015)
Nat. Cell Biol.
, vol.17
, pp. 311-321
-
-
Shoshan, E.1
Mobley, A.K.2
Braeuer, R.R.3
Kamiya, T.4
Huang, L.5
Vasquez, M.E.6
Salameh, A.7
Lee, H.J.8
Kim, S.J.9
Ivan, C.10
Velazquez-Torres, G.11
Nip, K.M.12
Zhu, K.13
Brooks, D.14
Jones, S.J.15
Birol, I.16
Mosqueda, M.17
Wen, Y.Y.18
Eterovic, A.K.19
Sood, A.K.20
Hwu, P.21
Gershenwald, J.E.22
Robertson, A.G.23
Calin, G.A.24
Markel, G.25
Fidler, I.J.26
Bar-Eli, M.27
more..
-
135
-
-
84953346325
-
Methods for distinguishing between protein-coding and long noncoding RNAs and the elusive biological purpose of translation of long noncoding RNAs
-
Housman G., Ulitsky I. Methods for distinguishing between protein-coding and long noncoding RNAs and the elusive biological purpose of translation of long noncoding RNAs. Biochim. Biophys. Acta 2015 Aug 8, 1859:31-40.
-
(2015)
Biochim. Biophys. Acta
, vol.1859
, pp. 31-40
-
-
Housman, G.1
Ulitsky, I.2
-
136
-
-
84953357951
-
Dynamic interplay and function of multiple noncoding genes governing X chromosome inactivation
-
Yue M., Richard J.L.C., Ogawa Y. Dynamic interplay and function of multiple noncoding genes governing X chromosome inactivation. Biochim. Biophys. Acta 2015 Aug 7, 1859:112-120.
-
(2015)
Biochim. Biophys. Acta
, vol.1859
, pp. 112-120
-
-
Yue, M.1
Richard, J.L.C.2
Ogawa, Y.3
-
137
-
-
84953350072
-
MALAT1 long non-coding RNA in cancer
-
Yoshimoto R., Mayeda A., Yoshida M., Nakagawa S. MALAT1 long non-coding RNA in cancer. Biochim. Biophys. Acta 2015 Oct 3, 1859:192-199.
-
(2015)
Biochim. Biophys. Acta
, vol.1859
, pp. 192-199
-
-
Yoshimoto, R.1
Mayeda, A.2
Yoshida, M.3
Nakagawa, S.4
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