-
1
-
-
9144224451
-
Processing of primary microRNAs by the Microprocessor complex
-
Denli, A. M., Tops, B. B., Plasterk, R. H., Ketting, R. F. & Hannon, G. J. Processing of primary microRNAs by the Microprocessor complex. Nature 432, 231-235 (2004).
-
(2004)
Nature
, vol.432
, pp. 231-235
-
-
Denli, A.M.1
Tops, B.B.2
Plasterk, R.H.3
Ketting, R.F.4
Hannon, G.J.5
-
2
-
-
9144225636
-
The Microprocessor complex mediates the genesis of microRNAs
-
Gregory, R. I. et al. The Microprocessor complex mediates the genesis of microRNAs. Nature 432, 235-240 (2004).
-
(2004)
Nature
, vol.432
, pp. 235-240
-
-
Gregory, R.I.1
-
3
-
-
10644234841
-
The Drosha-DGCR8 complex in primary microRNAprocessing
-
Han, J. et al. The Drosha-DGCR8 complex in primary microRNAprocessing. Genes Dev. 18, 3016-3027 (2004).
-
(2004)
Genes Dev.
, vol.18
, pp. 3016-3027
-
-
Han, J.1
-
4
-
-
10344248903
-
The human DiGeorge syndrome critical region gene 8 and ItsD.melanogaster homolog are required for miRNAbiogenesis.
-
Landthaler, M., Yalcin, A. & Tuschl, T. The human DiGeorge syndrome critical region gene 8 and ItsD. melanogaster homolog are required for miRNAbiogenesis. Curr. Biol. 14, 2162-2167 (2004).
-
(2004)
Curr. Biol.
, vol.14
, pp. 2162-2167
-
-
Landthaler, M.1
Yalcin, A.2
Tuschl, T.3
-
5
-
-
33744520104
-
Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex
-
Han, J. et al. Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell 125, 887-901 (2006).
-
(2006)
Cell
, vol.125
, pp. 887-901
-
-
Han, J.1
-
6
-
-
35348955882
-
A universal framework for regulatory element discovery across all genomes and data types
-
Elemento, O., Slonim, N. & Tavazoie, S. A universal framework for regulatory element discovery across all genomes and data types. Mol. Cell 28, 337-350 (2007).
-
(2007)
Mol. Cell
, vol.28
, pp. 337-350
-
-
Elemento, O.1
Slonim, N.2
Tavazoie, S.3
-
7
-
-
0017367836
-
Nucleotide sequences at the N6-methyladenosine sites of HeLa cell messenger ribonucleic acid
-
Wei, C. M. & Moss, B. Nucleotide sequences at the N6-methyladenosine sites of HeLa cell messenger ribonucleic acid. Biochemistry 16, 1672-1676 (1977).
-
(1977)
Biochemistry
, vol.16
, pp. 1672-1676
-
-
Wei, C.M.1
Moss, B.2
-
8
-
-
84860779086
-
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
-
Dominissini, D. et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature 485, 201-206 (2012).
-
(2012)
Nature
, vol.485
, pp. 201-206
-
-
Dominissini, D.1
-
9
-
-
84862649489
-
Comprehensive analysis of mRNA methylation reveals enrichment in 39 UTRs and near stop codons
-
Meyer, K. D. et al. Comprehensive analysis of mRNA methylation reveals enrichment in 39 UTRs and near stop codons. Cell 149, 1635-1646 (2012).
-
(2012)
Cell
, vol.149
, pp. 1635-1646
-
-
Meyer, K.D.1
-
10
-
-
0030712151
-
Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase.
-
Bokar, J. A., Shambaugh, M. E., Polayes, D., Matera, A. G. & Rottman, F. M. Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase. RNA 3, 1233-1247 (1997).
-
(1997)
RNA
, vol.3
, pp. 1233-1247
-
-
Bokar, J.A.1
Shambaugh, M.E.2
Polayes, D.3
Matera, A.G.4
Rottman, F.M.5
-
11
-
-
84879146658
-
Mapping and significance of the mRNA methylome
-
Sibbritt, T., Patel, H. R. & Preiss, T. Mapping and significance of the mRNA methylome. RNA 4, 397-422 (2013).
-
(2013)
RNA
, vol.4
, pp. 397-422
-
-
Sibbritt, T.1
Patel, H.R.2
Preiss, T.3
-
12
-
-
0021398869
-
Effect of undermethylation on mRNA cytoplasmic appearance and half-life.
-
Camper, S. A., Albers, R. J., Coward, J. K. & Rottman, F. M. Effect of undermethylation on mRNA cytoplasmic appearance and half-life. Mol. Cell. Biol. 4, 538-543 (1984).
-
(1984)
Mol. Cell. Biol.
, vol.4
, pp. 538-543
-
-
Camper, S.A.1
Albers, R.J.2
Coward, J.K.3
Rottman, F.M.4
-
13
-
-
0025193111
-
N6-methyladenosine residues in an intron-specific regionofprolactinpre-mRNA
-
Carroll, S. M., Narayan, P. & Rottman, F. M. N6-methyladenosine residues in an intron-specific regionofprolactinpre-mRNA.Mol.Cell. Biol. 10, 4456-4465(1990).
-
(1990)
Mol.Cell Biol.
, vol.10
, pp. 4456-4465
-
-
Carroll, S.M.1
Narayan, P.2
Rottman, F.M.3
-
14
-
-
84875634162
-
Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration.
-
Thorvaldsdóttir, H., Robinson, J. T. & Mesirov, J. P. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinform. 14, 178-192 (2013).
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 178-192
-
-
Thorvaldsdóttir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
15
-
-
0036788427
-
Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA:m6A methyltransferase.
-
Bujnicki, J. M., Feder, M., Radlinska, M. & Blumenthal, R. M. Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA:m6A methyltransferase. J. Mol. Evol. 55, 431-444 (2002).
-
(2002)
J. Mol. Evol.
, vol.55
, pp. 431-444
-
-
Bujnicki, J.M.1
Feder, M.2
Radlinska, M.3
Blumenthal, R.M.4
-
16
-
-
67749132423
-
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
-
Chi, S. W., Zang, J. B., Mele, A. & Darnell, R. B. Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature 460, 479-486 (2009).
-
(2009)
Nature
, vol.460
, pp. 479-486
-
-
Chi, S.W.1
Zang, J.B.2
Mele, A.3
Darnell, R.B.4
-
17
-
-
74949092081
-
Detection of nonneutral substitution rates onmammalian phylogenies
-
Pollard, K. S., Hubisz, M. J., Rosenbloom, K. R. & Siepel, A. Detection of nonneutral substitution rates onmammalian phylogenies. GenomeRes. 20, 110-121 (2010).
-
(2010)
Genome Res
, vol.20
, pp. 110-121
-
-
Pollard, K.S.1
Hubisz, M.J.2
Rosenbloom, K.R.3
Siepel, A.4
-
18
-
-
42949179593
-
In vitro and in vivo assays for the activity of Drosha complex.
-
Lee, Y. & Kim, V. N. In vitro and In vivo assays for the activity of Drosha complex. Methods Enzymol. 427, 87-106 (2007).
-
(2007)
Methods Enzymol.
, vol.427
, pp. 87-106
-
-
Lee, Y.1
Kim, V.N.2
-
19
-
-
84874086395
-
Beyondsecondary structure: Primary-sequence determinants license pri-miRNA hairpins for processing.
-
Auyeung, V. C., Ulitsky, I., McGeary, S. E.&Bartel, D. P. Beyondsecondary structure: primary-sequence determinants license pri-miRNA hairpins for processing. Cell 152, 844-858 (2013).
-
(2013)
Cell
, vol.152
, pp. 844-858
-
-
Auyeung, V.C.1
Ulitsky, I.2
McGeary, S.E.3
Bartel, D.P.4
-
20
-
-
38049115129
-
Endogenous humanmicroRNAs that suppress breast cancer metastasis
-
Tavazoie, S. F. et al. Endogenous humanmicroRNAs that suppress breast cancer metastasis. Nature 451, 147-152 (2008).
-
(2008)
Nature
, vol.451
, pp. 147-152
-
-
Tavazoie, S.F.1
-
21
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2.
-
Langmead, B.&Salzberg, S. L. Fast gapped-read alignment with Bowtie 2. Nature Methods 9, 357-359 (2012).
-
(2012)
Nature Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
22
-
-
79959920881
-
An integrated ChIP-seq analysis platform with customizable workflows
-
Giannopoulou, E. G. & Elemento, O. An integrated ChIP-seq analysis platform with customizable workflows. BMC Bioinformatics 12, 277 (2011).
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 277
-
-
Giannopoulou, E.G.1
Elemento, O.2
-
23
-
-
79960230895
-
Mapping in vivo protein-RNA interactions at singlenucleotide resolution from HITS-CLIP data
-
Zhang, C. & Darnell, R. B. Mapping in vivo protein-RNA interactions at singlenucleotide resolution from HITS-CLIP data. Nature Biotechnol. 29, 607-614 (2011).
-
(2011)
Nature Biotechnol.
, vol.29
, pp. 607-614
-
-
Zhang, C.1
Darnell, R.B.2
-
24
-
-
84862520770
-
Fiji: An open-source platform for biological-image analysis
-
Schindelin, J. et al. Fiji: an open-source platform for biological-image analysis. Nature Methods 9, 676-682 (2012).
-
(2012)
Nature Methods
, vol.9
, pp. 676-682
-
-
Schindelin, J.1
-
25
-
-
77954138395
-
A sensitive non-radioactive northern blot method to detect small RNAs
-
Kim, S. W. et al. A sensitive non-radioactive northern blot method to detect small RNAs. Nucleic Acids Res. 38, e98 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. e98
-
-
Kim, S.W.1
-
26
-
-
84919457819
-
M6A RNA modification controls cell fate transition in mammalian embryonic stem cells
-
Batista, P. J. et al. m6A RNA modification controls cell fate transition in mammalian embryonic stem cells. Cell Stem Cell 15, 707-719 (2014).
-
(2014)
Cell Stem Cell
, vol.15
, pp. 707-719
-
-
Batista, P.J.1
|