-
1
-
-
84905324241
-
Capturing the variant surface glycoprotein repertoire (the VSGnome) of Trypanosoma brucei Lister 427
-
Cross GAM, Kim H-S, Wickstead B, Capturing the variant surface glycoprotein repertoire (the VSGnome) of Trypanosoma brucei Lister 427. Mol Biochem Parasitol. 2014;195: 59–73. doi: 10.1016/j.molbiopara.2014.06.004 24992042
-
(2014)
Mol Biochem Parasitol
, vol.195
, pp. 59-73
-
-
Cross, G.A.M.1
Kim, H.-S.2
Wickstead, B.3
-
2
-
-
79960888084
-
A Case of Sleeping Sickness showing Regular Periodical Increase of the Parasites Disclosed
-
Ross R, Thomson D, A Case of Sleeping Sickness showing Regular Periodical Increase of the Parasites Disclosed. Br Med J. 1910;1: 1544–1545. 20765166
-
(1910)
Br Med J
, vol.1
, pp. 1544-1545
-
-
Ross, R.1
Thomson, D.2
-
3
-
-
84963941005
-
The in vivo dynamics of antigenic variation in Trypanosoma brucei
-
Mugnier MR, Cross GAM, Papavasiliou FN, The in vivo dynamics of antigenic variation in Trypanosoma brucei. Science. 2015;347: 1470–1473. doi: 10.1126/science.aaa4502 25814582
-
(2015)
Science
, vol.347
, pp. 1470-1473
-
-
Mugnier, M.R.1
Cross, G.A.M.2
Papavasiliou, F.N.3
-
4
-
-
35548966701
-
Hydrodynamic flow-mediated protein sorting on the cell surface of trypanosomes
-
Engstler M, Pfohl T, Herminghaus S, Boshart M, Wiegertjes G, Heddergott N, et al. Hydrodynamic flow-mediated protein sorting on the cell surface of trypanosomes. Cell. 2007;131: 505–515. 17981118
-
(2007)
Cell
, vol.131
, pp. 505-515
-
-
Engstler, M.1
Pfohl, T.2
Herminghaus, S.3
Boshart, M.4
Wiegertjes, G.5
Heddergott, N.6
-
5
-
-
0346099248
-
Molecular regulation of the life cycle of African trypanosomes
-
Matthews KR, Ellis JR, Paterou A, Molecular regulation of the life cycle of African trypanosomes. Trends Parasitol. 2004;20: 40–47. 14700589
-
(2004)
Trends Parasitol
, vol.20
, pp. 40-47
-
-
Matthews, K.R.1
Ellis, J.R.2
Paterou, A.3
-
6
-
-
0030859962
-
Mechanisms of developmental regulation in Trypanosoma brucei: a polypyrimidine tract in the 3'-untranslated region of a surface protein mRNA affects RNA abundance and translation
-
Hotz HR, Hartmann C, Huober K, Hug M, Clayton C, Mechanisms of developmental regulation in Trypanosoma brucei: a polypyrimidine tract in the 3'-untranslated region of a surface protein mRNA affects RNA abundance and translation. Nucleic Acids Res. 1997;25: 3017–3026. 9224601
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3017-3026
-
-
Hotz, H.R.1
Hartmann, C.2
Huober, K.3
Hug, M.4
Clayton, C.5
-
7
-
-
0038996729
-
Contributions of the procyclin 3' untranslated region and coding region to the regulation of expression in bloodstream forms of Trypanosoma brucei
-
Schürch N, Furger A, Kurath U, Roditi I, Contributions of the procyclin 3' untranslated region and coding region to the regulation of expression in bloodstream forms of Trypanosoma brucei. Mol Biochem Parasitol. 1997;89: 109–121. 9297705
-
(1997)
Mol Biochem Parasitol
, vol.89
, pp. 109-121
-
-
Schürch, N.1
Furger, A.2
Kurath, U.3
Roditi, I.4
-
8
-
-
0032778820
-
Structure of a regulatory 3' untranslated region from Trypanosoma brucei
-
Drozdz M, Clayton C, Structure of a regulatory 3' untranslated region from Trypanosoma brucei. RNA. 1999;5: 1632–1644. 10606273
-
(1999)
RNA
, vol.5
, pp. 1632-1644
-
-
Drozdz, M.1
Clayton, C.2
-
9
-
-
0035803397
-
A novel CCCH protein which modulates differentiation of Trypanosoma brucei to its procyclic form
-
Hendriks EF, Robinson DR, Hinkins M, Matthews KR, A novel CCCH protein which modulates differentiation of Trypanosoma brucei to its procyclic form. EMBO J. 2001;20: 6700–6711. 11726506
-
(2001)
EMBO J
, vol.20
, pp. 6700-6711
-
-
Hendriks, E.F.1
Robinson, D.R.2
Hinkins, M.3
Matthews, K.R.4
-
10
-
-
70450253253
-
Widespread variation in transcript abundance within and across developmental stages of Trypanosoma brucei
-
Jensen BC, Sivam D, Kifer CT, Myler PJ, Parsons M, Widespread variation in transcript abundance within and across developmental stages of Trypanosoma brucei. BMC Genomics. 2009;10: 482. doi: 10.1186/1471-2164-10-482 19840382
-
(2009)
BMC Genomics
, vol.10
, pp. 482
-
-
Jensen, B.C.1
Sivam, D.2
Kifer, C.T.3
Myler, P.J.4
Parsons, M.5
-
11
-
-
70349731776
-
Genome-wide expression profiling of in vivo-derived bloodstream parasite stages and dynamic analysis of mRNA alterations during synchronous differentiation in Trypanosoma brucei
-
Kabani S, Fenn K, Ross A, Ivens A, Smith TK, Ghazal P, et al. Genome-wide expression profiling of in vivo-derived bloodstream parasite stages and dynamic analysis of mRNA alterations during synchronous differentiation in Trypanosoma brucei. BMC Genomics. 2009;10: 427. doi: 10.1186/1471-2164-10-427 19747379
-
(2009)
BMC Genomics
, vol.10
, pp. 427
-
-
Kabani, S.1
Fenn, K.2
Ross, A.3
Ivens, A.4
Smith, T.K.5
Ghazal, P.6
-
12
-
-
70549084861
-
Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons
-
Queiroz R, Benz C, Fellenberg K, Hoheisel JD, Clayton C, Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons. BMC Genomics. 2009;10: 495. doi: 10.1186/1471-2164-10-495 19857263
-
(2009)
BMC Genomics
, vol.10
, pp. 495
-
-
Queiroz, R.1
Benz, C.2
Fellenberg, K.3
Hoheisel, J.D.4
Clayton, C.5
-
14
-
-
84907978005
-
Control of embryonic stem cell identity by BRD4-dependent transcriptional elongation of super-enhancer-associated pluripotency genes
-
Di Micco R, Fontanals-Cirera B, Low V, Ntziachristos P, Yuen SK, Lovell CD, et al. Control of embryonic stem cell identity by BRD4-dependent transcriptional elongation of super-enhancer-associated pluripotency genes. Cell Rep. 2014;9: 234–247. doi: 10.1016/j.celrep.2014.08.055 25263550
-
(2014)
Cell Rep
, vol.9
, pp. 234-247
-
-
Di Micco, R.1
Fontanals-Cirera, B.2
Low, V.3
Ntziachristos, P.4
Yuen, S.K.5
Lovell, C.D.6
-
15
-
-
84899137307
-
Role of BRD4 in hematopoietic differentiation of embryonic stem cells
-
Rodriguez RM, Suarez-Alvarez B, Salvanés R, Huidobro C, Toraño EG, Garcia-Perez JL, et al. Role of BRD4 in hematopoietic differentiation of embryonic stem cells. Epigenetics. 2014;9: 566–578. doi: 10.4161/epi.27711 24445267
-
(2014)
Epigenetics
, vol.9
, pp. 566-578
-
-
Rodriguez, R.M.1
Suarez-Alvarez, B.2
Salvanés, R.3
Huidobro, C.4
Toraño, E.G.5
Garcia-Perez, J.L.6
-
16
-
-
84925237186
-
Nanog requires BRD4 to maintain murine embryonic stem cell pluripotency and is suppressed by bromodomain inhibitor JQ1 together with Lefty1
-
Horne GA, Stewart HJ, Dickson J, Knapp S, Ramsahoye B, Chevassut T, Nanog requires BRD4 to maintain murine embryonic stem cell pluripotency and is suppressed by bromodomain inhibitor JQ1 together with Lefty1. Stem Cells Dev. 2015;24: 879–891. doi: 10.1089/scd.2014.0302 25393219
-
(2015)
Stem Cells Dev
, vol.24
, pp. 879-891
-
-
Horne, G.A.1
Stewart, H.J.2
Dickson, J.3
Knapp, S.4
Ramsahoye, B.5
Chevassut, T.6
-
17
-
-
34247572533
-
A novel ISWI is involved in VSG expression site downregulation in African trypanosomes
-
Hughes K, Wand M, Foulston L, Young R, Harley K, Terry S, et al. A novel ISWI is involved in VSG expression site downregulation in African trypanosomes. EMBO J. 2007;26: 2400–2410. 17431399
-
(2007)
EMBO J
, vol.26
, pp. 2400-2410
-
-
Hughes, K.1
Wand, M.2
Foulston, L.3
Young, R.4
Harley, K.5
Terry, S.6
-
18
-
-
48349107004
-
A histone methyltransferase modulates antigenic variation in African trypanosomes
-
Figueiredo LM, Janzen CJ, Cross GAM, A histone methyltransferase modulates antigenic variation in African trypanosomes. PLoS Biol. 2008;6: e161. doi: 10.1371/journal.pbio.0060161 18597556
-
(2008)
PLoS Biol
, vol.6
, pp. e161
-
-
Figueiredo, L.M.1
Janzen, C.J.2
Cross, G.A.M.3
-
19
-
-
47749130042
-
Two essential MYST-family proteins display distinct roles in histone H4K10 acetylation and telomeric silencing in trypanosomes
-
Kawahara T, Siegel TN, Ingram AK, Alsford S, Cross GAM, Horn D, Two essential MYST-family proteins display distinct roles in histone H4K10 acetylation and telomeric silencing in trypanosomes. Mol Microbiol. 2008;69: 1054–1068. doi: 10.1111/j.1365-2958.2008.06346.x 18631159
-
(2008)
Mol Microbiol
, vol.69
, pp. 1054-1068
-
-
Kawahara, T.1
Siegel, T.N.2
Ingram, A.K.3
Alsford, S.4
Cross, G.A.M.5
Horn, D.6
-
20
-
-
77956133527
-
Histone deacetylases play distinct roles in telomeric VSG expression site silencing in African trypanosomes
-
Wang QP, Kawahara T, Horn D, Histone deacetylases play distinct roles in telomeric VSG expression site silencing in African trypanosomes. Mol Microbiol. 2010;77: 1237–1245. doi: 10.1111/j.1365-2958.2010.07284.x 20624217
-
(2010)
Mol Microbiol
, vol.77
, pp. 1237-1245
-
-
Wang, Q.P.1
Kawahara, T.2
Horn, D.3
-
21
-
-
67649397588
-
Epigenetic regulation in African trypanosomes: a new kid on the block
-
Figueiredo LM, Cross GAM, Janzen CJ, Epigenetic regulation in African trypanosomes: a new kid on the block. Nat Rev Microbiol. 2009;7: 504–513. doi: 10.1038/nrmicro2149 19528957
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 504-513
-
-
Figueiredo, L.M.1
Cross, G.A.M.2
Janzen, C.J.3
-
22
-
-
78650806593
-
Suppression of inflammation by a synthetic histone mimic
-
Nicodeme E, Jeffrey KL, Schaefer U, Beinke S, Dewell S, Chung C-W, et al. Suppression of inflammation by a synthetic histone mimic. Nature. 2010;468: 1119–1123. doi: 10.1038/nature09589 21068722
-
(2010)
Nature
, vol.468
, pp. 1119-1123
-
-
Nicodeme, E.1
Jeffrey, K.L.2
Schaefer, U.3
Beinke, S.4
Dewell, S.5
Chung, C.-W.6
-
23
-
-
80054984945
-
Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia
-
Dawson MA, Prinjha RK, Dittmann A, Giotopoulos G, Bantscheff M, Chan W-I, et al. Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia. Nature. 2011;478: 529–533. doi: 10.1038/nature10509 21964340
-
(2011)
Nature
, vol.478
, pp. 529-533
-
-
Dawson, M.A.1
Prinjha, R.K.2
Dittmann, A.3
Giotopoulos, G.4
Bantscheff, M.5
Chan, W.-I.6
-
24
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W, Differential expression analysis for sequence count data. Genome Biol. 2010;11: R106. doi: 10.1186/gb-2010-11-10-r106 20979621
-
(2010)
Genome Biol
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
25
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005;102: 15545–15550. 16199517
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
-
26
-
-
36849081968
-
Activation of endocytosis as an adaptation to the mammalian host by trypanosomes
-
Natesan SK, Peacock L, Matthews K, Gibson W, Field MC, Activation of endocytosis as an adaptation to the mammalian host by trypanosomes. Eukaryot Cell. 2007;6: 2029–2037. 17905918
-
(2007)
Eukaryot Cell
, vol.6
, pp. 2029-2037
-
-
Natesan, S.K.1
Peacock, L.2
Matthews, K.3
Gibson, W.4
Field, M.C.5
-
27
-
-
84901322899
-
Expression site attenuation mechanistically links antigenic variation and development in Trypanosoma brucei
-
Batram C, Jones NG, Janzen CJ, Markert SM, Engstler M, Expression site attenuation mechanistically links antigenic variation and development in Trypanosoma brucei. Elife. 2014;3: e02324. doi: 10.7554/eLife.02324 24844706
-
(2014)
Elife
, vol.3
, pp. e02324
-
-
Batram, C.1
Jones, N.G.2
Janzen, C.J.3
Markert, S.M.4
Engstler, M.5
-
28
-
-
55849146248
-
Telomeric expression sites are highly conserved in Trypanosoma brucei
-
Hertz-Fowler C, Figueiredo LM, Quail MA, Becker M, Jackson A, Bason N, et al. Telomeric expression sites are highly conserved in Trypanosoma brucei. PLoS One. 2008;3: e3527. doi: 10.1371/journal.pone.0003527 18953401
-
(2008)
PLoS One
, vol.3
, pp. e3527
-
-
Hertz-Fowler, C.1
Figueiredo, L.M.2
Quail, M.A.3
Becker, M.4
Jackson, A.5
Bason, N.6
-
29
-
-
1642483811
-
Loss of the mono-allelic control of the VSG expression sites during the development of Trypanosoma brucei in the bloodstream
-
Amiguet-Vercher A, Pérez-Morga D, Pays A, Poelvoorde P, Van Xong H, Tebabi P, et al. Loss of the mono-allelic control of the VSG expression sites during the development of Trypanosoma brucei in the bloodstream. Mol Microbiol. 2004;51: 1577–1588. 15009886
-
(2004)
Mol Microbiol
, vol.51
, pp. 1577-1588
-
-
Amiguet-Vercher, A.1
Pérez-Morga, D.2
Pays, A.3
Poelvoorde, P.4
Van Xong, H.5
Tebabi, P.6
-
30
-
-
33745865934
-
Chromatin in pluripotent embryonic stem cells and differentiation
-
Meshorer E, Misteli T, Chromatin in pluripotent embryonic stem cells and differentiation. Nat Rev Mol Cell Biol. 2006;7: 540–546. 16723974
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 540-546
-
-
Meshorer, E.1
Misteli, T.2
-
31
-
-
84870058502
-
Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome
-
Soufi A, Donahue G, Zaret KS, Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome. Cell. 2012;151: 994–1004. doi: 10.1016/j.cell.2012.09.045 23159369
-
(2012)
Cell
, vol.151
, pp. 994-1004
-
-
Soufi, A.1
Donahue, G.2
Zaret, K.S.3
-
32
-
-
84869046968
-
Cell-cycle-regulated control of VSG expression site silencing by histones and histone chaperones ASF1A and CAF-1b in Trypanosoma brucei
-
Alsford S, Horn D, Cell-cycle-regulated control of VSG expression site silencing by histones and histone chaperones ASF1A and CAF-1b in Trypanosoma brucei. Nucleic Acids Res. 2012;40: 10150–10160. doi: 10.1093/nar/gks813 22941664
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 10150-10160
-
-
Alsford, S.1
Horn, D.2
-
33
-
-
78751534394
-
Trypanocidal drugs: mechanisms, resistance and new targets
-
Wilkinson SR, Kelly JM, Trypanocidal drugs: mechanisms, resistance and new targets. Expert Rev Mol Med. 2009;11: e31. doi: 10.1017/S1462399409001252 19863838
-
(2009)
Expert Rev Mol Med
, vol.11
, pp. e31
-
-
Wilkinson, S.R.1
Kelly, J.M.2
-
34
-
-
84866127830
-
Identifying ChIP-seq enrichment using MACS
-
Feng J, Liu T, Qin B, Zhang Y, Liu XS, Identifying ChIP-seq enrichment using MACS. Nat Protoc. 2012;7: 1728–1740. doi: 10.1038/nprot.2012.101 22936215
-
(2012)
Nat Protoc
, vol.7
, pp. 1728-1740
-
-
Feng, J.1
Liu, T.2
Qin, B.3
Zhang, Y.4
Liu, X.S.5
-
35
-
-
65449138352
-
Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei
-
Siegel TN, Hekstra DR, Kemp LE, Figueiredo LM, Lowell JE, Fenyo D, et al. Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei. Genes Dev. 2009;23: 1063–1076. doi: 10.1101/gad.1790409 19369410
-
(2009)
Genes Dev
, vol.23
, pp. 1063-1076
-
-
Siegel, T.N.1
Hekstra, D.R.2
Kemp, L.E.3
Figueiredo, L.M.4
Lowell, J.E.5
Fenyo, D.6
-
36
-
-
84859181036
-
Histone recognition and large-scale structural analysis of the human bromodomain family
-
Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert J-P, Barsyte-Lovejoy D, et al. Histone recognition and large-scale structural analysis of the human bromodomain family. Cell. 2012;149: 214–231. doi: 10.1016/j.cell.2012.02.013 22464331
-
(2012)
Cell
, vol.149
, pp. 214-231
-
-
Filippakopoulos, P.1
Picaud, S.2
Mangos, M.3
Keates, T.4
Lambert, J.-P.5
Barsyte-Lovejoy, D.6
-
37
-
-
8644219648
-
Cold shock and regulation of surface protein trafficking convey sensitization to inducers of stage differentiation in Trypanosoma brucei
-
Engstler M, Boshart M, Cold shock and regulation of surface protein trafficking convey sensitization to inducers of stage differentiation in Trypanosoma brucei. Genes Dev. 2004;18: 2798–2811. 15545633
-
(2004)
Genes Dev
, vol.18
, pp. 2798-2811
-
-
Engstler, M.1
Boshart, M.2
-
38
-
-
0023025407
-
The effect of citrate/cis-aconitate on oxidative metabolism during transformation of Trypanosoma brucei
-
Overath P, Czichos J, Haas C, The effect of citrate/cis-aconitate on oxidative metabolism during transformation of Trypanosoma brucei. Eur J Biochem. 1986;160: 175–182. 3769918
-
(1986)
Eur J Biochem
, vol.160
, pp. 175-182
-
-
Overath, P.1
Czichos, J.2
Haas, C.3
-
39
-
-
0033519641
-
Structure and ligand of a histone acetyltransferase bromodomain
-
Dhalluin C, Carlson JE, Zeng L, He C, Aggarwal AK, Zhou M-M, Structure and ligand of a histone acetyltransferase bromodomain. Nature. 1999;399: 491–496. 10365964
-
(1999)
Nature
, vol.399
, pp. 491-496
-
-
Dhalluin, C.1
Carlson, J.E.2
Zeng, L.3
He, C.4
Aggarwal, A.K.5
Zhou, M.-M.6
-
40
-
-
0034717183
-
Structure and function of a human TAFII250 double bromodomain module
-
Jacobson RH, Ladurner AG, King DS, Tjian R, Structure and function of a human TAFII250 double bromodomain module. Science. 2000;288: 1422–1425. 10827952
-
(2000)
Science
, vol.288
, pp. 1422-1425
-
-
Jacobson, R.H.1
Ladurner, A.G.2
King, D.S.3
Tjian, R.4
-
41
-
-
84866338076
-
Druggability analysis and structural classification of bromodomain acetyl-lysine binding sites
-
Vidler LR, Brown N, Knapp S, Hoelder S, Druggability analysis and structural classification of bromodomain acetyl-lysine binding sites. J Med Chem. 2012;55: 7346–7359. doi: 10.1021/jm300346w 22788793
-
(2012)
J Med Chem
, vol.55
, pp. 7346-7359
-
-
Vidler, L.R.1
Brown, N.2
Knapp, S.3
Hoelder, S.4
-
42
-
-
77958123318
-
Spliced leader trapping reveals widespread alternative splicing patterns in the highly dynamic transcriptome of Trypanosoma brucei
-
Nilsson D, Gunasekera K, Mani J, Osteras M, Farinelli L, Baerlocher L, et al. Spliced leader trapping reveals widespread alternative splicing patterns in the highly dynamic transcriptome of Trypanosoma brucei. PLoS Pathog. 2010;6: e1001037. doi: 10.1371/journal.ppat.1001037 20700444
-
(2010)
PLoS Pathog
, vol.6
, pp. e1001037
-
-
Nilsson, D.1
Gunasekera, K.2
Mani, J.3
Osteras, M.4
Farinelli, L.5
Baerlocher, L.6
-
43
-
-
0029956388
-
Sequences within the 5' untranslated region regulate the levels of a kinetoplast DNA topoisomerase mRNA during the cell cycle
-
Pasion SG, Hines JC, Ou X, Mahmood R, Ray DS, Sequences within the 5' untranslated region regulate the levels of a kinetoplast DNA topoisomerase mRNA during the cell cycle. Mol Cell Biol. 1996;16: 6724–6735. 8943327
-
(1996)
Mol Cell Biol
, vol.16
, pp. 6724-6735
-
-
Pasion, S.G.1
Hines, J.C.2
Ou, X.3
Mahmood, R.4
Ray, D.S.5
-
44
-
-
33846002049
-
Identification and stage-specific association with the translational apparatus of TbZFP3, a CCCH protein that promotes trypanosome life-cycle development
-
Paterou A, Walrad P, Craddy P, Fenn K, Matthews K, Identification and stage-specific association with the translational apparatus of TbZFP3, a CCCH protein that promotes trypanosome life-cycle development. J Biol Chem. 2006;281: 39002–39013. 17043361
-
(2006)
J Biol Chem
, vol.281
, pp. 39002-39013
-
-
Paterou, A.1
Walrad, P.2
Craddy, P.3
Fenn, K.4
Matthews, K.5
-
45
-
-
61449182673
-
Differential trypanosome surface coat regulation by a CCCH protein that co-associates with procyclin mRNA cis-elements
-
Walrad P, Paterou A, Acosta-Serrano A, Matthews KR, Differential trypanosome surface coat regulation by a CCCH protein that co-associates with procyclin mRNA cis-elements. PLoS Pathog. 2009;5: e1000317. doi: 10.1371/journal.ppat.1000317 19247446
-
(2009)
PLoS Pathog
, vol.5
, pp. e1000317
-
-
Walrad, P.1
Paterou, A.2
Acosta-Serrano, A.3
Matthews, K.R.4
-
46
-
-
84870431580
-
Characterization of a novel class I transcription factor A (CITFA) subunit that is indispensable for transcription by the multifunctional RNA polymerase I of Trypanosoma brucei
-
Nguyen TN, Nguyen BN, Lee JH, Panigrahi AK, Günzl A, Characterization of a novel class I transcription factor A (CITFA) subunit that is indispensable for transcription by the multifunctional RNA polymerase I of Trypanosoma brucei. Eukaryot Cell. 2012;11: 1573–1581. doi: 10.1128/EC.00250-12 23104567
-
(2012)
Eukaryot Cell
, vol.11
, pp. 1573-1581
-
-
Nguyen, T.N.1
Nguyen, B.N.2
Lee, J.H.3
Panigrahi, A.K.4
Günzl, A.5
-
47
-
-
84894722803
-
Bloodstream form pre-adaptation to the tsetse fly in Trypanosoma brucei
-
Rico E, Rojas F, Mony BM, Szoor B, MacGregor P, Matthews KR, Bloodstream form pre-adaptation to the tsetse fly in Trypanosoma brucei. Front Cell Infect Microbiol. 2013;3: 78. doi: 10.3389/fcimb.2013.00078 24294594
-
(2013)
Front Cell Infect Microbiol
, vol.3
, pp. 78
-
-
Rico, E.1
Rojas, F.2
Mony, B.M.3
Szoor, B.4
MacGregor, P.5
Matthews, K.R.6
-
48
-
-
33846194528
-
A sirtuin in the African trypanosome is involved in both DNA repair and telomeric gene silencing but is not required for antigenic variation
-
Alsford S, Kawahara T, Isamah C, Horn D, A sirtuin in the African trypanosome is involved in both DNA repair and telomeric gene silencing but is not required for antigenic variation. Mol Microbiol. 2007;63: 724–736. 17214740
-
(2007)
Mol Microbiol
, vol.63
, pp. 724-736
-
-
Alsford, S.1
Kawahara, T.2
Isamah, C.3
Horn, D.4
-
49
-
-
75649110809
-
Nucleosomes are depleted at the VSG expression site transcribed by RNA polymerase I in African trypanosomes
-
Figueiredo LM, Cross GAM, Nucleosomes are depleted at the VSG expression site transcribed by RNA polymerase I in African trypanosomes. Eukaryot Cell. 2010;9: 148–154. doi: 10.1128/EC.00282-09 19915072
-
(2010)
Eukaryot Cell
, vol.9
, pp. 148-154
-
-
Figueiredo, L.M.1
Cross, G.A.M.2
-
50
-
-
33747003677
-
Selective di- or trimethylation of histone H3 lysine 76 by two DOT1 homologs is important for cell cycle regulation in Trypanosoma brucei
-
Janzen CJ, Hake SB, Lowell JE, Cross GAM, Selective di- or trimethylation of histone H3 lysine 76 by two DOT1 homologs is important for cell cycle regulation in Trypanosoma brucei. Mol Cell. 2006;23: 497–507. 16916638
-
(2006)
Mol Cell
, vol.23
, pp. 497-507
-
-
Janzen, C.J.1
Hake, S.B.2
Lowell, J.E.3
Cross, G.A.M.4
-
51
-
-
0033525524
-
A tightly regulated inducible expression system for conditional gene knock-outs and dominant-negative genetics in Trypanosoma brucei
-
Wirtz E, Leal S, Ochatt C, Cross GAM, A tightly regulated inducible expression system for conditional gene knock-outs and dominant-negative genetics in Trypanosoma brucei. Mol Biochem Parasitol. 1999;99: 89–101. 10215027
-
(1999)
Mol Biochem Parasitol
, vol.99
, pp. 89-101
-
-
Wirtz, E.1
Leal, S.2
Ochatt, C.3
Cross, G.A.M.4
-
52
-
-
84874544393
-
MCM-BP is required for repression of life-cycle specific genes transcribed by RNA polymerase I in the mammalian infectious form of Trypanosoma brucei
-
Kim H-S, Park SH, Günzl A, Cross GAM, MCM-BP is required for repression of life-cycle specific genes transcribed by RNA polymerase I in the mammalian infectious form of Trypanosoma brucei. PLoS One. 2013;8: e57001. doi: 10.1371/journal.pone.0057001 23451133
-
(2013)
PLoS One
, vol.8
, pp. e57001
-
-
Kim, H.-S.1
Park, S.H.2
Günzl, A.3
Cross, G.A.M.4
-
53
-
-
84866175736
-
Telomere length affects the frequency and mechanism of antigenic variation in Trypanosoma brucei
-
Hovel-Miner GA, Boothroyd CE, Mugnier M, Dreesen O, Cross GAM, Papavasiliou FN, Telomere length affects the frequency and mechanism of antigenic variation in Trypanosoma brucei. PLoS Pathog. 2012;8: e1002900. doi: 10.1371/journal.ppat.1002900 22952449
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002900
-
-
Hovel-Miner, G.A.1
Boothroyd, C.E.2
Mugnier, M.3
Dreesen, O.4
Cross, G.A.M.5
Papavasiliou, F.N.6
-
54
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10: R25. doi: 10.1186/gb-2009-10-3-r25 19261174
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
55
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9: R137. doi: 10.1186/gb-2008-9-9-r137 18798982
-
(2008)
Genome Biol
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
-
56
-
-
0031059866
-
Processing of X-Ray Diffraction Data Collected in Oscillation Mode
-
Otwinowski Z, Minor W, Processing of X-Ray Diffraction Data Collected in Oscillation Mode. Methods Enzymol. 1997;276: 307–326.
-
(1997)
Methods Enzymol
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
57
-
-
34447508216
-
Phaser crystallographic software
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ, Phaser crystallographic software. J Appl Crystallogr. 2007;40: 658–674. 19461840
-
(2007)
J Appl Crystallogr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
58
-
-
84875433155
-
Visual automated macromolecular model building
-
Langer GG, Hazledine S, Wiegels T, Carolan C, Lamzin VS, Visual automated macromolecular model building. Acta Crystallogr D Biol Crystallogr. 2013;69: 635–641. doi: 10.1107/S0907444913000565 23519672
-
(2013)
Acta Crystallogr D Biol Crystallogr
, vol.69
, pp. 635-641
-
-
Langer, G.G.1
Hazledine, S.2
Wiegels, T.3
Carolan, C.4
Lamzin, V.S.5
-
59
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones TA, Zou J-Y, Cowan SW, Kjeldgaard M, Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A. 1991;47: 110–119. 2025413
-
(1991)
Acta Crystallogr A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
60
-
-
77949535720
-
Features and development of Coot
-
Emsley P, Lohkamp B, Scott WG, Cowtan K, Features and development of Coot. Acta Crystallogr D Biol Crystallogr. 2010;66: 486–501. doi: 10.1107/S0907444910007493 20383002
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
61
-
-
80053642374
-
The Phenix software for automated determination of macromolecular structures
-
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Echols N, Headd JJ, et al. The Phenix software for automated determination of macromolecular structures. Methods. 2011;55: 94–106. doi: 10.1016/j.ymeth.2011.07.005 21821126
-
(2011)
Methods
, vol.55
, pp. 94-106
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Echols, N.5
Headd, J.J.6
-
62
-
-
34547592557
-
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
-
Davis IW, Leaver-Fay A, Chen VB, Block JN, Kapral GJ, Wang X, et al. MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res. 2007;35: W375–383. 17452350
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W375-383
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
|