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Volumn 3, Issue 10, 2008, Pages

Telomeric expression sites are highly conserved in Trypanosoma brucei

(28)  Hertz Fowler, Christiane a   Figueiredo, Luisa M b   Quail, Michael A a   Becker, Marion c   Jackson, Andrew a   Bason, Nathalie a   Brooks, Karen a   Churcher, Carol a   Fahkro, Samah a   Goodhead, Ian a,g   Heath, Paul a   Kartvelishvili, Magdalena b   Mungall, Karen a   Harris, David a   Hauser, Heidi a   Sanders, Mandy a   Saunders, David a   Seeger, Kathy a   Sharp, Sarah c   Taylor, Jesse E d   more..


Author keywords

[No Author keywords available]

Indexed keywords

BLOODSTREAM EXPRESSION SITE; EXPRESSION SITE ASSOCIATED PROTEIN; MEMBRANE PROTEIN; PROTOZOAL PROTEIN; UNCLASSIFIED DRUG; VARIANT SURFACE GLYCOPROTEIN;

EID: 55849146248     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0003527     Document Type: Article
Times cited : (227)

References (58)
  • 1
    • 0036244955 scopus 로고    scopus 로고
    • The complex structure and dynamic evolution of human subtelomeres
    • Mefford HC, Trask BJ (2002) The complex structure and dynamic evolution of human subtelomeres. Nat Rev Genet 3: 91-102.
    • (2002) Nat Rev Genet , vol.3 , pp. 91-102
    • Mefford, H.C.1    Trask, B.J.2
  • 2
    • 23944464017 scopus 로고    scopus 로고
    • The central roles of telomeres and subtelomeres in antigenic variation in African trypanosomes
    • Horn D, Barry JD (2005) The central roles of telomeres and subtelomeres in antigenic variation in African trypanosomes. Chromosome Res 13: 525-533.
    • (2005) Chromosome Res , vol.13 , pp. 525-533
    • Horn, D.1    Barry, J.D.2
  • 3
    • 43249118838 scopus 로고    scopus 로고
    • Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, et al. (2008) Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. PLoS Genet 4 e1000046.
    • Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, et al. (2008) Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus. PLoS Genet 4 e1000046.
  • 5
    • 26844506268 scopus 로고    scopus 로고
    • Regulation of antigen gene expression in Trypanosoma brucei
    • Pays E (2005) Regulation of antigen gene expression in Trypanosoma brucei. Trends Parasitol 21: 517-520.
    • (2005) Trends Parasitol , vol.21 , pp. 517-520
    • Pays, E.1
  • 6
    • 0029951447 scopus 로고    scopus 로고
    • DNA rearrangements associated with multiple consecutive directed antigenic switches in Trypanosoma brucei
    • Navarro M, Cross GA (1996) DNA rearrangements associated with multiple consecutive directed antigenic switches in Trypanosoma brucei. Mol Cell Biol 16: 3615-3625.
    • (1996) Mol Cell Biol , vol.16 , pp. 3615-3625
    • Navarro, M.1    Cross, G.A.2
  • 8
    • 0035946414 scopus 로고    scopus 로고
    • The VSG expression sites of Trypanosoma brucei: Multipurpose tools for the adaptation of the parasite to mammalian hosts
    • Pays E, Lips S, Nolan D, Vanhamme L, Perez-Morga D (2001) The VSG expression sites of Trypanosoma brucei: multipurpose tools for the adaptation of the parasite to mammalian hosts. Mol Biochem Parasitol 114: 1-16.
    • (2001) Mol Biochem Parasitol , vol.114 , pp. 1-16
    • Pays, E.1    Lips, S.2    Nolan, D.3    Vanhamme, L.4    Perez-Morga, D.5
  • 9
    • 0026558281 scopus 로고
    • A gene from the variant surface glycoprotein expression site encodes one of several transmembrane adenylate cyclases located on the flagellum of Trypanosoma brucei
    • Paindavoine P, Rolin S, Van Assel S, Geuskens M, Jauniaux JC, et al. (1992) A gene from the variant surface glycoprotein expression site encodes one of several transmembrane adenylate cyclases located on the flagellum of Trypanosoma brucei. Mol Cell Biol 12: 1218-1225.
    • (1992) Mol Cell Biol , vol.12 , pp. 1218-1225
    • Paindavoine, P.1    Rolin, S.2    Van Assel, S.3    Geuskens, M.4    Jauniaux, J.C.5
  • 10
    • 0028362270 scopus 로고
    • Reconstitution of a surface transferrin binding complex in insect form Trypanosoma brucei
    • Ligtenberg MJ, Bitter W, Kieft R, Steverding D, Janssen H, et al. (1994) Reconstitution of a surface transferrin binding complex in insect form Trypanosoma brucei. Embo J 13: 2565-2573.
    • (1994) Embo J , vol.13 , pp. 2565-2573
    • Ligtenberg, M.J.1    Bitter, W.2    Kieft, R.3    Steverding, D.4    Janssen, H.5
  • 11
    • 0031435151 scopus 로고    scopus 로고
    • Characterization of the ligand-binding site of the transferrin receptor in Trypanosoma brucei demonstrates a structural relationship with the N-terminal domain of the variant surface glycoprotein
    • Salmon D, Hanocq-Quertier J, Paturiaux-Hanocq F, Pays A, Tebabi P, et al. (1997) Characterization of the ligand-binding site of the transferrin receptor in Trypanosoma brucei demonstrates a structural relationship with the N-terminal domain of the variant surface glycoprotein. Embo J 16: 7272-7278.
    • (1997) Embo J , vol.16 , pp. 7272-7278
    • Salmon, D.1    Hanocq-Quertier, J.2    Paturiaux-Hanocq, F.3    Pays, A.4    Tebabi, P.5
  • 12
    • 0034472569 scopus 로고    scopus 로고
    • Expression-site-associated gene 8 (ESAG8) of Trypanosoma brucei is apparently essential and accumulates in the nucleolus
    • Hoek M, Engstler M, Cross GA (2000) Expression-site-associated gene 8 (ESAG8) of Trypanosoma brucei is apparently essential and accumulates in the nucleolus. J Cell Sci 113(Pt 22): 3959-3968.
    • (2000) J Cell Sci , vol.113 , Issue.PART 22 , pp. 3959-3968
    • Hoek, M.1    Engstler, M.2    Cross, G.A.3
  • 13
    • 0037046097 scopus 로고    scopus 로고
    • Trypanosoma brucei expression-site-associated-gene 8 protein interacts with a Pumilio family protein
    • Hoek M, Zanders T, Cross GAM (2002) Trypanosoma brucei expression-site-associated-gene 8 protein interacts with a Pumilio family protein. Mol Biochem Parasitol 120: 269-283.
    • (2002) Mol Biochem Parasitol , vol.120 , pp. 269-283
    • Hoek, M.1    Zanders, T.2    Cross, G.A.M.3
  • 14
    • 0028009792 scopus 로고
    • A new VSG expression site-associated gene (ESAG) in the promoter region of Trypanosoma brucei encodes a protein with 10 potential transmembrane domains
    • Gottesdiener KM (1994) A new VSG expression site-associated gene (ESAG) in the promoter region of Trypanosoma brucei encodes a protein with 10 potential transmembrane domains. Mol Biochem Parasitol 63: 143-151.
    • (1994) Mol Biochem Parasitol , vol.63 , pp. 143-151
    • Gottesdiener, K.M.1
  • 15
    • 0026022094 scopus 로고
    • A family of genes related to a new expression site-associated gene in Trypanosoma equiperdum
    • Florent IC, Raibaud A, Eisen H (1991) A family of genes related to a new expression site-associated gene in Trypanosoma equiperdum. Mol Cell Biol 11: 2180-2188.
    • (1991) Mol Cell Biol , vol.11 , pp. 2180-2188
    • Florent, I.C.1    Raibaud, A.2    Eisen, H.3
  • 16
    • 0030592441 scopus 로고    scopus 로고
    • Targeted disruption of expression site-associated gene-1 in bloodstream-form Trypanosoma brucei
    • Carruthers VB, Navarro M, Cross GA (1996) Targeted disruption of expression site-associated gene-1 in bloodstream-form Trypanosoma brucei. Mol Biochem Parasitol 81: 65-79.
    • (1996) Mol Biochem Parasitol , vol.81 , pp. 65-79
    • Carruthers, V.B.1    Navarro, M.2    Cross, G.A.3
  • 17
    • 0029887669 scopus 로고    scopus 로고
    • Differential expression of the expression site-associated gene I family in African trypanosomes
    • Morgan RW, El-Sayed NM, Kepa JK, Pedram M, Donelson JE (1996) Differential expression of the expression site-associated gene I family in African trypanosomes. J Biol Chem 271: 9771-9777.
    • (1996) J Biol Chem , vol.271 , pp. 9771-9777
    • Morgan, R.W.1    El-Sayed, N.M.2    Kepa, J.K.3    Pedram, M.4    Donelson, J.E.5
  • 19
    • 8744298412 scopus 로고    scopus 로고
    • Isolation of the repertoire of VSG expression site containing telomeres of Trypanosoma brucei 427 using transformation-associated recombination in yeast
    • Becker M, Aitcheson N, Byles E, Wickstead B, Louis E, et al. (2004) Isolation of the repertoire of VSG expression site containing telomeres of Trypanosoma brucei 427 using transformation-associated recombination in yeast. Genome Res 14: 2319-2329.
    • (2004) Genome Res , vol.14 , pp. 2319-2329
    • Becker, M.1    Aitcheson, N.2    Byles, E.3    Wickstead, B.4    Louis, E.5
  • 20
    • 0028809565 scopus 로고
    • A ribosomal DNA promoter replacing the promoter of a telomeric VSG gene expression site can be efficiently switched on and off in T. brucei
    • Rudenko G, Blundell PA, Dirks-Mulder A, Kieft R, Borst P (1995) A ribosomal DNA promoter replacing the promoter of a telomeric VSG gene expression site can be efficiently switched on and off in T. brucei. Cell 83: 547-553.
    • (1995) Cell , vol.83 , pp. 547-553
    • Rudenko, G.1    Blundell, P.A.2    Dirks-Mulder, A.3    Kieft, R.4    Borst, P.5
  • 21
    • 0034492653 scopus 로고    scopus 로고
    • The molecular karyotype of the megabase chromosomes of Trypanosoma brucei stock 427
    • Melville SE, Leech V, Navarro M, Cross GAM (2000) The molecular karyotype of the megabase chromosomes of Trypanosoma brucei stock 427. Mol Biochem Parasitol 111: 261-273.
    • (2000) Mol Biochem Parasitol , vol.111 , pp. 261-273
    • Melville, S.E.1    Leech, V.2    Navarro, M.3    Cross, G.A.M.4
  • 22
    • 0032168225 scopus 로고    scopus 로고
    • Selection for activation of a new variant surface glycoprotein gene expression site in Trypanosoma brucei can result in deletion of the old one
    • Rudenko G, Chaves I, Dirks-Mulder A, Borst P (1998) Selection for activation of a new variant surface glycoprotein gene expression site in Trypanosoma brucei can result in deletion of the old one. Mol Biochem Parasitol 95: 97-109.
    • (1998) Mol Biochem Parasitol , vol.95 , pp. 97-109
    • Rudenko, G.1    Chaves, I.2    Dirks-Mulder, A.3    Borst, P.4
  • 23
    • 0021045630 scopus 로고
    • Modifications of a Trypanosoma b. brucei antigen gene repertoire by different DNA recombinational mechanisms
    • Pays E, Delauw MF, Van Assel S, Laurent M, Vervoort T, et al. (1983) Modifications of a Trypanosoma b. brucei antigen gene repertoire by different DNA recombinational mechanisms. Cell 35: 721-731.
    • (1983) Cell , vol.35 , pp. 721-731
    • Pays, E.1    Delauw, M.F.2    Van Assel, S.3    Laurent, M.4    Vervoort, T.5
  • 24
    • 0031961882 scopus 로고    scopus 로고
    • Frequent loss of the active site during variant surface glycoprotein expression site switching in vitro in Trypanosoma brucei
    • Cross M, Taylor MC, Borst P (1998) Frequent loss of the active site during variant surface glycoprotein expression site switching in vitro in Trypanosoma brucei. Molecular & Cellular Biology 18: 198-205.
    • (1998) Molecular & Cellular Biology , vol.18 , pp. 198-205
    • Cross, M.1    Taylor, M.C.2    Borst, P.3
  • 26
    • 0022577541 scopus 로고
    • Analysis of antigen switching rates in Trypanosoma brucei
    • Lamont GS, Tucker RS, Cross GAM (1986) Analysis of antigen switching rates in Trypanosoma brucei. Parasitology 92: 355-367.
    • (1986) Parasitology , vol.92 , pp. 355-367
    • Lamont, G.S.1    Tucker, R.S.2    Cross, G.A.M.3
  • 27
    • 0036069647 scopus 로고    scopus 로고
    • The architecture of variant surface glycoprotein gene expression sites in Trypanosoma brucei
    • Berriman M, Hall N, Sheader K, Bringaud F, Tiwari B, et al. (2002) The architecture of variant surface glycoprotein gene expression sites in Trypanosoma brucei. Mol Biochem Parasitol 122: 131-140.
    • (2002) Mol Biochem Parasitol , vol.122 , pp. 131-140
    • Berriman, M.1    Hall, N.2    Sheader, K.3    Bringaud, F.4    Tiwari, B.5
  • 28
    • 0026687783 scopus 로고
    • A proposed mechanism for promoter-associated DNA rearrangement events at a variant surface glycoprotein gene expression site
    • Gottesdiener KM, Goriparthi L, Masucci JP, Van der Ploeg LH (1992) A proposed mechanism for promoter-associated DNA rearrangement events at a variant surface glycoprotein gene expression site. Mol Cell Biol 12: 4784-4795.
    • (1992) Mol Cell Biol , vol.12 , pp. 4784-4795
    • Gottesdiener, K.M.1    Goriparthi, L.2    Masucci, J.P.3    Van der Ploeg, L.H.4
  • 29
    • 0033062624 scopus 로고    scopus 로고
    • Transcription of 'inactive' expression sites in African trypanosomes leads to expression of multiple transferrin receptor RNAs in bloodstream forms
    • Ansorge I, Steverding D, Melville S, Hartmann C, Clayton C (1999) Transcription of 'inactive' expression sites in African trypanosomes leads to expression of multiple transferrin receptor RNAs in bloodstream forms. Mol Biochem Parasitol 101: 81-94.
    • (1999) Mol Biochem Parasitol , vol.101 , pp. 81-94
    • Ansorge, I.1    Steverding, D.2    Melville, S.3    Hartmann, C.4    Clayton, C.5
  • 30
    • 34548396688 scopus 로고    scopus 로고
    • Analysis of the VSG gene silent archive in Trypanosoma brucei reveals that mosaic gene expression is prominent in antigenic variation and is favored by archive substructure
    • Marcello L, Barry JD (2007) Analysis of the VSG gene silent archive in Trypanosoma brucei reveals that mosaic gene expression is prominent in antigenic variation and is favored by archive substructure. Genome Res 17: 1344-1352.
    • (2007) Genome Res , vol.17 , pp. 1344-1352
    • Marcello, L.1    Barry, J.D.2
  • 32
    • 33646167864 scopus 로고    scopus 로고
    • A simple and robust statistical test for detecting the presence of recombination
    • Bruen TC, Philippe H, Bryant D (2006) A simple and robust statistical test for detecting the presence of recombination. Genetics 172: 2665-2681.
    • (2006) Genetics , vol.172 , pp. 2665-2681
    • Bruen, T.C.1    Philippe, H.2    Bryant, D.3
  • 33
    • 0032145092 scopus 로고    scopus 로고
    • The molecular karyotype of the megabase chromosomes of Trypanosoma brucei and the assignment of chromosome markers
    • Melville SE, Leech V, Gerrard CS, Tait A, Blackwell JM (1998) The molecular karyotype of the megabase chromosomes of Trypanosoma brucei and the assignment of chromosome markers. Molecular & Biochemical Parasitology 94: 155-173.
    • (1998) Molecular & Biochemical Parasitology , vol.94 , pp. 155-173
    • Melville, S.E.1    Leech, V.2    Gerrard, C.S.3    Tait, A.4    Blackwell, J.M.5
  • 34
    • 33748280640 scopus 로고    scopus 로고
    • Hemizygous subtelomeres of an African trypanosome chromosome may account for over 75% of chromosome length
    • Callejas S, Leech V, Reitter C, Melville S (2006) Hemizygous subtelomeres of an African trypanosome chromosome may account for over 75% of chromosome length. Genome Res 16: 1109-1118.
    • (2006) Genome Res , vol.16 , pp. 1109-1118
    • Callejas, S.1    Leech, V.2    Reitter, C.3    Melville, S.4
  • 35
    • 33746440348 scopus 로고    scopus 로고
    • Chromosome breakage and repair
    • Haber JE (2006) Chromosome breakage and repair. Genetics 173: 1181-1185.
    • (2006) Genetics , vol.173 , pp. 1181-1185
    • Haber, J.E.1
  • 36
    • 0032423741 scopus 로고    scopus 로고
    • A VSG expression site-associated gene confers resistance to human serum in Trypanosoma rhodesiense
    • Xong HV, Vanhamme L, Chamekh M, Chimfwembe CE, Van Den Abbeele J, et al. (1998) A VSG expression site-associated gene confers resistance to human serum in Trypanosoma rhodesiense. Cell 95: 839-846.
    • (1998) Cell , vol.95 , pp. 839-846
    • Xong, H.V.1    Vanhamme, L.2    Chamekh, M.3    Chimfwembe, C.E.4    Van Den Abbeele, J.5
  • 37
    • 0034106940 scopus 로고    scopus 로고
    • Differential RNA elongation controls the variant surface glycoprotein gene expression sites of Trypanosoma brucei
    • Vanhamme L, Poelvoorde P, Pays A, Tebabi P, Van Xong H, et al. (2000) Differential RNA elongation controls the variant surface glycoprotein gene expression sites of Trypanosoma brucei. Mol Microbiol 36: 328-340.
    • (2000) Mol Microbiol , vol.36 , pp. 328-340
    • Vanhamme, L.1    Poelvoorde, P.2    Pays, A.3    Tebabi, P.4    Van Xong, H.5
  • 38
    • 26244464871 scopus 로고    scopus 로고
    • Trypanosomes change their transferrin receptor expression to allow effective uptake of host transferrin
    • van Luenen HG, Kieft R, Mussmann R, Engstler M, ter Riet B, et al. (2005) Trypanosomes change their transferrin receptor expression to allow effective uptake of host transferrin. Mol Microbiol 58: 151-165.
    • (2005) Mol Microbiol , vol.58 , pp. 151-165
    • van Luenen, H.G.1    Kieft, R.2    Mussmann, R.3    Engstler, M.4    ter Riet, B.5
  • 39
    • 34250863858 scopus 로고    scopus 로고
    • Trypanosoma brucei homologous recombination is dependent on substrate length and homology, though displays a differential dependence on mismatch repair as substrate length decreases
    • Barnes RL, McCulloch R (2007) Trypanosoma brucei homologous recombination is dependent on substrate length and homology, though displays a differential dependence on mismatch repair as substrate length decreases. Nucleic Acids Res 35: 3478-3493.
    • (2007) Nucleic Acids Res , vol.35 , pp. 3478-3493
    • Barnes, R.L.1    McCulloch, R.2
  • 40
  • 41
    • 20844442483 scopus 로고    scopus 로고
    • Variant surface glycoprotein RNA interference triggers a precytokinesis cell cycle arrest in African trypanosomes
    • Sheader K, Vaughan S, Minchin J, Hughes K, Gull K, et al. (2005) Variant surface glycoprotein RNA interference triggers a precytokinesis cell cycle arrest in African trypanosomes. Proc Natl Acad Sci U S A 102: 8716-8721.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 8716-8721
    • Sheader, K.1    Vaughan, S.2    Minchin, J.3    Hughes, K.4    Gull, K.5
  • 42
    • 0030249772 scopus 로고    scopus 로고
    • Telomere exchange can be an important mechanism of variant surface glycoprotein gene switching in Trypanosoma brucei
    • Rudenko G, McCulloch R, Dirks-Mulder A, Borst P (1996) Telomere exchange can be an important mechanism of variant surface glycoprotein gene switching in Trypanosoma brucei. Mol Biochem Parasitol 80: 65-75.
    • (1996) Mol Biochem Parasitol , vol.80 , pp. 65-75
    • Rudenko, G.1    McCulloch, R.2    Dirks-Mulder, A.3    Borst, P.4
  • 43
    • 34247506767 scopus 로고    scopus 로고
    • Tandem gene arrays in Trypanosoma brucei: Comparative phylogenomic analysis of duplicate sequence variation
    • Jackson AP (2007) Tandem gene arrays in Trypanosoma brucei: comparative phylogenomic analysis of duplicate sequence variation. BMC Evol Biol 7: 54.
    • (2007) BMC Evol Biol , vol.7 , pp. 54
    • Jackson, A.P.1
  • 44
    • 33845605494 scopus 로고    scopus 로고
    • Telomere structure and function in trypanosomes: A proposal
    • Dreesen O, Li B, Cross GA (2007) Telomere structure and function in trypanosomes: a proposal. Nat Rev Microbiol 5: 70-75.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 70-75
    • Dreesen, O.1    Li, B.2    Cross, G.A.3
  • 45
    • 0018791006 scopus 로고
    • Selective cleavage of variant surface glycoproteins from Trypanosoma brucei
    • Johnson JG, Cross GA (1979) Selective cleavage of variant surface glycoproteins from Trypanosoma brucei. Biochem J 178: 689-697.
    • (1979) Biochem J , vol.178 , pp. 689-697
    • Johnson, J.G.1    Cross, G.A.2
  • 46
    • 0024948840 scopus 로고
    • Continuous cultivation of Trypanosoma brucei blood stream forms in a medium containing a low concentration of serum protein without feeder cell layers
    • Hirumi H, Hirumi K (1989) Continuous cultivation of Trypanosoma brucei blood stream forms in a medium containing a low concentration of serum protein without feeder cell layers. J Parasitol 75: 985-989.
    • (1989) J Parasitol , vol.75 , pp. 985-989
    • Hirumi, H.1    Hirumi, K.2
  • 47
    • 0027969338 scopus 로고
    • Gene expression mediated by bacteriophage T3 and T7 RNA polymerases in transgenic trypanosomes
    • Wirtz E, Hartmann C, Clayton C (1994) Gene expression mediated by bacteriophage T3 and T7 RNA polymerases in transgenic trypanosomes. Nucleic Acids Res 22: 3887-3894.
    • (1994) Nucleic Acids Res , vol.22 , pp. 3887-3894
    • Wirtz, E.1    Hartmann, C.2    Clayton, C.3
  • 48
    • 3242725328 scopus 로고    scopus 로고
    • Separation, digestion, and cloning of intact parasite chromosomes embedded in agarose
    • Leech V, Quail MA, Melville SE (2004) Separation, digestion, and cloning of intact parasite chromosomes embedded in agarose. Methods Mol Biol 270: 335-352.
    • (2004) Methods Mol Biol , vol.270 , pp. 335-352
    • Leech, V.1    Quail, M.A.2    Melville, S.E.3
  • 50
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 51
    • 33745447782 scopus 로고    scopus 로고
    • Telomerase-independent stabilization of short telomeres in Trypanosoma brucei
    • Dreesen O, Cross GA (2006) Telomerase-independent stabilization of short telomeres in Trypanosoma brucei. Mol Cell Biol 26: 4911-4919.
    • (2006) Mol Cell Biol , vol.26 , pp. 4911-4919
    • Dreesen, O.1    Cross, G.A.2
  • 52
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 53
    • 23144433822 scopus 로고    scopus 로고
    • PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference
    • Guindon S, Lethiec F, Duroux P, Gascuel O (2005) PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33: W557-559.
    • (2005) Nucleic Acids Res , vol.33
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 54
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • Shimodaira H, Hasegawa M (2001) CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246-1247.
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 55
    • 15844406550 scopus 로고    scopus 로고
    • HyPhy: Hypothesis testing using phylogenies
    • Pond SL, Frost SD, Muse SV (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21: 676-679.
    • (2005) Bioinformatics , vol.21 , pp. 676-679
    • Pond, S.L.1    Frost, S.D.2    Muse, S.V.3
  • 56
    • 33749827106 scopus 로고    scopus 로고
    • Robust inference of positive selection from recombining coding sequences
    • Scheffler K, Martin DP, Seoighe C (2006) Robust inference of positive selection from recombining coding sequences. Bioinformatics 22: 2493-2499.
    • (2006) Bioinformatics , vol.22 , pp. 2493-2499
    • Scheffler, K.1    Martin, D.P.2    Seoighe, C.3
  • 57
    • 8544225780 scopus 로고    scopus 로고
    • Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
    • Wong WS, Yang Z, Goldman N, Nielsen R (2004) Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics 168: 1041-1051.
    • (2004) Genetics , vol.168 , pp. 1041-1051
    • Wong, W.S.1    Yang, Z.2    Goldman, N.3    Nielsen, R.4
  • 58
    • 25144506072 scopus 로고    scopus 로고
    • VSG switching in Trypanosoma brucei: Antigenic variation analysed using RNAi in the absence of immune selection
    • Aitcheson N, Talbot S, Shapiro J, Hughes K, Adkin C, et al. (2005) VSG switching in Trypanosoma brucei: antigenic variation analysed using RNAi in the absence of immune selection. Mol Microbiol 57: 1608-1622.
    • (2005) Mol Microbiol , vol.57 , pp. 1608-1622
    • Aitcheson, N.1    Talbot, S.2    Shapiro, J.3    Hughes, K.4    Adkin, C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.