-
1
-
-
84934965251
-
Leishmania survival in the macrophage: where the ends justify the means
-
Arango Duque G, Descoteaux A. Leishmania survival in the macrophage: where the ends justify the means. Curr Opin Microbiol. 2015;26:32-40.
-
(2015)
Curr Opin Microbiol.
, vol.26
, pp. 32-40
-
-
Arango Duque, G.1
Descoteaux, A.2
-
4
-
-
84948411292
-
Long-Term Relationships: the Complicated Interplay between the Host and the Developmental Stages of Toxoplasma gondii during Acute and Chronic Infections
-
Pittman KJ, Knoll LJ. Long-Term Relationships: the Complicated Interplay between the Host and the Developmental Stages of Toxoplasma gondii during Acute and Chronic Infections. Microbiol Mol Biol Rev. 2015;79:387-401.
-
(2015)
Microbiol Mol Biol Rev
, vol.79
, pp. 387-401
-
-
Pittman, K.J.1
Knoll, L.J.2
-
5
-
-
31844445394
-
Ehrlichia subversion of host innate responses
-
Rikihisa Y. Ehrlichia subversion of host innate responses. Curr Opin Microbiol. 2006;9:95-101.
-
(2006)
Curr Opin Microbiol
, vol.9
, pp. 95-101
-
-
Rikihisa, Y.1
-
6
-
-
84938243731
-
Innate Immune Defenses in Human Tuberculosis: An Overview of the Interactions between Mycobacterium tuberculosis and Innate Immune Cells
-
Sia JK, Georgieva M, Rengarajan J. Innate Immune Defenses in Human Tuberculosis: An Overview of the Interactions between Mycobacterium tuberculosis and Innate Immune Cells. J Immunol Res. 2015;2015:747543.
-
(2015)
J Immunol Res
, vol.2015
, pp. 747543
-
-
Sia, J.K.1
Georgieva, M.2
Rengarajan, J.3
-
7
-
-
84946573851
-
Subversion of Cell-Autonomous Immunity and Cell Migration by Legionella pneumophila Effectors
-
Simon S, Hilbi H. Subversion of Cell-Autonomous Immunity and Cell Migration by Legionella pneumophila Effectors. Front Immunol. 2015;6:447.
-
(2015)
Front Immunol
, vol.6
, pp. 447
-
-
Simon, S.1
Hilbi, H.2
-
8
-
-
84861665791
-
Leishmaniasis worldwide and global estimates of its incidence
-
Alvar J, Vélez ID, Bern C, Herrero M, Desjeux P, Cano J, et al. Leishmaniasis worldwide and global estimates of its incidence. PLoS One. 2012;7, e35671.
-
(2012)
PLoS One
, vol.7
-
-
Alvar, J.1
Vélez, I.D.2
Bern, C.3
Herrero, M.4
Desjeux, P.5
Cano, J.6
-
9
-
-
0034686436
-
Fibroblasts as host cells in latent leishmaniosis
-
Bogdan C, Donhauser N, Döring R, Röllinghoff M, Diefenbach A, Rittig MG. Fibroblasts as host cells in latent leishmaniosis. J Exp Med. 2000;191:2121-30.
-
(2000)
J Exp Med
, vol.191
, pp. 2121-2130
-
-
Bogdan, C.1
Donhauser, N.2
Döring, R.3
Röllinghoff, M.4
Diefenbach, A.5
Rittig, M.G.6
-
10
-
-
0036156249
-
Intracellular survival of Leishmania major in neutrophil granulocytes after uptake in the absence of heat-labile serum factors
-
Laufs H, Müller K, Fleischer J, Reiling N, Jahnke N, Jensenius JC, et al. Intracellular survival of Leishmania major in neutrophil granulocytes after uptake in the absence of heat-labile serum factors. Infect Immun. 2002;70:826-35.
-
(2002)
Infect Immun
, vol.70
, pp. 826-835
-
-
Laufs, H.1
Müller, K.2
Fleischer, J.3
Reiling, N.4
Jahnke, N.5
Jensenius, J.C.6
-
11
-
-
0028949382
-
Dendritic cells in Leishmania major-immune mice harbor persistent parasites and mediate an antigen-specific T cell immune response
-
Moll H, Flohé S, Röllinghoff M. Dendritic cells in Leishmania major-immune mice harbor persistent parasites and mediate an antigen-specific T cell immune response. Eur J Immunol. 1995;25:693-9.
-
(1995)
Eur J Immunol
, vol.25
, pp. 693-699
-
-
Moll, H.1
Flohé, S.2
Röllinghoff, M.3
-
12
-
-
49649116869
-
In vivo imaging reveals an essential role for neutrophils in leishmaniasis transmitted by sand flies
-
Peters NC, Egen JG, Secundino N, Debrabant A, Kimblin N, Kamhawi S, et al. In vivo imaging reveals an essential role for neutrophils in leishmaniasis transmitted by sand flies. Science. 2008;321:970-4.
-
(2008)
Science
, vol.321
, pp. 970-974
-
-
Peters, N.C.1
Egen, J.G.2
Secundino, N.3
Debrabant, A.4
Kimblin, N.5
Kamhawi, S.6
-
13
-
-
84873407183
-
Infection of neutrophil granulocytes with Leishmania major activates ERK 1/2 and modulates multiple apoptotic pathways to inhibit apoptosis
-
Sarkar A, Aga E, Bussmeyer U, Bhattacharyya A, Möller S, Hellberg L, et al. Infection of neutrophil granulocytes with Leishmania major activates ERK 1/2 and modulates multiple apoptotic pathways to inhibit apoptosis. Med Microbiol Immunol. 2013;202:25-35.
-
(2013)
Med Microbiol Immunol
, vol.202
, pp. 25-35
-
-
Sarkar, A.1
Aga, E.2
Bussmeyer, U.3
Bhattacharyya, A.4
Möller, S.5
Hellberg, L.6
-
14
-
-
80055106263
-
Morphological events during the cell cycle of Leishmania major
-
Ambit A, Woods KL, Cull B, Coombs GH, Mottram JC. Morphological events during the cell cycle of Leishmania major. Eukaryot Cell. 2011;10:1429-38.
-
(2011)
Eukaryot Cell
, vol.10
, pp. 1429-1438
-
-
Ambit, A.1
Woods, K.L.2
Cull, B.3
Coombs, G.H.4
Mottram, J.C.5
-
15
-
-
0031939025
-
Lipophosphoglycan (LPG) and the identification of virulence genes in the protozoan parasite Leishmania
-
Beverley SM, Turco SJ. Lipophosphoglycan (LPG) and the identification of virulence genes in the protozoan parasite Leishmania. Trends Microbiol. 1998;6:35-40.
-
(1998)
Trends Microbiol
, vol.6
, pp. 35-40
-
-
Beverley, S.M.1
Turco, S.J.2
-
16
-
-
78751700188
-
The cell cycle of Leishmania: morphogenetic events and their implications for parasite biology
-
Wheeler RJ, Gluenz E, Gull K. The cell cycle of Leishmania: morphogenetic events and their implications for parasite biology. Mol Microbiol. 2011;79:647-62.
-
(2011)
Mol Microbiol
, vol.79
, pp. 647-662
-
-
Wheeler, R.J.1
Gluenz, E.2
Gull, K.3
-
17
-
-
0031966345
-
Progressive disease or protective immunity to Leishmania major infection: the result of a network of stimulatory and inhibitory interactions
-
Etges R, Müller I. Progressive disease or protective immunity to Leishmania major infection: the result of a network of stimulatory and inhibitory interactions. J Mol Med. 1998;76:372-90.
-
(1998)
J Mol Med
, vol.76
, pp. 372-390
-
-
Etges, R.1
Müller, I.2
-
18
-
-
0028933795
-
The regulation of immunity to Leishmania major
-
Reiner SL, Locksley RM. The regulation of immunity to Leishmania major. Annu Rev Immunol. 1995;13:151-77.
-
(1995)
Annu Rev Immunol
, vol.13
, pp. 151-177
-
-
Reiner, S.L.1
Locksley, R.M.2
-
19
-
-
0028940974
-
The role of the innate immune response in Th1 cell development following Leishmania major infection
-
Scharton-Kersten T, Scott P. The role of the innate immune response in Th1 cell development following Leishmania major infection. J Leukoc Biol. 1995;57:515-22.
-
(1995)
J Leukoc Biol
, vol.57
, pp. 515-522
-
-
Scharton-Kersten, T.1
Scott, P.2
-
20
-
-
0035076991
-
Silent infection of bone marrow-derived dendritic cells by Leishmania mexicana amastigotes
-
Bennett CL, Misslitz A, Colledge L, Aebischer T, Blackburn CC. Silent infection of bone marrow-derived dendritic cells by Leishmania mexicana amastigotes. Eur J Immunol. 2001;31:876-83.
-
(2001)
Eur J Immunol
, vol.31
, pp. 876-883
-
-
Bennett, C.L.1
Misslitz, A.2
Colledge, L.3
Aebischer, T.4
Blackburn, C.C.5
-
21
-
-
0037674823
-
Neutrophil granulocytes--Trojan horses for Leishmania major and other intracellular microbes?
-
Laskay T, van Zandbergen G, Solbach W. Neutrophil granulocytes--Trojan horses for Leishmania major and other intracellular microbes? Trends Microbiol. 2003;11:210-4.
-
(2003)
Trends Microbiol
, vol.11
, pp. 210-214
-
-
Laskay, T.1
Zandbergen, G.2
Solbach, W.3
-
22
-
-
0023840748
-
Cutaneous host defense in leishmaniasis: interaction of isolated dermal macrophages and epidermal Langerhans cells with the insect-stage promastigote
-
Locksley RM, Heinzel FP, Fankhauser JE, Nelson CS, Sadick MD. Cutaneous host defense in leishmaniasis: interaction of isolated dermal macrophages and epidermal Langerhans cells with the insect-stage promastigote. Infect Immun. 1988;56:336-42.
-
(1988)
Infect Immun
, vol.56
, pp. 336-342
-
-
Locksley, R.M.1
Heinzel, F.P.2
Fankhauser, J.E.3
Nelson, C.S.4
Sadick, M.D.5
-
23
-
-
77950386333
-
Delineation of diverse macrophage activation programs in response to intracellular parasites and cytokines
-
Zhang S, Kim CC, Batra S, McKerrow JH, Loke P. Delineation of diverse macrophage activation programs in response to intracellular parasites and cytokines. PLoS Negl Trop Dis. 2010;4, e648.
-
(2010)
PLoS Negl Trop Dis
, vol.4
-
-
Zhang, S.1
Kim, C.C.2
Batra, S.3
McKerrow, J.H.4
Loke, P.5
-
24
-
-
79960392640
-
Leishmaniasis: complexity at the host-pathogen interface
-
Kaye P, Scott P. Leishmaniasis: complexity at the host-pathogen interface. Nat Rev Microbiol. 2011;9:604-15.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 604-615
-
-
Kaye, P.1
Scott, P.2
-
25
-
-
17444420714
-
Subversion mechanisms by which Leishmania parasites can escape the host immune response: a signaling point of view
-
Olivier M, Gregory DJ, Forget G. Subversion mechanisms by which Leishmania parasites can escape the host immune response: a signaling point of view. Clin Microbiol Rev. 2005;18:293-305.
-
(2005)
Clin Microbiol Rev
, vol.18
, pp. 293-305
-
-
Olivier, M.1
Gregory, D.J.2
Forget, G.3
-
26
-
-
0036853070
-
Evasion of innate immunity by parasitic protozoa
-
Sacks D, Sher A. Evasion of innate immunity by parasitic protozoa. Nat Immunol. 2002;3:1041-7.
-
(2002)
Nat Immunol
, vol.3
, pp. 1041-1047
-
-
Sacks, D.1
Sher, A.2
-
27
-
-
2342467942
-
Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major
-
Akopyants NS, Matlib RS, Bukanova EN, Smeds MR, Brownstein BH, Stormo GD, et al. Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major. Mol Biochem Parasitol. 2004;136:71-86.
-
(2004)
Mol Biochem Parasitol
, vol.136
, pp. 71-86
-
-
Akopyants, N.S.1
Matlib, R.S.2
Bukanova, E.N.3
Smeds, M.R.4
Brownstein, B.H.5
Stormo, G.D.6
-
28
-
-
2342544007
-
Expression profiling of the Leishmania life cycle: cDNA arrays identify developmentally regulated genes present but not annotated in the genome
-
Almeida R, Gilmartin BJ, McCann SH, Norrish A, Ivens AC, Lawson D, et al. Expression profiling of the Leishmania life cycle: cDNA arrays identify developmentally regulated genes present but not annotated in the genome. Mol Biochem Parasitol. 2004;136:87-100.
-
(2004)
Mol Biochem Parasitol
, vol.136
, pp. 87-100
-
-
Almeida, R.1
Gilmartin, B.J.2
McCann, S.H.3
Norrish, A.4
Ivens, A.C.5
Lawson, D.6
-
29
-
-
0035284822
-
General suppression of macrophage gene expression during Leishmania donovani infection
-
Buates S, Matlashewski G. General suppression of macrophage gene expression during Leishmania donovani infection. J Immunol. 2001;166:3416-22.
-
(2001)
J Immunol
, vol.166
, pp. 3416-3422
-
-
Buates, S.1
Matlashewski, G.2
-
30
-
-
0038342438
-
Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites
-
Chaussabel D, Semnani RT, McDowell MA, Sacks D, Sher A, Nutman TB. Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites. Blood. 2003;102:672-81.
-
(2003)
Blood
, vol.102
, pp. 672-681
-
-
Chaussabel, D.1
Semnani, R.T.2
McDowell, M.A.3
Sacks, D.4
Sher, A.5
Nutman, T.B.6
-
31
-
-
70449566764
-
Comparative expression profiling of Leishmania: modulation in gene expression between species and in different host genetic backgrounds
-
Depledge DP, Evans KJ, Ivens AC, Aziz N, Maroof A, Kaye PM, et al. Comparative expression profiling of Leishmania: modulation in gene expression between species and in different host genetic backgrounds. PLoS Negl Trop Dis. 2009;3, e476.
-
(2009)
PLoS Negl Trop Dis
, vol.3
-
-
Depledge, D.P.1
Evans, K.J.2
Ivens, A.C.3
Aziz, N.4
Maroof, A.5
Kaye, P.M.6
-
32
-
-
48949118074
-
Macrophage and T-cell gene expression in a model of early infection with the protozoan Leishmania chagasi
-
Ettinger NA, Wilson ME. Macrophage and T-cell gene expression in a model of early infection with the protozoan Leishmania chagasi. PLoS Negl Trop Dis. 2008;2, e252.
-
(2008)
PLoS Negl Trop Dis
, vol.2
-
-
Ettinger, N.A.1
Wilson, M.E.2
-
33
-
-
84872027050
-
Distinct transcriptional signatures of bone marrow-derived C57BL/6 and DBA/2 dendritic leucocytes hosting live Leishmania amazonensis amastigotes
-
Giraud E, Lecoeur H, Soubigou G, Coppée J-Y, Milon G, Prina E, et al. Distinct transcriptional signatures of bone marrow-derived C57BL/6 and DBA/2 dendritic leucocytes hosting live Leishmania amazonensis amastigotes. PLoS Negl Trop Dis. 2012;6, e1980.
-
(2012)
PLoS Negl Trop Dis
, vol.6
-
-
Giraud, E.1
Lecoeur, H.2
Soubigou, G.3
Coppée, J.-Y.4
Milon, G.5
Prina, E.6
-
34
-
-
40749112352
-
Comparison of the effects of Leishmania major or Leishmania donovani infection on macrophage gene expression
-
Gregory DJ, Sladek R, Olivier M, Matlashewski G. Comparison of the effects of Leishmania major or Leishmania donovani infection on macrophage gene expression. Infect Immun. 2008;76:1186-92.
-
(2008)
Infect Immun
, vol.76
, pp. 1186-1192
-
-
Gregory, D.J.1
Sladek, R.2
Olivier, M.3
Matlashewski, G.4
-
35
-
-
33644828887
-
Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana
-
Holzer TR, McMaster WR, Forney JD. Expression profiling by whole-genome interspecies microarray hybridization reveals differential gene expression in procyclic promastigotes, lesion-derived amastigotes, and axenic amastigotes in Leishmania mexicana. Mol Biochem Parasitol. 2006;146:198-218.
-
(2006)
Mol Biochem Parasitol
, vol.146
, pp. 198-218
-
-
Holzer, T.R.1
McMaster, W.R.2
Forney, J.D.3
-
36
-
-
79551644361
-
Multiple levels of gene regulation mediate differentiation of the intracellular pathogen Leishmania
-
Lahav T, Sivam D, Volpin H, Ronen M, Tsigankov P, Green A, et al. Multiple levels of gene regulation mediate differentiation of the intracellular pathogen Leishmania. FASEB J. 2011;25:515-25.
-
(2011)
FASEB J
, vol.25
, pp. 515-525
-
-
Lahav, T.1
Sivam, D.2
Volpin, H.3
Ronen, M.4
Tsigankov, P.5
Green, A.6
-
37
-
-
33846202033
-
Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: the Leishmania genome is constitutively expressed
-
Leifso K, Cohen-Freue G, Dogra N, Murray A, McMaster WR. Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: the Leishmania genome is constitutively expressed. Mol Biochem Parasitol. 2007;152:35-46.
-
(2007)
Mol Biochem Parasitol
, vol.152
, pp. 35-46
-
-
Leifso, K.1
Cohen-Freue, G.2
Dogra, N.3
Murray, A.4
McMaster, W.R.5
-
38
-
-
33745725868
-
A combined proteomic and transcriptomic approach to the study of stage differentiation in Leishmania infantum
-
McNicoll F, Drummelsmith J, Müller M, Madore E, Boilard N, Ouellette M, et al. A combined proteomic and transcriptomic approach to the study of stage differentiation in Leishmania infantum. Proteomics. 2006;6:3567-81.
-
(2006)
Proteomics
, vol.6
, pp. 3567-3581
-
-
McNicoll, F.1
Drummelsmith, J.2
Müller, M.3
Madore, E.4
Boilard, N.5
Ouellette, M.6
-
39
-
-
84925965949
-
Genomic profiling of human Leishmania braziliensis lesions identifies transcriptional modules associated with cutaneous immunopathology
-
Novais FO, Carvalho LP, Passos S, Roos DS, Carvalho EM, Scott P, et al. Genomic profiling of human Leishmania braziliensis lesions identifies transcriptional modules associated with cutaneous immunopathology. J Invest Dermatol. 2015;135:94-101.
-
(2015)
J Invest Dermatol
, vol.135
, pp. 94-101
-
-
Novais, F.O.1
Carvalho, L.P.2
Passos, S.3
Roos, D.S.4
Carvalho, E.M.5
Scott, P.6
-
40
-
-
64549137195
-
Transcriptional signatures of BALB/c mouse macrophages housing multiplying Leishmania amazonensis amastigotes
-
Osorio y Fortéa J, de La Llave E, Regnault B, Coppée J-Y, Milon G, Lang T, et al. Transcriptional signatures of BALB/c mouse macrophages housing multiplying Leishmania amazonensis amastigotes. BMC Genomics. 2009;10:119.
-
(2009)
BMC Genomics
, vol.10
, pp. 119
-
-
Osorio y Fortéa, J.1
Llave, E.2
Regnault, B.3
Coppée, J.-Y.4
Milon, G.5
Lang, T.6
-
41
-
-
84856777768
-
A comparison of two distinct murine macrophage gene expression profiles in response to Leishmania amazonensis infection
-
Probst CM, Silva RA, Menezes JPB, Almeida TF, Gomes IN, Dallabona AC, et al. A comparison of two distinct murine macrophage gene expression profiles in response to Leishmania amazonensis infection. BMC Microbiol. 2012;12:22.
-
(2012)
BMC Microbiol
, vol.12
, pp. 22
-
-
Probst, C.M.1
Silva, R.A.2
Menezes, J.P.B.3
Almeida, T.F.4
Gomes, I.N.5
Dallabona, A.C.6
-
42
-
-
84865975746
-
Transcriptomic signature of Leishmania infected mice macrophages: a metabolic point of view
-
Rabhi I, Rabhi S, Ben-Othman R, Rasche A, Daskalaki A, Trentin B, et al. Transcriptomic signature of Leishmania infected mice macrophages: a metabolic point of view. PLoS Negl Trop Dis. 2012;6, e1763.
-
(2012)
PLoS Negl Trop Dis
, vol.6
-
-
Rabhi, I.1
Rabhi, S.2
Ben-Othman, R.3
Rasche, A.4
Daskalaki, A.5
Trentin, B.6
-
43
-
-
84869022975
-
Human macrophage response to L. (Viannia) panamensis: microarray evidence for an early inflammatory response
-
Ramírez C, Díaz-Toro Y, Tellez J, Castilho TM, Rojas R, Ettinger NA, et al. Human macrophage response to L. (Viannia) panamensis: microarray evidence for an early inflammatory response. PLoS Negl Trop Dis. 2012;6, e1866.
-
(2012)
PLoS Negl Trop Dis
, vol.6
-
-
Ramírez, C.1
Díaz-Toro, Y.2
Tellez, J.3
Castilho, T.M.4
Rojas, R.5
Ettinger, N.A.6
-
44
-
-
47249134311
-
Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species
-
Rochette A, Raymond F, Ubeda J-M, Smith M, Messier N, Boisvert S, et al. Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species. BMC Genomics. 2008;9:255.
-
(2008)
BMC Genomics
, vol.9
, pp. 255
-
-
Rochette, A.1
Raymond, F.2
Ubeda, J.-M.3
Smith, M.4
Messier, N.5
Boisvert, S.6
-
45
-
-
60649102005
-
Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum
-
Rochette A, Raymond F, Corbeil J, Ouellette M, Papadopoulou B. Whole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum. Mol Biochem Parasitol. 2009;165:32-47.
-
(2009)
Mol Biochem Parasitol
, vol.165
, pp. 32-47
-
-
Rochette, A.1
Raymond, F.2
Corbeil, J.3
Ouellette, M.4
Papadopoulou, B.5
-
46
-
-
1842588609
-
Novel program of macrophage gene expression induced by phagocytosis of Leishmania chagasi
-
Rodriguez NE, Chang HK, Wilson ME. Novel program of macrophage gene expression induced by phagocytosis of Leishmania chagasi. Infect Immun. 2004;72:2111-22.
-
(2004)
Infect Immun
, vol.72
, pp. 2111-2122
-
-
Rodriguez, N.E.1
Chang, H.K.2
Wilson, M.E.3
-
47
-
-
33846259286
-
Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation
-
Saxena A, Lahav T, Holland N, Aggarwal G, Anupama A, Huang Y, et al. Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation. Mol Biochem Parasitol. 2007;152:53-65.
-
(2007)
Mol Biochem Parasitol
, vol.152
, pp. 53-65
-
-
Saxena, A.1
Lahav, T.2
Holland, N.3
Aggarwal, G.4
Anupama, A.5
Huang, Y.6
-
48
-
-
84866946835
-
Transcriptome patterns from primary cutaneous Leishmania braziliensis infections associate with eventual development of mucosal disease in humans
-
Maretti-Mira AC, Bittner J, Oliveira-Neto MP, Liu M, Kang D, Li H, et al. Transcriptome patterns from primary cutaneous Leishmania braziliensis infections associate with eventual development of mucosal disease in humans. PLoS Negl Trop Dis. 2012;6, e1816.
-
(2012)
PLoS Negl Trop Dis
, vol.6
-
-
Maretti-Mira, A.C.1
Bittner, J.2
Oliveira-Neto, M.P.3
Liu, M.4
Kang, D.5
Li, H.6
-
49
-
-
22244437571
-
The genome of the kinetoplastid parasite, Leishmania major
-
Ivens AC, Peacock CS, Worthey EA, Murphy L, Aggarwal G, Berriman M, et al. The genome of the kinetoplastid parasite, Leishmania major. Science. 2005;309:436-42.
-
(2005)
Science
, vol.309
, pp. 436-442
-
-
Ivens, A.C.1
Peacock, C.S.2
Worthey, E.A.3
Murphy, L.4
Aggarwal, G.5
Berriman, M.6
-
50
-
-
0038730932
-
Transcription of Leishmania major Friedlin Chromosome 1 Initiates in Both Directions within a Single Region
-
Martinez-Calvillo S, Yan S, Nguyen D, Fox M, Stuart K, Myler PJ. Transcription of Leishmania major Friedlin Chromosome 1 Initiates in Both Directions within a Single Region. Mol Cell. 2003;11:1291-9.
-
(2003)
Mol Cell
, vol.11
, pp. 1291-1299
-
-
Martinez-Calvillo, S.1
Yan, S.2
Nguyen, D.3
Fox, M.4
Stuart, K.5
Myler, P.J.6
-
51
-
-
0027193605
-
Coupling of poly (A) site selection and trans-splicing in Leishmania
-
LeBowitz JH, Smith HQ, Rusche L, Beverley SM. Coupling of poly (A) site selection and trans-splicing in Leishmania. Genes Dev. 1993;7:996-1007.
-
(1993)
Genes Dev.
, vol.7
, pp. 996-1007
-
-
LeBowitz, J.H.1
Smith, H.Q.2
Rusche, L.3
Beverley, S.M.4
-
52
-
-
0028214539
-
A common pyrimidine-rich motif governs trans-splicing and polyadenylation of tubulin polycistronic pre-mRNA in trypanosomes
-
Matthews KR, Tschudi C, Ullu E. A common pyrimidine-rich motif governs trans-splicing and polyadenylation of tubulin polycistronic pre-mRNA in trypanosomes. Genes Dev. 1994;8:491-501.
-
(1994)
Genes Dev
, vol.8
, pp. 491-501
-
-
Matthews, K.R.1
Tschudi, C.2
Ullu, E.3
-
53
-
-
0027498318
-
Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts
-
Ullu E, Matthews KR, Tschudi C. Temporal order of RNA-processing reactions in trypanosomes: rapid trans splicing precedes polyadenylation of newly synthesized tubulin transcripts. Mol Cell Biol. 1993;13:720-5.
-
(1993)
Mol Cell Biol
, vol.13
, pp. 720-725
-
-
Ullu, E.1
Matthews, K.R.2
Tschudi, C.3
-
54
-
-
35349012982
-
Post-transcriptional regulation of gene expression in trypanosomes and leishmanias
-
Clayton C, Shapira M. Post-transcriptional regulation of gene expression in trypanosomes and leishmanias. Mol Biochem Parasitol. 2007;156:93-101.
-
(2007)
Mol Biochem Parasitol
, vol.156
, pp. 93-101
-
-
Clayton, C.1
Shapira, M.2
-
55
-
-
84952018047
-
Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation
-
Dillon LAL, Okrah K, Hughitt VK, Suresh R, Li Y, Fernandes MC, et al. Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation. Nucleic Acids Res. 2015;43:6799-813.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. 6799-6813
-
-
Dillon, L.A.L.1
Okrah, K.2
Hughitt, V.K.3
Suresh, R.4
Li, Y.5
Fernandes, M.C.6
-
56
-
-
77956873627
-
Tackling the widespread and critical impact of batch effects in high-throughput data
-
Leek JT, Scharpf RB, Bravo HC, Simcha D, Langmead B, Johnson WE, et al. Tackling the widespread and critical impact of batch effects in high-throughput data. Nat Rev Genet. 2010;11:733-9.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 733-739
-
-
Leek, J.T.1
Scharpf, R.B.2
Bravo, H.C.3
Simcha, D.4
Langmead, B.5
Johnson, W.E.6
-
57
-
-
84890399789
-
Leishmania panamensis infection and antimonial drugs modulate expression of macrophage drug transporters and metabolizing enzymes: impact on intracellular parasite survival
-
Gómez MA, Navas A, Márquez R, Rojas LJ, Vargas DA, Blanco VM, et al. Leishmania panamensis infection and antimonial drugs modulate expression of macrophage drug transporters and metabolizing enzymes: impact on intracellular parasite survival. J Antimicrob Chemother. 2014;69:139-49.
-
(2014)
J Antimicrob Chemother
, vol.69
, pp. 139-149
-
-
Gómez, M.A.1
Navas, A.2
Márquez, R.3
Rojas, L.J.4
Vargas, D.A.5
Blanco, V.M.6
-
58
-
-
78651335912
-
ConsensusPathDB: toward a more complete picture of cell biology
-
Kamburov A, Pentchev K, Galicka H, Wierling C, Lehrach H, Herwig R. ConsensusPathDB: toward a more complete picture of cell biology. Nucleic Acids Res. 2011;39:D712-7.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D712-D717
-
-
Kamburov, A.1
Pentchev, K.2
Galicka, H.3
Wierling, C.4
Lehrach, H.5
Herwig, R.6
-
59
-
-
84940653770
-
The generation of macrophages with anti-inflammatory activity in the absence of STAT6 signaling
-
Fleming BD, Chandrasekaran P, Dillon LAL, Dalby E, Suresh R, Sarkar A, et al.. The generation of macrophages with anti-inflammatory activity in the absence of STAT6 signaling. J Leukoc Biol. 2015;98:395-407.
-
(2015)
J Leukoc Biol
, vol.98
, pp. 395-407
-
-
Fleming, B.D.1
Chandrasekaran, P.2
Dillon, L.A.L.3
Dalby, E.4
Suresh, R.5
Sarkar, A.6
-
60
-
-
84876285741
-
Succinate is an inflammatory signal that induces IL-1β through HIF-1aα
-
Tannahill GM, Curtis AM, Adamik J, Palsson-McDermott EM, McGettrick AF, Goel G, et al. Succinate is an inflammatory signal that induces IL-1β through HIF-1aα. Nature. 2013;496:238-42.
-
(2013)
Nature
, vol.496
, pp. 238-242
-
-
Tannahill, G.M.1
Curtis, A.M.2
Adamik, J.3
Palsson-McDermott, E.M.4
McGettrick, A.F.5
Goel, G.6
-
61
-
-
84938322895
-
Targeting of a Fixed Bacterial Immunogen to Fc Receptors Reverses the Anti-Inflammatory Properties of the Gram-Negative Bacterium, Francisella tularensis, during the Early Stages of Infection
-
Babadjanova Z, Wiedinger K, Gosselin EJ, Bitsaktsis C. Targeting of a Fixed Bacterial Immunogen to Fc Receptors Reverses the Anti-Inflammatory Properties of the Gram-Negative Bacterium, Francisella tularensis, during the Early Stages of Infection. PLoS One. 2015;10, e0129981.
-
(2015)
PLoS One
, vol.10
-
-
Babadjanova, Z.1
Wiedinger, K.2
Gosselin, E.J.3
Bitsaktsis, C.4
-
62
-
-
0024340791
-
CR1, the C3b receptor, mediates binding of infective Leishmania major metacyclic promastigotes to human macrophages
-
Da Silva RP, Hall BF, Joiner KA, Sacks DL. CR1, the C3b receptor, mediates binding of infective Leishmania major metacyclic promastigotes to human macrophages. J Immunol. 1989;143:617-22.
-
(1989)
J Immunol
, vol.143
, pp. 617-622
-
-
Silva, R.P.1
Hall, B.F.2
Joiner, K.A.3
Sacks, D.L.4
-
63
-
-
0028834877
-
Survival of immunoglobulin G-opsonized Toxoplasma gondii in nonadherent human monocytes
-
Fadul CE, Channon JY, Kasper LH. Survival of immunoglobulin G-opsonized Toxoplasma gondii in nonadherent human monocytes. Infect Immun. 1995;63:4290-4.
-
(1995)
Infect Immun
, vol.63
, pp. 4290-4294
-
-
Fadul, C.E.1
Channon, J.Y.2
Kasper, L.H.3
-
64
-
-
0023203676
-
The third component of complement (C3) is responsible for the intracellular survival of Leishmania major
-
Mosser DM, Edelson PJ. The third component of complement (C3) is responsible for the intracellular survival of Leishmania major. Nature. 1987;327:329-31.
-
(1987)
Nature
, vol.327
, pp. 329-331
-
-
Mosser, D.M.1
Edelson, P.J.2
-
65
-
-
31344442771
-
Uptake of Leishmania major by dendritic cells is mediated by Fcgamma receptors and facilitates acquisition of protective immunity
-
Woelbing F, Kostka SL, Moelle K, Belkaid Y, Sunderkoetter C, Verbeek S, et al. Uptake of Leishmania major by dendritic cells is mediated by Fcgamma receptors and facilitates acquisition of protective immunity. J Exp Med. 2006;203:177-88.
-
(2006)
J Exp Med
, vol.203
, pp. 177-188
-
-
Woelbing, F.1
Kostka, S.L.2
Moelle, K.3
Belkaid, Y.4
Sunderkoetter, C.5
Verbeek, S.6
-
66
-
-
23044494730
-
Genomic DNA macroarrays as a tool for analysis of gene expression in Leishmania
-
Quijada L, Soto M, Requena JM. Genomic DNA macroarrays as a tool for analysis of gene expression in Leishmania. Exp Parasitol. 2005;111:64-70.
-
(2005)
Exp Parasitol
, vol.111
, pp. 64-70
-
-
Quijada, L.1
Soto, M.2
Requena, J.M.3
-
67
-
-
33645847251
-
Identification of developmentally-regulated proteins in Leishmania panamensis by proteome profiling of promastigotes and axenic amastigotes
-
Walker J, Vasquez J-J, Gomez MA, Drummelsmith J, Burchmore R, Girard I, et al. Identification of developmentally-regulated proteins in Leishmania panamensis by proteome profiling of promastigotes and axenic amastigotes. Mol Biochem Parasitol. 2006;147:64-73.
-
(2006)
Mol Biochem Parasitol
, vol.147
, pp. 64-73
-
-
Walker, J.1
Vasquez, J.-J.2
Gomez, M.A.3
Drummelsmith, J.4
Burchmore, R.5
Girard, I.6
-
68
-
-
84904251225
-
No stress--Hsp90 and signal transduction in Leishmania
-
Hombach A, Clos J. No stress--Hsp90 and signal transduction in Leishmania. Parasitology. 2014;141:1156-66.
-
(2014)
Parasitology
, vol.141
, pp. 1156-1166
-
-
Hombach, A.1
Clos, J.2
-
69
-
-
84934343101
-
Molecular Chaperones of Leishmania: Central Players in Many Stress-Related and -Unrelated Physiological Processes
-
Requena JM, Montalvo AM, Fraga J. Molecular Chaperones of Leishmania: Central Players in Many Stress-Related and -Unrelated Physiological Processes. Biomed Res Int. 2015;2015:301326.
-
(2015)
Biomed Res Int
, vol.2015
, pp. 301326
-
-
Requena, J.M.1
Montalvo, A.M.2
Fraga, J.3
-
70
-
-
41049101045
-
Crucial role of cytosolic tryparedoxin peroxidase in Leishmania donovani survival, drug response and virulence
-
Iyer JP, Kaprakkaden A, Choudhary ML, Shaha C. Crucial role of cytosolic tryparedoxin peroxidase in Leishmania donovani survival, drug response and virulence. Mol Microbiol. 2008;68:372-91.
-
(2008)
Mol Microbiol
, vol.68
, pp. 372-391
-
-
Iyer, J.P.1
Kaprakkaden, A.2
Choudhary, M.L.3
Shaha, C.4
-
71
-
-
0037033042
-
A single-domain cyclophilin from Leishmania donovani reactivates soluble aggregates of adenosine kinase by isomerase-independent chaperone function
-
Chakraborty A, Das I, Datta R, Sen B, Bhattacharyya D, Mandal C, et al. A single-domain cyclophilin from Leishmania donovani reactivates soluble aggregates of adenosine kinase by isomerase-independent chaperone function. J Biol Chem. 2002;277:47451-60.
-
(2002)
J Biol Chem
, vol.277
, pp. 47451-47460
-
-
Chakraborty, A.1
Das, I.2
Datta, R.3
Sen, B.4
Bhattacharyya, D.5
Mandal, C.6
-
72
-
-
84870826735
-
Leishmania virulence factors: focus on the metalloprotease GP63
-
Olivier M, Atayde VD, Isnard A, Hassani K, Shio MT. Leishmania virulence factors: focus on the metalloprotease GP63. Microbes Infect. 2012;14:1377-89.
-
(2012)
Microbes Infect
, vol.14
, pp. 1377-1389
-
-
Olivier, M.1
Atayde, V.D.2
Isnard, A.3
Hassani, K.4
Shio, M.T.5
-
73
-
-
0038121032
-
Functional identification of galactosyltransferases (SCGs) required for species-specific modifications of the lipophosphoglycan adhesin controlling Leishmania major-sand fly interactions
-
Dobson DE, Scholtes LD, Valdez KE, Sullivan DR, Mengeling BJ, Cilmi S, et al. Functional identification of galactosyltransferases (SCGs) required for species-specific modifications of the lipophosphoglycan adhesin controlling Leishmania major-sand fly interactions. J Biol Chem. 2003;278:15523-31.
-
(2003)
J Biol Chem
, vol.278
, pp. 15523-15531
-
-
Dobson, D.E.1
Scholtes, L.D.2
Valdez, K.E.3
Sullivan, D.R.4
Mengeling, B.J.5
Cilmi, S.6
-
74
-
-
0029964584
-
Characterisation and expression of a stage-regulated gene of Leishmania major
-
Nourbakhsh F, Uliana SR, Smith DF. Characterisation and expression of a stage-regulated gene of Leishmania major. Mol Biochem Parasitol. 1996;76:201-13.
-
(1996)
Mol Biochem Parasitol
, vol.76
, pp. 201-213
-
-
Nourbakhsh, F.1
Uliana, S.R.2
Smith, D.F.3
-
75
-
-
81155138354
-
Evolutionary and functional insights into Leishmania META1: evidence for lateral gene transfer and a role for META1 in secretion
-
Puri V, Goyal A, Sankaranarayanan R, Enright AJ, Vaidya T. Evolutionary and functional insights into Leishmania META1: evidence for lateral gene transfer and a role for META1 in secretion. BMC Evol Biol. 2011;11:334.
-
(2011)
BMC Evol Biol
, vol.11
, pp. 334
-
-
Puri, V.1
Goyal, A.2
Sankaranarayanan, R.3
Enright, A.J.4
Vaidya, T.5
-
76
-
-
0036182624
-
Generation of myo-inositol-auxotrophic Leishmania mexicana mutants by targeted replacement of the myo-inositol-1-phosphate synthase gene
-
Ilg T. Generation of myo-inositol-auxotrophic Leishmania mexicana mutants by targeted replacement of the myo-inositol-1-phosphate synthase gene. Mol Biochem Parasitol. 2002;120:151-6.
-
(2002)
Mol Biochem Parasitol
, vol.120
, pp. 151-156
-
-
Ilg, T.1
-
77
-
-
0029093829
-
Functional expression of a myo-inositol/H+ symporter from Leishmania donovani
-
Drew ME, Langford CK, Klamo EM, Russell DG, Kavanaugh MP, Landfear SM. Functional expression of a myo-inositol/H+ symporter from Leishmania donovani. Mol Cell Biol. 1995;15:5508-15.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 5508-5515
-
-
Drew, M.E.1
Langford, C.K.2
Klamo, E.M.3
Russell, D.G.4
Kavanaugh, M.P.5
Landfear, S.M.6
-
78
-
-
33748462844
-
Inhibitors of casein kinase 1 block the growth of Leishmania major promastigotes in vitro
-
Allocco JJ, Donald R, Zhong T, Lee A, Tang YS, Hendrickson RC, et al. Inhibitors of casein kinase 1 block the growth of Leishmania major promastigotes in vitro. Int J Parasitol. 2006;36:1249-59.
-
(2006)
Int J Parasitol
, vol.36
, pp. 1249-1259
-
-
Allocco, J.J.1
Donald, R.2
Zhong, T.3
Lee, A.4
Tang, Y.S.5
Hendrickson, R.C.6
-
79
-
-
84896732966
-
Identification of a secreted casein kinase 1 in Leishmania donovani: effect of protein over expression on parasite growth and virulence
-
Dan-Goor M, Nasereddin A, Jaber H, Jaffe CL. Identification of a secreted casein kinase 1 in Leishmania donovani: effect of protein over expression on parasite growth and virulence. PLoS One. 2013;8, e79287.
-
(2013)
PLoS One
, vol.8
-
-
Dan-Goor, M.1
Nasereddin, A.2
Jaber, H.3
Jaffe, C.L.4
-
80
-
-
84911464465
-
Role of cAMP Signaling in the Survival and Infectivity of the Protozoan Parasite, Leishmania donovani
-
Biswas A, Bhattacharya A, Das PK. Role of cAMP Signaling in the Survival and Infectivity of the Protozoan Parasite, Leishmania donovani. Mol Biol Int. 2011;2011:782971.
-
(2011)
Mol Biol Int
, vol.2011
, pp. 782971
-
-
Biswas, A.1
Bhattacharya, A.2
Das, P.K.3
-
81
-
-
0029150739
-
A family of putative receptor-adenylate cyclases from Leishmania donovani
-
Sanchez MA, Zeoli D, Klamo EM, Kavanaugh MP, Landfear SM. A family of putative receptor-adenylate cyclases from Leishmania donovani. J Biol Chem. 1995;270:17551-8.
-
(1995)
J Biol Chem
, vol.270
, pp. 17551-17558
-
-
Sanchez, M.A.1
Zeoli, D.2
Klamo, E.M.3
Kavanaugh, M.P.4
Landfear, S.M.5
-
82
-
-
84884307143
-
Lipid synthesis in protozoan parasites: a comparison between kinetoplastids and apicomplexans
-
Ramakrishnan S, Serricchio M, Striepen B, Bütikofer P. Lipid synthesis in protozoan parasites: a comparison between kinetoplastids and apicomplexans. Prog Lipid Res. 2013;52:488-512.
-
(2013)
Prog Lipid Res
, vol.52
, pp. 488-512
-
-
Ramakrishnan, S.1
Serricchio, M.2
Striepen, B.3
Bütikofer, P.4
-
83
-
-
79961118829
-
Sphingolipid degradation by Leishmania major is required for its resistance to acidic pH in the mammalian host
-
Xu W, Xin L, Soong L, Zhang K. Sphingolipid degradation by Leishmania major is required for its resistance to acidic pH in the mammalian host. Infect Immun. 2011;79:3377-87.
-
(2011)
Infect Immun
, vol.79
, pp. 3377-3387
-
-
Xu, W.1
Xin, L.2
Soong, L.3
Zhang, K.4
-
84
-
-
84879511644
-
Calmodulin is required for paraflagellar rod assembly and flagellum-cell body attachment in trypanosomes
-
Ginger ML, Collingridge PW, Brown RWB, Sproat R, Shaw MK, Gull K. Calmodulin is required for paraflagellar rod assembly and flagellum-cell body attachment in trypanosomes. Protist. 2013;164:528-40.
-
(2013)
Protist
, vol.164
, pp. 528-540
-
-
Ginger, M.L.1
Collingridge, P.W.2
Brown, R.W.B.3
Sproat, R.4
Shaw, M.K.5
Gull, K.6
-
85
-
-
34247515617
-
A novel microtubule-depolymerizing kinesin involved in length control of a eukaryotic flagellum
-
Blaineau C, Tessier M, Dubessay P, Tasse L, Crobu L, Pagès M, et al. A novel microtubule-depolymerizing kinesin involved in length control of a eukaryotic flagellum. Curr Biol. 2007;17:778-82.
-
(2007)
Curr Biol
, vol.17
, pp. 778-782
-
-
Blaineau, C.1
Tessier, M.2
Dubessay, P.3
Tasse, L.4
Crobu, L.5
Pagès, M.6
-
86
-
-
84929284143
-
Mitosis, microtubule dynamics and the evolution of kinesins
-
Vicente JJ, Wordeman L. Mitosis, microtubule dynamics and the evolution of kinesins. Exp Cell Res. 2015;334:61-9.
-
(2015)
Exp Cell Res
, vol.334
, pp. 61-69
-
-
Vicente, J.J.1
Wordeman, L.2
-
87
-
-
77953658955
-
Regulation of cilia assembly, disassembly, and length by protein phosphorylation
-
Cao M, Li G, Pan J. Regulation of cilia assembly, disassembly, and length by protein phosphorylation. Methods Cell Biol. 2009;94:333-46.
-
(2009)
Methods Cell Biol
, vol.94
, pp. 333-346
-
-
Cao, M.1
Li, G.2
Pan, J.3
-
88
-
-
14844311219
-
LmxMPK9, a mitogen-activated protein kinase homologue affects flagellar length in Leishmania mexicana
-
Bengs F, Scholz A, Kuhn D, Wiese M. LmxMPK9, a mitogen-activated protein kinase homologue affects flagellar length in Leishmania mexicana. Mol Microbiol. 2005;55:1606-15.
-
(2005)
Mol Microbiol
, vol.55
, pp. 1606-1615
-
-
Bengs, F.1
Scholz, A.2
Kuhn, D.3
Wiese, M.4
-
89
-
-
33745262164
-
Interacting protein kinases involved in the regulation of flagellar length
-
Erdmann M, Scholz A, Melzer IM, Schmetz C, Wiese M. Interacting protein kinases involved in the regulation of flagellar length. Mol Biol Cell. 2006;17:2035-45.
-
(2006)
Mol Biol Cell
, vol.17
, pp. 2035-2045
-
-
Erdmann, M.1
Scholz, A.2
Melzer, I.M.3
Schmetz, C.4
Wiese, M.5
-
90
-
-
0042733004
-
Protein kinase involved in flagellar-length control
-
Wiese M, Kuhn D, Grünfelder CG. Protein kinase involved in flagellar-length control. Eukaryot Cell. 2003;2:769-77.
-
(2003)
Eukaryot Cell
, vol.2
, pp. 769-777
-
-
Wiese, M.1
Kuhn, D.2
Grünfelder, C.G.3
-
91
-
-
0030602234
-
Differential expression of Leishmania major beta-tubulin genes during the acquisition of promastigote infectivity
-
Coulson RM, Connor V, Chen JC, Ajioka JW. Differential expression of Leishmania major beta-tubulin genes during the acquisition of promastigote infectivity. Mol Biochem Parasitol. 1996;82:227-36.
-
(1996)
Mol Biochem Parasitol
, vol.82
, pp. 227-236
-
-
Coulson, R.M.1
Connor, V.2
Chen, J.C.3
Ajioka, J.W.4
-
92
-
-
0033727540
-
A new developmentally regulated gene family in Leishmania amastigotes encoding a homolog of amastin surface proteins
-
Wu Y, El Fakhry Y, Sereno D, Tamar S, Papadopoulou B. A new developmentally regulated gene family in Leishmania amastigotes encoding a homolog of amastin surface proteins. Mol Biochem Parasitol. 2000;110:345-57.
-
(2000)
Mol Biochem Parasitol
, vol.110
, pp. 345-357
-
-
Wu, Y.1
Fakhry, Y.2
Sereno, D.3
Tamar, S.4
Papadopoulou, B.5
-
93
-
-
0035669096
-
A lipophosphoglycan-independent method for isolation of infective Leishmania metacyclic promastigotes by density gradient centrifugation
-
Späth GF, Beverley SM. A lipophosphoglycan-independent method for isolation of infective Leishmania metacyclic promastigotes by density gradient centrifugation. Exp Parasitol. 2001;99:97-103.
-
(2001)
Exp Parasitol
, vol.99
, pp. 97-103
-
-
Späth, G.F.1
Beverley, S.M.2
-
94
-
-
84905049901
-
Trimmomatic: a flexible trimmer for Illumina sequence data
-
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30:2114-20.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
95
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009;25:1105-11.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
96
-
-
84928987900
-
HTSeq-a Python framework to work with high-throughput sequencing data
-
Anders S, Pyl PT, Huber W. HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics. 2014;31:166-9.
-
(2014)
Bioinformatics
, vol.31
, pp. 166-169
-
-
Anders, S.1
Pyl, P.T.2
Huber, W.3
-
97
-
-
84883364264
-
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
-
Anders S, McCarthy DJ, Chen Y, Okoniewski M, Smyth GK, Huber W, et al. Count-based differential expression analysis of RNA sequencing data using R and Bioconductor. Nat Protoc. 2013;8:1765-86.
-
(2013)
Nat Protoc
, vol.8
, pp. 1765-1786
-
-
Anders, S.1
McCarthy, D.J.2
Chen, Y.3
Okoniewski, M.4
Smyth, G.K.5
Huber, W.6
-
98
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 2003;19:185-93.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
99
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth GK. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol. 2004;3:Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
100
-
-
84896735766
-
voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
-
Law CW, Chen Y, Shi W, Smyth GK. voom: Precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol. 2014;15:R29.
-
(2014)
Genome Biol
, vol.15
, pp. R29
-
-
Law, C.W.1
Chen, Y.2
Shi, W.3
Smyth, G.K.4
|