-
1
-
-
84885358071
-
Phylogenetic diversity and functional gene patterns of sulfur-oxidizing subseafloor Epsilonproteobacteria in diffuse hydrothermal vent fluids
-
Akerman, N.H., Butterfield, D.A., and Huber, J.A. (2013). Phylogenetic diversity and functional gene patterns of sulfur-oxidizing subseafloor Epsilonproteobacteria in diffuse hydrothermal vent fluids. Front. Microbiol. 4:185. doi: 10.3389/fmicb.2013.00185.
-
(2013)
Front. Microbiol.
, vol.4
, pp. 185
-
-
Akerman, N.H.1
Butterfield, D.A.2
Huber, J.A.3
-
2
-
-
0036022478
-
Caminibacter hydrogeniphilus gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vent
-
Alain, K., Querellou, J., Lesongeur, F., Pignet, P., Crassous, P., Raguenes, G., et al. (2002). Caminibacter hydrogeniphilus gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing bacterium isolated from an East Pacific Rise hydrothermal vent. Int. J. Syst. Evol. Microbiol. 52, 1317-1323. doi: 10.1099/ijs.0.02142-0.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1317-1323
-
-
Alain, K.1
Querellou, J.2
Lesongeur, F.3
Pignet, P.4
Crassous, P.5
Raguenes, G.6
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410. doi: 10.1016/S0022-2836(05)80360-2.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
40549120596
-
The RAST Server: rapid annotations using subsystems technology
-
Aziz, R.K., Bartels, D., Best, A.A., DeJongh, M., Disz, T., Edwards, R.A., et al. (2008). The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75. doi: 10.1186/1471-2164-9-75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
-
5
-
-
23744456114
-
A structural study towards the understanding of the interactions of SoxY. SoxZ, and SoxB, leading to the oxidation of sulfur anions via the novel global sulfur oxidizing (sox) operon
-
Bagchi, A., and Ghosh, T.C. (2005). A structural study towards the understanding of the interactions of SoxY. SoxZ, and SoxB, leading to the oxidation of sulfur anions via the novel global sulfur oxidizing (sox) operon. Biochem. Biophys. Res. Commun. 335, 609-615.
-
(2005)
Biochem. Biophys. Res. Commun.
, vol.335
, pp. 609-615
-
-
Bagchi, A.1
Ghosh, T.C.2
-
6
-
-
41349097112
-
Hydrogen and nickel metabolism in Helicobacter species
-
Benoit, S.L., and Maier, R.J. (2008). Hydrogen and nickel metabolism in Helicobacter species. Ann. N. Y. Acad. Sci. 1125, 242-251. doi: 10.1196/annals.1419.014.
-
(2008)
Ann. N. Y. Acad. Sci.
, vol.1125
, pp. 242-251
-
-
Benoit, S.L.1
Maier, R.J.2
-
7
-
-
0025169910
-
Desulfurella acetivorans gen. nov. and sp. nov -a new thermophilic sulfur-reducing Eubacterium
-
Bonch-Osmolovskaya, E.A., Sokolova, T.G., Kostrikina, N.A., and Zavarzin, G.A. (1990). Desulfurella acetivorans gen. nov. and sp. nov. -a new thermophilic sulfur-reducing Eubacterium. Arch. Microbiol. 153, 151-155. doi: 10.1007/BF00247813.
-
(1990)
Arch. Microbiol.
, vol.153
, pp. 151-155
-
-
Bonch-Osmolovskaya, E.A.1
Sokolova, T.G.2
Kostrikina, N.A.3
Zavarzin, G.A.4
-
8
-
-
0032951952
-
Thiomicrospira kuenenii sp. nov. and Thiomicrospira frisia sp. nov., two mesophilic obligately chemolithoautotrophic sulfur-oxidizing bacteria isolated from an intertidal mud flat
-
Brinkhoff, T., Muyzer, G., Wirsen, C.O., and Kuever, J. (1999). Thiomicrospira kuenenii sp. nov. and Thiomicrospira frisia sp. nov., two mesophilic obligately chemolithoautotrophic sulfur-oxidizing bacteria isolated from an intertidal mud flat. Int. J. Syst. Bacteriol. 2, 385-392. doi: 10.1099/00207713-49-2-385.
-
(1999)
Int. J. Syst. Bacteriol.
, vol.2
, pp. 385-392
-
-
Brinkhoff, T.1
Muyzer, G.2
Wirsen, C.O.3
Kuever, J.4
-
9
-
-
33744503148
-
[NiFe]-hydrogenases of Ralstonia eutropha H16: modular enzymes for oxygen-tolerant biological hydrogen oxidation
-
Burgdorf, T., Lenz, O., Buhrke, T., van der Linden, E., Jones, A.K., Albracht, S.P. J., et al. (2005). [NiFe]-hydrogenases of Ralstonia eutropha H16: modular enzymes for oxygen-tolerant biological hydrogen oxidation. J. Mol. Microbiol. Biotechnol. 10, 181-196. doi: 10.1159/000091564.
-
(2005)
J. Mol. Microbiol. Biotechnol.
, vol.10
, pp. 181-196
-
-
Burgdorf, T.1
Lenz, O.2
Buhrke, T.3
van der Linden, E.4
Jones, A.K.5
Albracht, S.P.J.6
-
10
-
-
84954161191
-
Non-contiguous finished genome sequence and description of Sulfurimonas hongkongensis sp. nov., a strictly anaerobic denitrifying, hydrogen-and sulfur-oxidizing chemolithoautotroph isolated from marine sediment
-
Cai, L., Shao, M.-F., and Zhang, T. (2014). Non-contiguous finished genome sequence and description of Sulfurimonas hongkongensis sp. nov., a strictly anaerobic denitrifying, hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from marine sediment. Stand Genomic Sci. 9, 1302-1310. doi: 10.4056/sigs.4948668.
-
(2014)
Stand Genomic Sci
, vol.9
, pp. 1302-1310
-
-
Cai, L.1
Shao, M.-F.2
Zhang, T.3
-
11
-
-
33646827488
-
The versatile Epsilonproteobacteria: key players in sulphidic habitats
-
Campbell, B.J., Engel, A.S., Porter, M.L., and Takai, K. (2006). The versatile Epsilonproteobacteria: key players in sulphidic habitats. Nat. Rev. Microbiol. 4, 458-468. doi: 10.1038/nrmicro1414.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 458-468
-
-
Campbell, B.J.1
Engel, A.S.2
Porter, M.L.3
Takai, K.4
-
12
-
-
61449257456
-
Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola
-
Campbell, B.J., Smith, J.L., Hanson, T.E., Klotz, M.G., Stein, L.Y., Lee, C.K., et al. (2009). Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola. PLoS Genet. 5:e1000362. doi: 10.1371/journal.pgen.1000362.
-
(2009)
PLoS Genet
, vol.5
-
-
Campbell, B.J.1
Smith, J.L.2
Hanson, T.E.3
Klotz, M.G.4
Stein, L.Y.5
Lee, C.K.6
-
13
-
-
84879586425
-
Physiological and genetic description of dissimilatory perchlorate reduction by the novel marine bacterium Arcobacter sp. strain CAB
-
Carlström, C.I., Wang, O., Melnyk, R.A., Bauer, S., Lee, J., Engelbrektson, A., et al. (2013). Physiological and genetic description of dissimilatory perchlorate reduction by the novel marine bacterium Arcobacter sp. strain CAB. mBio 4:e217-13. doi: 10.1128/mBio.00217-13.
-
(2013)
mBio
, vol.4
, pp. e217-e313
-
-
Carlström, C.I.1
Wang, O.2
Melnyk, R.A.3
Bauer, S.4
Lee, J.5
Engelbrektson, A.6
-
14
-
-
84880798154
-
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
-
Chin, C.S., Alexander, D.H., Marks, P., Klammer, A.A., Drake, J., Heiner, C., et al. (2013). Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10, 563-569. doi: 10.1038/nmeth.2474.
-
(2013)
Nat. Methods.
, vol.10
, pp. 563-569
-
-
Chin, C.S.1
Alexander, D.H.2
Marks, P.3
Klammer, A.A.4
Drake, J.5
Heiner, C.6
-
15
-
-
65349182240
-
Arcobacter mytili sp. nov., an indoxyl acetate-hydrolysis-negative bacterium isolated from mussels
-
Collado, L., Cleenwerck, I., Van Trappen, S., De Vos, P., and Figueras, M.J. (2009). Arcobacter mytili sp. nov., an indoxyl acetate-hydrolysis-negative bacterium isolated from mussels. Int. J. Syst. Evol. Microbiol. 59, 1391-1396. doi: 10.1099/ijs.0.003749-0.
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 1391-1396
-
-
Collado, L.1
Cleenwerck, I.2
Van Trappen, S.3
De Vos, P.4
Figueras, M.J.5
-
16
-
-
78751500163
-
Arcobacter defluvii sp. nov., isolated from sewage samples
-
Collado, L., Levican, A., Perez, J., and Figueras, M.J. (2011). Arcobacter defluvii sp. nov., isolated from sewage samples. Int. J. Syst. Evol. Microbiol. 61, 2155-2161. doi: 10.1099/ijs.0.025668-0.
-
(2011)
Int. J. Syst. Evol. Microbiol.
, vol.61
, pp. 2155-2161
-
-
Collado, L.1
Levican, A.2
Perez, J.3
Figueras, M.J.4
-
17
-
-
17644385506
-
The hydrogenases of Geobacter sulfurreducens: a comparative genomic perspective
-
Coppi, M.V. (2005). The hydrogenases of Geobacter sulfurreducens: a comparative genomic perspective. Microbiology 151, 1239-1254. doi: 10.1099/mic.0.27535-0.
-
(2005)
Microbiology
, vol.151
, pp. 1239-1254
-
-
Coppi, M.V.1
-
18
-
-
38149142479
-
Identification of membrane-associated proteins from Campylobacter jejuni strains using complementary proteomics technologies
-
Cordwell, S.J., Len, A.C. L., Touma, R.G., Scott, N.E., Falconer, L., Jones, D., et al. (2008). Identification of membrane-associated proteins from Campylobacter jejuni strains using complementary proteomics technologies. Proteomics 8, 122-139. doi: 10.1002/pmic.200700561.
-
(2008)
Proteomics
, vol.8
, pp. 122-139
-
-
Cordwell, S.J.1
Len, A.C.L.2
Touma, R.G.3
Scott, N.E.4
Falconer, L.5
Jones, D.6
-
19
-
-
84874946313
-
Sulfur oxidation in prokaryotes
-
(Chichester: John Wiley & Sons, Ltd.)
-
Dahl, C., Friedrich, C., and Kletzin, A. (2008). "Sulfur oxidation in prokaryotes," in Encyclopedia of Life Sciences (ELS) (Chichester: John Wiley & Sons, Ltd.).
-
(2008)
Encyclopedia of Life Sciences (ELS)
-
-
Dahl, C.1
Friedrich, C.2
Kletzin, A.3
-
20
-
-
84874722999
-
The versatile in situ gene expression of an Epsilonproteobacteria-dominated biofilm from a hydrothermal chimney
-
Dahle, H., Roalkvam, I., Thorseth, I.H., Pedersen, R.B., and Steen, I.H. (2013). The versatile in situ gene expression of an Epsilonproteobacteria-dominated biofilm from a hydrothermal chimney. Environ. Microbiol. Rep. 5, 282-290. doi: 10.1111/1758-2229.12016.
-
(2013)
Environ. Microbiol. Rep.
, vol.5
, pp. 282-290
-
-
Dahle, H.1
Roalkvam, I.2
Thorseth, I.H.3
Pedersen, R.B.4
Steen, I.H.5
-
21
-
-
0014713693
-
The quantitative measurement of DNA hybridization from renaturation rates
-
De Ley, J., Cattoir, H., and Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur. J. Biochem. 12, 133-142.
-
(1970)
Eur. J. Biochem.
, vol.12
, pp. 133-142
-
-
De Ley, J.1
Cattoir, H.2
Reynaerts, A.3
-
22
-
-
19544375446
-
Arcobacter halophilus sp. nov., the first obligate halophile in the genus Arcobacter
-
Donachie, S.P., Bowman, J.P., On, S.L., and Alam, M. (2005). Arcobacter halophilus sp. nov., the first obligate halophile in the genus Arcobacter. Int. J. Syst. Evol. Microbiol. 55, 1271-1277. doi: 10.1099/ijs.0.63581-0.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 1271-1277
-
-
Donachie, S.P.1
Bowman, J.P.2
On, S.L.3
Alam, M.4
-
23
-
-
84905638576
-
Modeling of heavy nitrate corrosion in anaerobe aquifer injection water biofilm: a case study in a flow rig
-
Drønen, K., Roalkvam, I., Beeder, J., Torsvik, T., Steen, I.H., Skauge, A., et al. (2014). Modeling of heavy nitrate corrosion in anaerobe aquifer injection water biofilm: a case study in a flow rig. Environ. Sci. Technol. 48, 8627-8635. doi: 10.1021/es500839u.
-
(2014)
Environ. Sci. Technol.
, vol.48
, pp. 8627-8635
-
-
Drønen, K.1
Roalkvam, I.2
Beeder, J.3
Torsvik, T.4
Steen, I.H.5
Skauge, A.6
-
24
-
-
0026503258
-
The quinone-reactive Ni/Fe-hydrogenase of Wolinella succinogenes
-
Dross, F., Geisler, V., Lenger, R., Theis, F., Krafft, T., Fahrenholz, F., et al. (1992). The quinone-reactive Ni/Fe-hydrogenase of Wolinella succinogenes. Eur. J. Biochem. 206, 93-102. doi: 10.1111/j.1432-1033.1992.tb16905.x.
-
(1992)
Eur. J. Biochem.
, vol.206
, pp. 93-102
-
-
Dross, F.1
Geisler, V.2
Lenger, R.3
Theis, F.4
Krafft, T.5
Fahrenholz, F.6
-
25
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes Characterization of a gene coding for 16S ribosomal RNA
-
Edwards, U., Rogall, T., Blocker, H., Emde, M., and Bottger, E.C. (1989). Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 17, 7843-7853.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blocker, H.3
Emde, M.4
Bottger, E.C.5
-
26
-
-
0017780632
-
Isolation of Spirillum/Vibrio-like organisms from bovine fetuses
-
Ellis, W.A., Neill, S.D., O'Brien, J.J., Ferguson, H.W., and Hanna, J. (1977). Isolation of Spirillum/Vibrio-like organisms from bovine fetuses. Vet. Rec. 100, 451-452. doi: 10.1136/vr.100.21.451.
-
(1977)
Vet. Rec.
, vol.100
, pp. 451-452
-
-
Ellis, W.A.1
Neill, S.D.2
O'Brien, J.J.3
Ferguson, H.W.4
Hanna, J.5
-
27
-
-
79952532691
-
Arcobacter molluscorum sp. nov., a new species isolated from shellfish
-
Figueras, M.J., Collado, L., Levican, A., Perez, J., Solsona, M.J., and Yustes, C. (2011a). Arcobacter molluscorum sp. nov., a new species isolated from shellfish. Syst. Appl. Microbiol. 34, 105-109. doi: 10.1016/j.syapm.2010.10.001.
-
(2011)
Syst. Appl. Microbiol.
, vol.34
, pp. 105-109
-
-
Figueras, M.J.1
Collado, L.2
Levican, A.3
Perez, J.4
Solsona, M.J.5
Yustes, C.6
-
28
-
-
80051697959
-
Arcobacter ellisii sp. nov., isolated from mussels
-
Figueras, M.J., Levican, A., Collado, L., Inza, M.I., and Yustes, C. (2011b). Arcobacter ellisii sp. nov., isolated from mussels. Syst. Appl. Microbiol. 34, 414-418. doi: 10.1016/j.syapm.2011.04.004.
-
(2011)
Syst. Appl. Microbiol.
, vol.34
, pp. 414-418
-
-
Figueras, M.J.1
Levican, A.2
Collado, L.3
Inza, M.I.4
Yustes, C.5
-
29
-
-
84891782659
-
Pfam: the protein families database
-
Finn, R.D., Bateman, A., Clements, J., Coggill, P., Eberhardt, R.Y., Eddy, S.R., et al. (2014). Pfam: the protein families database. Nucleic Acids Res. 42, D222-D230. doi: 10.1093/nar/gkt1223.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D222-D230
-
-
Finn, R.D.1
Bateman, A.2
Clements, J.3
Coggill, P.4
Eberhardt, R.Y.5
Eddy, S.R.6
-
30
-
-
0030853122
-
Sulfurospirillum arcachonense sp. nov., a new microaerophilic sulfur-reducing bacterium
-
Finster, K., Liesack, W., and Tindall, B.J. (1997). Sulfurospirillum arcachonense sp. nov., a new microaerophilic sulfur-reducing bacterium. Int. J. Syst. Bacteriol. 47, 1212-1217. doi: 10.1099/00207713-47-4-1212.
-
(1997)
Int. J. Syst. Bacteriol.
, vol.47
, pp. 1212-1217
-
-
Finster, K.1
Liesack, W.2
Tindall, B.J.3
-
31
-
-
0035408581
-
Oxidation of reduced inorganic sulfur compounds by bacteria: emergence of a common mechanism?
-
Friedrich, C.G., Rother, D., Bardischewsky, F., Quentmeier, A., and Fischer, J. (2001). Oxidation of reduced inorganic sulfur compounds by bacteria: emergence of a common mechanism? Appl. Environ. Microbiol. 67, 2873-2882. doi: 10.1128/AEM.67.7.2873-2882.2001.
-
(2001)
Appl Environ. Microbiol.
, vol.67
, pp. 2873-2882
-
-
Friedrich, C.G.1
Rother, D.2
Bardischewsky, F.3
Quentmeier, A.4
Fischer, J.5
-
32
-
-
0034041256
-
Isolation and characterization of strains CVO and FWKO B, two novel nitrate-reducing, sulfide-oxidizing bacteria isolated from oil field brine
-
Gevertz, D., Telang, A.J., Voordouw, G., and Jenneman, G.E. (2000). Isolation and characterization of strains CVO and FWKO B, two novel nitrate-reducing, sulfide-oxidizing bacteria isolated from oil field brine. Appl. Environ. Microbiol. 66, 2491-2501. doi: 10.1128/AEM.66.6.2491-2501.2000.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2491-2501
-
-
Gevertz, D.1
Telang, A.J.2
Voordouw, G.3
Jenneman, G.E.4
-
33
-
-
84928986110
-
Cetia pacifica gen. nov., sp. nov., a chemolithoautotrophic, thermophilic, nitrate-ammonifying bacterium from a deep-sea hydrothermal vent
-
Grosche, A., Sekaran, H., Pérez-Rodríguez, I., Starovoytov, V., and Vetriani, C. (2015). Cetia pacifica gen. nov., sp. nov., a chemolithoautotrophic, thermophilic, nitrate-ammonifying bacterium from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 65, 1144-1150. doi: 10.1099/ijs.0.000070.
-
(2015)
Int. J. Syst. Evol. Microbiol.
, vol.65
, pp. 1144-1150
-
-
Grosche, A.1
Sekaran, H.2
Pérez-Rodríguez, I.3
Starovoytov, V.4
Vetriani, C.5
-
34
-
-
84856009886
-
Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones
-
Grote, J., Schott, T., Bruckner, C.G., Glöckner, F.O., Jost, G., Teeling, H., et al. (2012). Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones. Proc. Natl. Acad. Sci. U.S.A. 109, 506-510. doi: 10.1073/pnas.1111262109.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 506-510
-
-
Grote, J.1
Schott, T.2
Bruckner, C.G.3
Glöckner, F.O.4
Jost, G.5
Teeling, H.6
-
35
-
-
1842327489
-
Genes encoding the NAD-reducing hydrogenase of Rhodococcus opacus MR11
-
Grzeszik, C., Lübbers, M., Reh, M., and Schlegel, H.G. (1997). Genes encoding the NAD-reducing hydrogenase of Rhodococcus opacus MR11. Microbiology 143, 1271-1286. doi: 10.1099/00221287-143-4-1271.
-
(1997)
Microbiology
, vol.143
, pp. 1271-1286
-
-
Grzeszik, C.1
Lübbers, M.2
Reh, M.3
Schlegel, H.G.4
-
36
-
-
84908698135
-
Biogeographic congruency among bacterial communities from terrestrial sulfidic springs
-
Headd, B., and Engel, A.S. (2014). Biogeographic congruency among bacterial communities from terrestrial sulfidic springs. Front. Microbiol. 5:473. doi: 10.3389/fmicb.2014.00473.
-
(2014)
Front. Microbiol.
, vol.5
, pp. 473
-
-
Headd, B.1
Engel, A.S.2
-
37
-
-
84857915091
-
NAD(H)-coupled hydrogen cycling -structure-function relationships of bidirectional [NiFe] hydrogenases
-
Horch, M., Lauterbach, L., Lenz, O., Hildebrandt, P., and Zebger, I. (2012). NAD(H)-coupled hydrogen cycling - structure-function relationships of bidirectional [NiFe] hydrogenases. FEBS Lett. 586, 545-556. doi: 10.1016/j.febslet.2011.10.010.
-
(2012)
FEBS Lett
, vol.586
, pp. 545-556
-
-
Horch, M.1
Lauterbach, L.2
Lenz, O.3
Hildebrandt, P.4
Zebger, I.5
-
38
-
-
65349102797
-
Arcobacter thereius sp. nov., isolated from pigs and ducks
-
Houf, K., On, S.L., Coenye, T., Debruyne, L., De Smet, S., and Vandamme, P. (2009). Arcobacter thereius sp. nov., isolated from pigs and ducks. Int. J. Syst. Evol. Microbiol. 59, 2599-2604. doi: 10.1099/ijs.0.006650-0.
-
(2009)
Int. J. Syst. Evol. Microbiol.
, vol.59
, pp. 2599-2604
-
-
Houf, K.1
On, S.L.2
Coenye, T.3
Debruyne, L.4
De Smet, S.5
Vandamme, P.6
-
39
-
-
16844384716
-
Arcobacter cibarius sp. nov., isolated from broiler carcasses
-
Houf, K., On, S.L., Coenye, T., Mast, J., Van Hoof, J., and Vandamme, P. (2005). Arcobacter cibarius sp. nov., isolated from broiler carcasses. Int. J. Syst. Evol. Microbiol. 55, 713-717. doi: 10.1099/ijs.0.63103-0.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 713-717
-
-
Houf, K.1
On, S.L.2
Coenye, T.3
Mast, J.4
Van Hoof, J.5
Vandamme, P.6
-
40
-
-
77955237112
-
Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts
-
Huber, J.A., Cantin, H.V., Huse, S.M., Welch, D.B., Sogin, M.L., and Butterfield, D.A. (2010). Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts. FEMS Microbiol. Ecol. 73, 538-549. doi: 10.1111/j.1574-6941.2010.00910.x.
-
(2010)
FEMS Microbiol. Ecol.
, vol.73
, pp. 538-549
-
-
Huber, J.A.1
Cantin, H.V.2
Huse, S.M.3
Welch, D.B.4
Sogin, M.L.5
Butterfield, D.A.6
-
41
-
-
0020549589
-
Studies on the spectrophotometric determination of DNA hybridization from renaturation rates
-
Huss, V.A., Festl, H., and Schleifer, K.H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst. Appl. Microbiol. 4, 184-192. doi: 10.1016/S0723-2020(83)80048-4.
-
(1983)
Syst. Appl. Microbiol.
, vol.4
, pp. 184-192
-
-
Huss, V.A.1
Festl, H.2
Schleifer, K.H.3
-
42
-
-
0345328152
-
Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing Epsilonproteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough
-
Inagaki, F., Takai, K., Kobayashi, H., Nealson, K.H., and Horikoshi, K. (2003). Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing Epsilonproteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int. J. Syst. Evol. Microbiol. 53, 1801-1805. doi: 10.1099/ijs.0.02682-0.
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 1801-1805
-
-
Inagaki, F.1
Takai, K.2
Kobayashi, H.3
Nealson, K.H.4
Horikoshi, K.5
-
43
-
-
5444247841
-
Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from Okinawa Trough hydrothermal sediments
-
Inagaki, F., Takai, K., Nealson, K.H., and Horikoshi, K. (2004). Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from Okinawa Trough hydrothermal sediments. Int. J. Syst. Evol. Microbiol. 54, 1477-1482. doi: 10.1099/ijs.0.03042-0.
-
(2004)
Int. J. Syst. Evol. Microbiol.
, vol.54
, pp. 1477-1482
-
-
Inagaki, F.1
Takai, K.2
Nealson, K.H.3
Horikoshi, K.4
-
44
-
-
84871773633
-
Genomic analysis of Melioribacter roseus, facultatively anaerobic organotrophic bacterium representing a novel deep lineage within Bacteriodetes/Chlorobi group
-
Kadnikov, V.V., Mardanov, A.V., Podosokorskaya, O.A., Gavrilov, S.N., Kublanov, I.V., Beletsky, A.V., et al. (2013). Genomic analysis of Melioribacter roseus, facultatively anaerobic organotrophic bacterium representing a novel deep lineage within Bacteriodetes/Chlorobi group. PLoS ONE 8:e53047. doi: 10.1371/journal.pone.0053047.
-
(2013)
PLoS ONE
, vol.8
, pp. e53047
-
-
Kadnikov, V.V.1
Mardanov, A.V.2
Podosokorskaya, O.A.3
Gavrilov, S.N.4
Kublanov, I.V.5
Beletsky, A.V.6
-
45
-
-
66349117533
-
Electron transport chains and bioenergetics of respiratory nitrogen metabolism in Wolinella succinogenes and other Epsilonproteobacteria
-
Kern, M., and Simon, J. (2009). Electron transport chains and bioenergetics of respiratory nitrogen metabolism in Wolinella succinogenes and other Epsilonproteobacteria. Biochim. Biophys. Acta 1787, 646-656. doi: 10.1016/j.bbabio.2008.12.010.
-
(2009)
Biochim. Biophys. Acta.
, vol.1787
, pp. 646-656
-
-
Kern, M.1
Simon, J.2
-
46
-
-
0025967986
-
Campylobacter butzleri sp. nov. isolated from humans and animals with diarrheal illness
-
Kiehlbauch, J.A., Brenner, D.J., Nicholson, M.A., Baker, C.N., Patton, C.M., Steigerwalt, A.G., et al. (1991). Campylobacter butzleri sp. nov. isolated from humans and animals with diarrheal illness. J. Clin. Microbiol. 29, 376-385.
-
(1991)
J. Clin. Microbiol.
, vol.29
, pp. 376-385
-
-
Kiehlbauch, J.A.1
Brenner, D.J.2
Nicholson, M.A.3
Baker, C.N.4
Patton, C.M.5
Steigerwalt, A.G.6
-
47
-
-
77949422380
-
Arcobacter marinus sp. nov
-
Kim, H.M., Hwang, C.Y., and Cho, B.C. (2010). Arcobacter marinus sp. nov. Int. J. Syst. Evol. Microbiol. 60, 531-536. doi: 10.1099/ijs.0.007740-0.
-
(2010)
Int. J. Syst. Evol. Microbiol.
, vol.60
, pp. 531-536
-
-
Kim, H.M.1
Hwang, C.Y.2
Cho, B.C.3
-
48
-
-
0021272743
-
Terminal oxidases of Escherichia coli aerobic respiratory chain II. Purification and properties of cytochrome b558-d complex from cells grown with limited oxygen and evidence of branched electron-carrying systems
-
Kita, K., Konishi, K., and Anraku, Y. (1984). Terminal oxidases of Escherichia coli aerobic respiratory chain. II. Purification and properties of cytochrome b558-d complex from cells grown with limited oxygen and evidence of branched electron-carrying systems. J. Biol. Chem. 259, 3375-3381.
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 3375-3381
-
-
Kita, K.1
Konishi, K.2
Anraku, Y.3
-
49
-
-
16844370982
-
Thiomicrospira arctica sp. nov. and Thiomicrospira psychrophila sp. nov., psychrophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacteria isolated from marine Arctic sediments
-
Knittel, K., Kuever, J., Meyerdierks, A., Meinke, R., Amann, R., and Brinkhoff, T. (2005). Thiomicrospira arctica sp. nov. and Thiomicrospira psychrophila sp. nov., psychrophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacteria isolated from marine Arctic sediments. Int. J. Syst. Evol. Microbiol. 55, 781-786. doi: 10.1099/ijs.0.63362-0.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 781-786
-
-
Knittel, K.1
Kuever, J.2
Meyerdierks, A.3
Meinke, R.4
Amann, R.5
Brinkhoff, T.6
-
50
-
-
34248206215
-
Sulfurospirillum cavolei sp. nov., a facultatively anaerobic sulfur-reducing bacterium isolated from an underground crude oil storage cavity
-
Kodama, Y., Ha, L.T., and Watanabe, K. (2007). Sulfurospirillum cavolei sp. nov., a facultatively anaerobic sulfur-reducing bacterium isolated from an underground crude oil storage cavity. Int. J. Syst. Evol. Microbiol. 57, 827-831. doi: 10.1099/ijs.0.64823-0.
-
(2007)
Int. J. Syst. Evol. Microbiol.
, vol.57
, pp. 827-831
-
-
Kodama, Y.1
Ha, L.T.2
Watanabe, K.3
-
51
-
-
9744249395
-
Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity
-
Kodama, Y., and Watanabe, K. (2004). Sulfuricurvum kujiense gen. nov., sp. nov., a facultatively anaerobic, chemolithoautotrophic, sulfur-oxidizing bacterium isolated from an underground crude-oil storage cavity. Int. J. Syst. Evol. Microbiol. 54, 2297-2300. doi: 10.1099/ijs.0.63243-0.
-
(2004)
Int. J. Syst. Evol. Microbiol.
, vol.54
, pp. 2297-2300
-
-
Kodama, Y.1
Watanabe, K.2
-
52
-
-
84887118887
-
Sulfurimonas gotlandica sp. nov., a chemoautotrophic and psychrotolerant epsilonproteobacterium isolated from a pelagic redoxcline, and an emended description of the genus Sulfurimonas
-
Labrenz, M., Grote, J., Mammitzsch, K., Boschker, H.T., Laue, M., Jost, G., et al. (2013). Sulfurimonas gotlandica sp. nov., a chemoautotrophic and psychrotolerant epsilonproteobacterium isolated from a pelagic redoxcline, and an emended description of the genus Sulfurimonas. Int. J. Syst. Evol. Microbiol. 63, 4141-4148. doi: 10.1099/ijs.0.048827-0.
-
(2013)
Int. J. Syst. Evol. Microbiol.
, vol.63
, pp. 4141-4148
-
-
Labrenz, M.1
Grote, J.2
Mammitzsch, K.3
Boschker, H.T.4
Laue, M.5
Jost, G.6
-
53
-
-
0008048504
-
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses
-
Lane, D.J., Pace, B., Olsen, G.J., Stahl, D.A., Sogin, M.L., and Pace, N.R. (1985). Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc. Natl. Acad. Sci. U.S.A. 82, 6955-6959. doi: 10.1073/pnas.82.20.6955.
-
(1985)
Proc. Natl. Acad. Sci. U.S.A.
, vol.82
, pp. 6955-6959
-
-
Lane, D.J.1
Pace, B.2
Olsen, G.J.3
Stahl, D.A.4
Sogin, M.L.5
Pace, N.R.6
-
54
-
-
84858706297
-
Arcobacter bivalviorum sp. nov. and Arcobacter venerupis sp. nov., new species isolated from shellfish
-
Levican, A., Collado, L., Aguilar, C., Yustes, C., Dieguez, A.L., Romalde, J.L., et al. (2012). Arcobacter bivalviorum sp. nov. and Arcobacter venerupis sp. nov., new species isolated from shellfish. Syst. Appl. Microbiol. 35, 133-138. doi: 10.1016/j.syapm.2012.01.002.
-
(2012)
Syst. Appl. Microbiol.
, vol.35
, pp. 133-138
-
-
Levican, A.1
Collado, L.2
Aguilar, C.3
Yustes, C.4
Dieguez, A.L.5
Romalde, J.L.6
-
55
-
-
84874333028
-
Arcobacter cloacae sp. nov. and Arcobacter suis sp. nov., two new species isolated from food and sewage
-
Levican, A., Collado, L., and Figueras, M.J. (2013). Arcobacter cloacae sp. nov. and Arcobacter suis sp. nov., two new species isolated from food and sewage. Syst. Appl. Microbiol. 36, 22-27. doi: 10.1016/j.syapm.2012.11.003.
-
(2013)
Syst. Appl. Microbiol.
, vol.36
, pp. 22-27
-
-
Levican, A.1
Collado, L.2
Figueras, M.J.3
-
56
-
-
33845355867
-
Characterization of a HoxEFUYH type of [NiFe] hydrogenase from Allochromatium vinosum and some EPR and IR properties of the hydrogenase module
-
Long, M., Liu, J., Chen, Z., Bleijlevens, B., Roseboom, W., and Albracht, S.J. (2007). Characterization of a HoxEFUYH type of [NiFe] hydrogenase from Allochromatium vinosum and some EPR and IR properties of the hydrogenase module. J. Biol. Inorg. Chem. 12, 62-78. doi: 10.1007/s00775-006-0162-1.
-
(2007)
J. Biol. Inorg. Chem.
, vol.12
, pp. 62-78
-
-
Long, M.1
Liu, J.2
Chen, Z.3
Bleijlevens, B.4
Roseboom, W.5
Albracht, S.J.6
-
57
-
-
0029790133
-
Humic substances as electron acceptors for microbial respiration
-
Lovley, D.R., Coates, J.D., BluntHarris, E.L., Phillips, E.J. P., and Woodward, J.C. (1996). Humic substances as electron acceptors for microbial respiration. Nature 382, 445-448. doi: 10.1038/382445a0.
-
(1996)
Nature
, vol.382
, pp. 445-448
-
-
Lovley, D.R.1
Coates, J.D.2
BluntHarris, E.L.3
Phillips, E.J.P.4
Woodward, J.C.5
-
58
-
-
0037640029
-
Description of Sulfurospirillum halorespirans sp. nov., an anaerobic, tetrachloroethene-respiring bacterium, and transfer of Dehalospirillum multivorans to the genus Sulfurospirillum as Sulfurospirillum multivorans comb. nov
-
Luijten, M.L., de Weert, J., Smidt, H., Boschker, H.T., de Vos, W.M., Schraa, G., et al. (2003). Description of Sulfurospirillum halorespirans sp. nov., an anaerobic, tetrachloroethene-respiring bacterium, and transfer of Dehalospirillum multivorans to the genus Sulfurospirillum as Sulfurospirillum multivorans comb. nov. Int. J. Syst. Evol. Microbiol. 53, 787-793. doi: 10.1099/ijs.0.02417-0.
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 787-793
-
-
Luijten, M.L.1
de Weert, J.2
Smidt, H.3
Boschker, H.T.4
de Vos, W.M.5
Schraa, G.6
-
59
-
-
85010439719
-
A procedure for the isolation of deoxyribonucleic acid from micro-organisms
-
Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J. Mol. Biol. 3, 208-218. doi: 10.1016/S0022-2836(61)80047-8.
-
(1961)
J. Mol. Biol.
, vol.3
, pp. 208-218
-
-
Marmur, J.1
-
60
-
-
0019165744
-
Isolation of a nitrogen-fixing Campylobacter species from the roots of Spartina alterniflora Loisel
-
McClung, C.R., and Patriquin, D.G. (1980). Isolation of a nitrogen-fixing Campylobacter species from the roots of Spartina alterniflora Loisel. Can. J. Microbiol. 26, 881-886. doi: 10.1139/m80-153.
-
(1980)
Can. J. Microbiol.
, vol.26
, pp. 881-886
-
-
McClung, C.R.1
Patriquin, D.G.2
-
61
-
-
0021099774
-
The purification and characterization of the cytochrome d terminal oxidase complex of the Escherichia coli aerobic respiratory chain
-
Miller, M.J., and Gennis, R.B. (1983). The purification and characterization of the cytochrome d terminal oxidase complex of the Escherichia coli aerobic respiratory chain. J. Biol. Chem. 258, 9159-9165.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 9159-9165
-
-
Miller, M.J.1
Gennis, R.B.2
-
62
-
-
43349108455
-
The complete genome sequence and analysis of the Epsilonproteobacterium Arcobacter butzleri
-
Miller, W.G., Parker, C.T., Rubenfield, M., Mendz, G.L., Wösten, M.M., Ussery, D.W., et al. (2007). The complete genome sequence and analysis of the Epsilonproteobacterium Arcobacter butzleri. PLoS ONE 2:e1358. doi: 10.1371/journal.pone.0001358.
-
(2007)
PLoS ONE
, vol.2
, pp. e1358
-
-
Miller, W.G.1
Parker, C.T.2
Rubenfield, M.3
Mendz, G.L.4
Wösten, M.M.5
Ussery, D.W.6
-
63
-
-
84907053838
-
Sulfurovum aggregans sp. nov., a hydrogen-oxidizing, thiosulfate-reducing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent chimney, and an emended description of the genus Sulfurovum
-
Mino, S., Kudo, H., Arai, T., Sawabe, T., Takai, K., and Nakagawa, S. (2014). Sulfurovum aggregans sp. nov., a hydrogen-oxidizing, thiosulfate-reducing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent chimney, and an emended description of the genus Sulfurovum. Int. J. Syst. Evol. Microbiol. 64, 3195-3201. doi: 10.1099/ijs.0.065094-0.
-
(2014)
Int. J. Syst. Evol. Microbiol.
, vol.64
, pp. 3195-3201
-
-
Mino, S.1
Kudo, H.2
Arai, T.3
Sawabe, T.4
Takai, K.5
Nakagawa, S.6
-
64
-
-
0036022467
-
Nautilia lithotrophica gen. nov., sp. nov., a thermophilic sulfur-reducing Epsilonproteobacterium isolated from a deep-sea hydrothermal vent
-
Miroshnichenko, M.L., Kostrikina, N.A., L'Haridon, S., Jeanthon, C., Hippe, H., Stackebrandt, E., et al. (2002). Nautilia lithotrophica gen. nov., sp. nov., a thermophilic sulfur-reducing Epsilonproteobacterium isolated from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 52, 1299-1304. doi: 10.1099/ijs.0.02139-0.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1299-1304
-
-
Miroshnichenko, M.L.1
Kostrikina, N.A.2
L'Haridon, S.3
Jeanthon, C.4
Hippe, H.5
Stackebrandt, E.6
-
65
-
-
0033865171
-
Denitrovibrio acetiphilus, a novel genus and species of dissimilatory nitrate-reducing bacterium isolated from an oil reservoir model column
-
Myhr, S., and Torsvik, T. (2000). Denitrovibrio acetiphilus, a novel genus and species of dissimilatory nitrate-reducing bacterium isolated from an oil reservoir model column. Int. J. Syst. Evol. Microbiol. 50, 1611-1619. doi: 10.1099/00207713-50-4-1611.
-
(2000)
Int. J. Syst. Evol. Microbiol.
, vol.50
, pp. 1611-1619
-
-
Myhr, S.1
Torsvik, T.2
-
66
-
-
16844381589
-
Thioreductor micantisoli gen. nov., sp. nov., a novel mesophilic, sulfur-reducing chemolithoautotroph within the Epsilonproteobacteria isolated from hydrothermal sediments in the Mid-Okinawa Trough
-
Nakagawa, S., Inagaki, F., Takai, K., Horikoshi, K., and Sako, Y. (2005a). Thioreductor micantisoli gen. nov., sp. nov., a novel mesophilic, sulfur-reducing chemolithoautotroph within the Epsilonproteobacteria isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int. J. Syst. Evol. Microbiol. 55, 599-605. doi: 10.1099/ijs.0.63480-0.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 599-605
-
-
Nakagawa, S.1
Inagaki, F.2
Takai, K.3
Horikoshi, K.4
Sako, Y.5
-
67
-
-
16844387103
-
Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the Epsilonproteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough
-
Nakagawa, S., Takai, K., Inagaki, F., Horikoshi, K., and Sako, Y. (2005b). Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the Epsilonproteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough. Int. J. Syst. Evol. Microbiol. 55, 925-933. doi: 10.1099/ijs.0.63480-0.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 925-933
-
-
Nakagawa, S.1
Takai, K.2
Inagaki, F.3
Horikoshi, K.4
Sako, Y.5
-
68
-
-
84876690996
-
Nonpathogenic Epsilonproteobacteria
-
(Chichester: John Wiley & Sons, Ltd.)
-
Nakagawa, S., and Takaki, Y. (2009). "Nonpathogenic Epsilonproteobacteria," in Encyclopedia of Life Sciences (ELS) (Chichester: John Wiley & Sons, Ltd.).
-
(2009)
Encyclopedia of Life Sciences (ELS)
-
-
Nakagawa, S.1
Takaki, Y.2
-
69
-
-
34547549547
-
Deep-sea vent epsilonproteobacterial genomes provide insights into emergence of pathogens
-
Nakagawa, S., Takaki, Y., Shimamura, S., Reysenbach, A.-L., Takai, K., and Horikoshi, K. (2007). Deep-sea vent epsilonproteobacterial genomes provide insights into emergence of pathogens. Proc. Natl. Acad. Sci. U.S.A. 104, 12146-12150. doi: 10.1073/pnas.0700687104.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 12146-12150
-
-
Nakagawa, S.1
Takaki, Y.2
Shimamura, S.3
Reysenbach, A.-L.4
Takai, K.5
Horikoshi, K.6
-
70
-
-
0031439437
-
Sediment bacteria: who's there, what are they doing, and what's new?
-
Nealson, K.H. (1997). Sediment bacteria: who's there, what are they doing, and what's new? Annu. Rev. Earth Planetary Sci. 25, 403-434. doi: 10.1146/annurev.earth.25.1.403.
-
(1997)
Annu Rev. Earth Planetary Sci.
, vol.25
, pp. 403-434
-
-
Nealson, K.H.1
-
71
-
-
0021809465
-
Taxonomic position of Campylobacter cryaerophila sp. nov
-
Neill, S.D., Campbell, J.N., Obrien, J.J., Weatherup, S.T. C., and Ellis, W.A. (1985). Taxonomic position of Campylobacter cryaerophila sp. nov. Int. J. Syst. Bacteriol. 35, 342-356. doi: 10.1099/00207713-35-3-342.
-
(1985)
Int. J. Syst. Bacteriol.
, vol.35
, pp. 342-356
-
-
Neill, S.D.1
Campbell, J.N.2
Obrien, J.J.3
Weatherup, S.T.C.4
Ellis, W.A.5
-
72
-
-
0034660186
-
Potential for nonenzymatic reduction of Fe(III) via electron shuttling in subsurface sediments
-
Nevin, K.P., and Lovley, D.R. (2000). Potential for nonenzymatic reduction of Fe(III) via electron shuttling in subsurface sediments. Environ. Sci. Technol. 34, 2472-2478. doi: 10.1021/es991181b.
-
(2000)
Environ. Sci. Technol.
, vol.34
, pp. 2472-2478
-
-
Nevin, K.P.1
Lovley, D.R.2
-
73
-
-
79958053971
-
Microbial ecology of the dark ocean above, at, and below the seafloor
-
Orcutt, B.N., Sylvan, J.B., Knab, N.J., and Edwards, K.J. (2011). Microbial ecology of the dark ocean above, at, and below the seafloor. Microbiol. Mol. Biol. Rev. 75, 361-422. doi: 10.1128/MMBR. 00039-10.
-
(2011)
Microbiol. Mol. Biol. Rev.
, vol.75
, pp. 361-422
-
-
Orcutt, B.N.1
Sylvan, J.B.2
Knab, N.J.3
Edwards, K.J.4
-
74
-
-
84891804612
-
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
-
Overbeek, R., Olson, R., Pusch, G.D., Olsen, G.J., Davis, J.J., Disz, T., et al. (2014). The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res. 42, D206-D214. doi: 10.1093/nar/gkt1226.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D206-D214
-
-
Overbeek, R.1
Olson, R.2
Pusch, G.D.3
Olsen, G.J.4
Davis, J.J.5
Disz, T.6
-
75
-
-
0022620796
-
Hydrogenase activities in cyanobacteria
-
Papen, H., Kentemich, T., Schmulling, T., and Bothe, H. (1986). Hydrogenase activities in cyanobacteria. Biochimie 68, 121-132. doi: 10.1016/S0300-9084(86)81077-X.
-
(1986)
Biochimie
, vol.68
, pp. 121-132
-
-
Papen, H.1
Kentemich, T.2
Schmulling, T.3
Bothe, H.4
-
76
-
-
78751503218
-
Complete genome sequence of Arcobacter nitrofigilis type strain (CIT)
-
Pati, A., Gronow, S., Lapidus, A., Copeland, A., Glavina Del Rio, T., Nolan, M., et al. (2010). Complete genome sequence of Arcobacter nitrofigilis type strain (CIT). Stand. Genomic Sci. 2, 300-308. doi: 10.4056/sigs.912121.
-
(2010)
Stand. Genomic Sci.
, vol.2
, pp. 300-308
-
-
Pati, A.1
Gronow, S.2
Lapidus, A.3
Copeland, A.4
Glavina Del Rio, T.5
Nolan, M.6
-
77
-
-
0021044309
-
On the redox control of synthesis of anaerobically induced enzymes in Enterobacteriaceae
-
Pecher, A., Zinoni, F., Jatisatienr, C., Wirth, R., Hennecke, H., and Bock, A. (1983). On the redox control of synthesis of anaerobically induced enzymes in Enterobacteriaceae. Arch. Microbiol. 136, 131-136. doi: 10.1007/BF00404787.
-
(1983)
Arch. Microbiol.
, vol.136
, pp. 131-136
-
-
Pecher, A.1
Zinoni, F.2
Jatisatienr, C.3
Wirth, R.4
Hennecke, H.5
Bock, A.6
-
78
-
-
0017304611
-
Desulfuromonas acetoxidans gen. nov. and sp. nov., a new anaerobic, sulfur-reducing acetate-oxidizing bacterium
-
Pfennig, N., and Biebl, H. (1976). Desulfuromonas acetoxidans gen. nov. and sp. nov., a new anaerobic, sulfur-reducing, acetate-oxidizing bacterium. Arch. Microbiol. 110, 3-12. doi: 10.1007/BF00416962.
-
(1976)
Arch. Microbiol.
, vol.110
, pp. 3-12
-
-
Pfennig, N.1
Biebl, H.2
-
79
-
-
84929656645
-
Spatial scales of bacterial community diversity at cold seeps (Eastern Mediterranean Sea)
-
Pop Ristova, P., Wenzhöfer, F., Ramette, A., Felden, J., and Boetius, A. (2015). Spatial scales of bacterial community diversity at cold seeps (Eastern Mediterranean Sea). ISME J. 9, 1306-1318. doi: 10.1038/ismej.2014.217.
-
(2015)
ISME J
, vol.9
, pp. 1306-1318
-
-
Pop Ristova, P.1
Wenzhöfer, F.2
Ramette, A.3
Felden, J.4
Boetius, A.5
-
80
-
-
2142712975
-
Cyanobacterial-type, heteropentameric NAD(+)-reducing NiFe hydrogenase in the purple sulfur photosynthetic bacterium Thiocapsa roseopersicina\
-
Rákhely, G., Kovács, Á. T., Maróti, G., Fodor, B.D., Csanádi, G., Latinovics, D., et al. (2004). Cyanobacterial-type, heteropentameric. NAD(+)-reducing NiFe hydrogenase in the purple sulfur photosynthetic bacterium Thiocapsa roseopersicina. Appl. Environ. Microbiol. 70, 722-728.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 722-728
-
-
Rákhely, G.1
Kovács, Á.2
Maróti, G.3
Fodor, B.D.4
Csanádi, G.5
Latinovics, D.6
-
81
-
-
38749105868
-
The MEROPS batch BLAST: a tool to detect peptidases and their non-peptidase homologues in a genome
-
Rawlings, N.D., and Morton, F.R. (2008). The MEROPS batch BLAST: a tool to detect peptidases and their non-peptidase homologues in a genome. Biochimie 90, 243-259. doi: 10.1016/j.biochi.2007.09.014.
-
(2008)
Biochimie
, vol.90
, pp. 243-259
-
-
Rawlings, N.D.1
Morton, F.R.2
-
82
-
-
21344461500
-
Extracellular electron transfer via microbial nanowires
-
Reguera, G., McCarthy, K.D., Mehta, T., Nicoll, J.S., Tuominen, M.T., and Lovley, D.R. (2005). Extracellular electron transfer via microbial nanowires. Nature 435, 1098-1101. doi: 10.1038/nature03661.
-
(2005)
Nature
, vol.435
, pp. 1098-1101
-
-
Reguera, G.1
McCarthy, K.D.2
Mehta, T.3
Nicoll, J.S.4
Tuominen, M.T.5
Lovley, D.R.6
-
83
-
-
0031059022
-
Terminal oxidases of Azoarcus sp. BH72, a strictly respiratory diazotroph
-
Reinhold-Hurek, B., and Zhulin, I.B. (1997). Terminal oxidases of Azoarcus sp. BH72, a strictly respiratory diazotroph. FEBS Lett. 404, 143-147. doi: 10.1016/S0014-5793(97)00111-7.
-
(1997)
FEBS Lett
, vol.404
, pp. 143-147
-
-
Reinhold-Hurek, B.1
Zhulin, I.B.2
-
84
-
-
0039739602
-
On the Gram-differentiation of bacteria by the simplest method
-
Ryu, E. (1938). On the Gram-differentiation of bacteria by the simplest method. J. Vet. Med. Sci. 17, 31.
-
(1938)
J. Vet. Med. Sci.
, vol.17
, pp. 31
-
-
Ryu, E.1
-
85
-
-
84889563225
-
Arcobacter anaerophilus sp. nov., isolated from an estuarine sediment and emended description of the genus Arcobacter
-
Sasi Jyothsna, T.S., Rahul, K., Ramaprasad, E.V., Sasikala, C., and Ramana, C.V. (2013). Arcobacter anaerophilus sp. nov., isolated from an estuarine sediment and emended description of the genus Arcobacter. Int. J. Syst. Evol. Microbiol. 63, 4619-4625. doi: 10.1099/ijs.0.054155-0.
-
(2013)
Int. J. Syst. Evol. Microbiol
, vol.63
, pp. 4619-4625
-
-
Sasi Jyothsna, T.S.1
Rahul, K.2
Ramaprasad, E.V.3
Sasikala, C.4
Ramana, C.V.5
-
86
-
-
84901417347
-
Prokka: rapid prokaryotic genome annotation
-
Seemann, T. (2014). Prokka: rapid prokaryotic genome annotation. Bioinformatics 30, 2068-2069. doi: 10.1093/bioinformatics/btu153.
-
(2014)
Bioinformatics
, vol.30
, pp. 2068-2069
-
-
Seemann, T.1
-
87
-
-
39649088960
-
Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans
-
Sievert, S.M., Scott, K.M., Klotz, M.G., Chain, P.S., Hauser, L.J., Hemp, J., et al. (2008). Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans. Appl. Environ. Microbiol. 74, 1145-1156. doi: 10.1128/AEM. 01844-07.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 1145-1156
-
-
Sievert, S.M.1
Scott, K.M.2
Klotz, M.G.3
Chain, P.S.4
Hauser, L.J.5
Hemp, J.6
-
88
-
-
79957549093
-
Complete genome sequence of Sulfurimonas autotrophica type strain (OK10T)
-
Sikorski, J., Munk, C., Lapidus, A., Ngatchou, D., Lucas, S., Glavina, T.D., et al. (2010). Complete genome sequence of Sulfurimonas autotrophica type strain (OK10T). Stand. Genomic Sci. 3, 194-202. doi: 10.4056/sigs.1173118.
-
(2010)
Stand. Genomic Sci.
, vol.3
, pp. 194-202
-
-
Sikorski, J.1
Munk, C.2
Lapidus, A.3
Ngatchou, D.4
Lucas, S.5
Glavina, T.D.6
-
89
-
-
3042689049
-
The unprecedented nos gene cluster of Wolinella succinogenes encodes a novel respiratory electron transfer pathway to cytochrome c nitrous oxide reductase
-
Simon, J., Einsle, O., Kroneck, P.M., and Zumft, W.G. (2004). The unprecedented nos gene cluster of Wolinella succinogenes encodes a novel respiratory electron transfer pathway to cytochrome c nitrous oxide reductase. FEBS Lett. 569, 7-12. doi: 10.1016/j.febslet.2004.05.060.
-
(2004)
FEBS Lett
, vol.569
, pp. 7-12
-
-
Simon, J.1
Einsle, O.2
Kroneck, P.M.3
Zumft, W.G.4
-
90
-
-
33750020599
-
Thiomicrospira halophila sp. nov., a moderately halophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacterium from hypersaline lakes
-
Sorokin, D.Y., Tourova, T.P., Kolganova, T.V., Spiridonova, E.M., Berg, I.A., and Muyzer, G. (2006). Thiomicrospira halophila sp. nov., a moderately halophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacterium from hypersaline lakes. Int. J. Syst. Evol. Microbiol. 56, 2375-2380. doi: 10.1099/ijs.0.64445-0.
-
(2006)
Int. J. Syst. Evol. Microbiol.
, vol.56
, pp. 2375-2380
-
-
Sorokin, D.Y.1
Tourova, T.P.2
Kolganova, T.V.3
Spiridonova, E.M.4
Berg, I.A.5
Muyzer, G.6
-
91
-
-
84890812520
-
Nitrate and periplasmic nitrate reductases
-
Sparacino-Watkins, C., Stolz, J.F., and Basu, P. (2014). Nitrate and periplasmic nitrate reductases. Chem. Soc. Rev. 43, 676-706. doi: 10.1039/c3cs60249d.
-
(2014)
Chem. Soc. Rev.
, vol.43
, pp. 676-706
-
-
Sparacino-Watkins, C.1
Stolz, J.F.2
Basu, P.3
-
92
-
-
0033064952
-
Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the Epsilonproteobacteria
-
Stolz, J.F., Ellis, D.J., Blum, J.S., Ahmann, D., Lovley, D.R., and Oremland, R.S. (1999). Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the Epsilonproteobacteria. Int. J. Syst. Bacteriol. 49, 1177-1180. doi: 10.1099/00207713-49-3-1177.
-
(1999)
Int. J. Syst. Bacteriol.
, vol.49
, pp. 1177-1180
-
-
Stolz, J.F.1
Ellis, D.J.2
Blum, J.S.3
Ahmann, D.4
Lovley, D.R.5
Oremland, R.S.6
-
93
-
-
84938703534
-
Seasonal dynamics of marine microbial community in the South Sea of Korea
-
Suh, S.-S., Park, M., Hwang, J., Kil, E.-J., Jung, S.W., Lee, S., et al. (2015). Seasonal dynamics of marine microbial community in the South Sea of Korea. PLoS ONE 10:e0131633. doi: 10.1371/journal.pone.0131633.
-
(2015)
PLoS ONE
, vol.10
-
-
Suh, S.-S.1
Park, M.2
Hwang, J.3
Kil, E.-J.4
Jung, S.W.5
Lee, S.6
-
94
-
-
9744273114
-
Thiomicrospira thermophila sp. nov., a novel microaerobic thermotolerant, sulfur-oxidizing chemolithomixotroph isolated from a deep-sea hydrothermal fumarole in the TOTO caldera
-
Takai, K., Hirayama, H., Nakagawa, T., Suzuki, Y., Nealson, K.H., and Horikoshi, K. (2004). Thiomicrospira thermophila sp. nov., a novel microaerobic, thermotolerant, sulfur-oxidizing chemolithomixotroph isolated from a deep-sea hydrothermal fumarole in the TOTO caldera. Mariana Arc, Western Pacific. Int. J. Syst. Evol. Microbiol. 54, 2325-2333. doi: 10.1099/ijs.0.63284-0.
-
(2004)
Mariana Arc, Western Pacific. Int. J. Syst. Evol. Microbiol.
, vol.54
, pp. 2325-2333
-
-
Takai, K.1
Hirayama, H.2
Nakagawa, T.3
Suzuki, Y.4
Nealson, K.H.5
Horikoshi, K.6
-
95
-
-
13244255659
-
Lebetimonas acidiphila gen. nov., sp. nov., a novel thermophilic, acidophilic, hydrogen-oxidizing chemolithoautotroph within the Epsilonproteobacteria, isolated from a deep-sea hydrothermal fumarole in the Mariana Arc
-
Takai, K., Hirayama, H., Nakagawa, T., Suzuki, Y., Nealson, K.H., and Horikoshi, K. (2005). Lebetimonas acidiphila gen. nov., sp. nov., a novel thermophilic, acidophilic, hydrogen-oxidizing chemolithoautotroph within the Epsilonproteobacteria, isolated from a deep-sea hydrothermal fumarole in the Mariana Arc. Int. J. Syst. Evol. Microbiol. 55, 183-189. doi: 10.1099/ijs.0.63330-0.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 183-189
-
-
Takai, K.1
Hirayama, H.2
Nakagawa, T.3
Suzuki, Y.4
Nealson, K.H.5
Horikoshi, K.6
-
96
-
-
33747889276
-
Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen-and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas
-
Takai, K., Suzuki, M., Nakagawa, S., Miyazaki, M., Suzuki, Y., Inagaki, F., et al. (2006). Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas. Int. J. Syst. Evol. Microbiol. 56, 1725-1733.
-
(2006)
Int. J. Syst. Evol. Microbiol.
, vol.56
, pp. 1725-1733
-
-
Takai, K.1
Suzuki, M.2
Nakagawa, S.3
Miyazaki, M.4
Suzuki, Y.5
Inagaki, F.6
-
97
-
-
0036198693
-
Hydrogenases and hydrogen metabolism of cyanobacteria
-
Tamagnini, P., Axelsson, R., Lindberg, P., Oxelfelt, F., Wunschiers, R., and Lindblad, P. (2002). Hydrogenases and hydrogen metabolism of cyanobacteria. Microbiol. Mol. Biol. Rev. 66, 1-20. doi: 10.1128/MMBR.66.1.1-20.2002.
-
(2002)
Microbiol. Mol. Biol. Rev.
, vol.66
, pp. 1-20
-
-
Tamagnini, P.1
Axelsson, R.2
Lindberg, P.3
Oxelfelt, F.4
Wunschiers, R.5
Lindblad, P.6
-
98
-
-
0029851898
-
Molecular identification of bacteria from a coculture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments as a tool for isolation in pure cultures
-
Teske, A., Sigalevich, P., Cohen, Y., and Muyzer, G. (1996). Molecular identification of bacteria from a coculture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments as a tool for isolation in pure cultures. Appl. Environ. Microbiol. 62, 4210-4215.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 4210-4215
-
-
Teske, A.1
Sigalevich, P.2
Cohen, Y.3
Muyzer, G.4
-
99
-
-
84906943733
-
Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics
-
Urich, T., Lanzen, A., Stokke, R., Pedersen, R.B., Bayer, C., Thorseth, I.H., et al. (2014). Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics. Environ. Microbiol. 16, 2699-2710. doi: 10.1111/1462-2920.12283.
-
(2014)
Environ. Microbiol.
, vol.16
, pp. 2699-2710
-
-
Urich, T.1
Lanzen, A.2
Stokke, R.3
Pedersen, R.B.4
Bayer, C.5
Thorseth, I.H.6
-
100
-
-
0027945755
-
Proposal of minimal standards for describing new species of the family Campylobacteraceae
-
Ursing, J.B., Lior, H., and Owen, R.J. (1994). Proposal of minimal standards for describing new species of the family Campylobacteraceae. Int. J. Syst. Bacteriol. 44, 842-845. doi: 10.1099/00207713-44-4-842.
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 842-845
-
-
Ursing, J.B.1
Lior, H.2
Owen, R.J.3
-
101
-
-
0025960666
-
Revision of Campylobacter, Helicobacter, and Wolinella taxonomy: emendation of generic descriptions and proposal of Arcobacter gen. nov
-
Vandamme, P., Falsen, E., Rossau, R., Hoste, B., Segers, P., Tytgat, R., et al. (1991). Revision of Campylobacter, Helicobacter, and Wolinella taxonomy: emendation of generic descriptions and proposal of Arcobacter gen. nov. Int. J. Syst. Evol. Microbiol. 41, 88-103.
-
(1991)
Int. J. Syst. Evol. Microbiol.
, vol.41
, pp. 88-103
-
-
Vandamme, P.1
Falsen, E.2
Rossau, R.3
Hoste, B.4
Segers, P.5
Tytgat, R.6
-
102
-
-
0026637182
-
Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens
-
Vandamme, P., Vancanneyt, M., Pot, B., Mels, L., Hoste, B., Dewettinck, D., et al. (1992). Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens. Int. J. Syst. Bacteriol. 42, 344-356. doi: 10.1099/00207713-42-3-344.
-
(1992)
Int. J. Syst. Bacteriol.
, vol.42
, pp. 344-356
-
-
Vandamme, P.1
Vancanneyt, M.2
Pot, B.3
Mels, L.4
Hoste, B.5
Dewettinck, D.6
-
103
-
-
84903391139
-
Deep-sea hydrothermal vent Epsilonproteobacteria encode a conserved and widespread nitrate reduction pathway (Nap)
-
Vetriani, C., Voordeckers, J.W., Crespo-Medina, M., O'Brien, C.E., Giovannelli, D., and Lutz, R.A. (2014). Deep-sea hydrothermal vent Epsilonproteobacteria encode a conserved and widespread nitrate reduction pathway (Nap). ISME J. 8, 1510-1521. doi: 10.1038/ismej.2013.246.
-
(2014)
ISME J
, vol.8
, pp. 1510-1521
-
-
Vetriani, C.1
Voordeckers, J.W.2
Crespo-Medina, M.3
O'Brien, C.E.4
Giovannelli, D.5
Lutz, R.A.6
-
104
-
-
16844386813
-
Caminibacter mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge
-
Voordeckers, J.W., Starovoytov, V., and Vetriani, C. (2005). Caminibacter mediatlanticus sp. nov., a thermophilic, chemolithoautotrophic, nitrate-ammonifying bacterium isolated from a deep-sea hydrothermal vent on the Mid-Atlantic Ridge. Int. J. Syst. Evol. Microbiol. 55, 773-779. doi: 10.1099/ijs.0.63430-0.
-
(2005)
Int. J. Syst. Evol. Microbiol.
, vol.55
, pp. 773-779
-
-
Voordeckers, J.W.1
Starovoytov, V.2
Vetriani, C.3
-
105
-
-
0042389665
-
Coordinate regulation of the Escherichia coli formate dehydrogenase fdnGHI and fdhF genes in response to nitrate nitrite, and formate: roles for NarL and NarP
-
Wang, H., and Gunsalus, R.P. (2003). Coordinate regulation of the Escherichia coli formate dehydrogenase fdnGHI and fdhF genes in response to nitrate, nitrite, and formate: roles for NarL and NarP. J. Bacteriol. 185, 5076-5085. doi: 10.1128/JB.185.17.5076-5085.2003.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5076-5085
-
-
Wang, H.1
Gunsalus, R.P.2
-
106
-
-
0036140269
-
Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur
-
Wirsen, C.O., Sievert, S.M., Cavanaugh, C.M., Molyneaux, S.J., Ahmad, A., Taylor, L.T., et al. (2002). Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur. Appl. Environ. Microbiol. 68, 316-325. doi: 10.1128/AEM.68.1.316-325.2002.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 316-325
-
-
Wirsen, C.O.1
Sievert, S.M.2
Cavanaugh, C.M.3
Molyneaux, S.J.4
Ahmad, A.5
Taylor, L.T.6
|