Denitrovibrio acetiphilus, a novel genus and species of dissimilatory nitrate-reducing bacterium isolated from an oil reservoir model column

International Journal of Systematic and Evolutionary Microbiology

Volumn 50, Issue 4, 2000, Pages 1611-1619

  Myhr, Siri ^a   Torsvik, Terje ^a  

^a UNIVERSITY OF BERGEN   (Norway)

Author keywords

Denitrovibrio acetiphilus; Nitrate reducing bacterium; Oil reservoir model column

Indexed keywords

ACETIC ACID; ALCOHOL DERIVATIVE; ALKANE DERIVATIVE; AMMONIA; BENZOIC ACID; DNA BASE; FATTY ACID; FORMIC ACID; FUMARIC ACID; HYDROGEN; MALIC ACID; NITRATE; OXOGLUTARATE DEHYDROGENASE; PETROLEUM; PROLINE; PYRUVIC ACID; RNA 16S; SUGAR; SULFUR; THIOSULFATE;

ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIUM ISOLATION; CELL STRUCTURE; CITRIC ACID CYCLE; CONTROLLED STUDY; DENITROVIBRIO ACETIPHILUS; DNA BASE COMPOSITION; ENZYME ACTIVITY; FERMENTATION; GEOVIBRIO FERRIREDUCENS; GRAM NEGATIVE ANAEROBIC BACTERIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; REDUCTION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE;

BACTERIA (MICROORGANISMS); DENITROVIBRIO ACETIPHILUS; GEOVIBRIO FERRIREDUCENS; NEGIBACTERIA; VIBRIO;

EID: 0033865171     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-50-4-1611     Document Type: Article

References (48)

1. Amann, R. I. (1995). In situ identification of micro-organisms by whole cell hybridization with rRNA-targeted nucleic acid probes. Mol Microb Ecol 3.3.6, 1-15.
2. Barton, L. L., LeGall, J., Odom, J. M. & Peck, H. D., Jr (1983). Energy coupling to nitrite respiration in the sulfate-reducing bacterium Desulfovibrio gigas. J Bacteriol 153, 867-871.
3. Beeder, J. (1996). Sulfate-reducing prokaryotes from North Sea oil reservoirs; organisms, distribution and origin. PhD thesis, University of Bergen, Norway.
4. Beeder, J., Nilsen, R. K., Torsvik, T. & Lien, T. (1994). Archaeoglobus fulgidus isolated from hot North Sea oil field waters. Appl Environ Microbiol 60, 1227-1231.
5. Bokranz, M., Katz, J., Schrøder, I., Roberton, A. M. & Krøger, A. (1983). Energy metabolism and biosynthesis of Vibrio succinogenes growing with nitrate or nitrite as terminal electron acceptor. Arch Microbiol 135, 36-41.
6. Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
7. Buck, J. D. (1982). Nonstaining (KOH) method of gram reactions of marine bacteria. Appl Environ Microbiol 44, 992-993.
8. Caccavo, F., Jr, Coates, J. D., Rosello-Mora, R. A., Ludwig, W., Schleifer, K. H., Lovley, D. R. & McInerney, M. J. (1996). Geovibrio ferrireducens, a phylogenetically distinct dissimilatory Fe(III)-reducing bacterium. Arch Microbiol 165, 370-376.
9. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
10. Christensen, B., Torsvik, T. & Lien, T. (1992). Immuno-magnetically captured thermophilic sulfate-reducing bacteria from North Sea oil field waters. Appl Environ Microbiol 58, 1244-1248.
11. Emerson, D. & Revsbeck, N. P. (1994a). Investigation of an iron-oxidizing microbial mat community located near Aarhus, Denmark : field studies. Appl Environ Microbiol 60, 4022-4031.
12. Emerson, D. & Revsbeck, N. P. (1994b). Investigation of an iron-oxidizing microbial mat community located near Aarhus, Denmark: laboratory studies. Appl Environ Microbiol 60, 4032-4038.
13. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5.1. Department of Genetics, University of Washington, Seattle. WA, USA.
14. Fiala, G., Woese, C. R., Langworthy, T. A. & Stetter, K. O. (1990). Flexistipes sinusarabici, a novel genus and species of eubacteria occurring in the Atlantis II Deep brines of the Red Sea. Arch Microbiol 154, 120-126.
15. Frostegård, Å., Tunlid, A. & Bååth, E. (1993). Phospholipid fatty-acid composition, biomass and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Appl Environ Microbiol 59, 3605-3617.
16. Gottschalk, G. (1986). Bacterial fermentations. In Bacterial Metabolism. 2nd edn, pp. 208-282. New York: Springer.
17. Greene, A. C., Patel, B. K. C. & Sheehy, A. J. (1997). Deferribacter thermophilus gen. nov., sp. nov., a novel thermophilic manganese- and iron-reducing bacterium isolated from a petroleum reservoir. Int J Syst Bacteriol 47, 505-509.
18. 2- at neutral pH under anoxic conditions. Arch Microbiol 166, 308-314.
19. Hamilton, W. A. (1985). Sulphate-reducing bacteria and anaerobic corrosion. Annu Rev Microbiol 39, 195-217.
20. Herbert, B. N. (1987). Reservoir souring. In Microbial Problems in the Offshore Oil Industry, pp. 63-71. Edited by E. C. Hill, J. L. Shennan & R. J. Watkinson. Chichester: Wiley.
21. Hoff, K. A. (1988). Rapid and simple method for double staining of bacteria with 4,6-diamidino-2-phenylidole and fluorescein isothiocyanate-labelled antibodies. Appl Environ Microbiol 54, 2949-2952.
22. Jones, J. G., Gardener, S. & Simon, B. M. (1983). Bacterial reduction of ferric iron in a stratified eutrophic lake. J Gen Microbiol 129, 131-139.
23. Jones, J. G., Gardener, S. & Simon, B. M. (1984). Reduction of ferric iron by heterotrophic bacteria in lake sediments. J Gen Microbiol 130, 45-51.
24. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
25. Lien, T. & Beeder, J. (1997). Desulfobacter vibrioformis sp. nov., a sulfate reducer from a water-oil separation system. Int J Syst Bacteriol 47, 1124-1128.
26. Ljungdahl, L. G. & Wiegel, J. (1986). Working with anaerobic bacteria. In Manual of Industrial Microbiology, pp. 84-96. Edited by A. L. Demain & N. A. Solomon. Washington, DC: American Society for Microbiology.
27. Lovley, D. R. & Phillips, E. J. P. (1988). Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl Environ Microbiol 54, 1472-1480.
28. Maidak, B. L., Olsen, G. J., Larsen, N., Overbeek, R., McCaughey, M. J. & Woese, C. R. (1996). The Ribosomal Database Project (RDP). Nucleic Acids Res 24, 82-85.
29. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
30. Odden, E. (1998). Analyse av fosfolipid fettsyrer som biomarkører for modellering av det mikrobielle samfunn i biologiske renseprosesser. MSc thesis, Høgskolen i Telemark, Norway.
31. 12-requiring member of the family Rhodospillaceae. Int J Syst Bacteriol 28, 283-288.
32. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
33. Reinsel, M. A., Sears, J. T., Stewart, P. S. & McInerney, M. J. (1996). Control of microbial souring by nitrate, nitrite or glutaraldehyde injection in a sandstone column. J Ind Microbiol 17, 128-136.
34. Saitou, N. & Nei, M. (1987). The neighbor-joining method : a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
35. Schumacher, W. & Kroneck, P. M. H. (1992), Anaerobic energy metabolism of the sulfur-reducing bacterium 'Spirillum' 5175 during dissimilatory nitrate reduction to ammonia. Arch Microbiol 157, 464-470.
36. Schumacher, W., Kroneck, P. M. H. & Pfennig, N. (1992). Comparative systematic study on 'Spirillum' 5175, Campylobacter and Wolinella species: description of 'Spirillum' 5175 as Sulfurospirillum deleyianum gen. nov., spec. nov. Arch Microbiol 158, 287-293.
37. Solorzano, L. (1969). Determination of ammonia in natural waters by the phenol/hypochlorite method. Limnol Oceanogr 14, 799-801.
38. Sørensen, J. (1982). Reduction of ferric iron in anaerobic, marine sediment and interaction with reduction of nitrate and sulfate. Appl Environ Microbiol 43, 319-324.
39. Steenkamp, D. J. & Peck, H. D., Jr (1981). Proton translocation associated with nitrite respiration in Desulfovibrio desulfuricans. J Biol Chem 256, 5450-5458.
40. Straub, K. L., Benz, M., Schink, B. & Widdel, F. (1996). Anaerobic nitrate-dependent microbial oxidation of ferrous iron. Appl Environ Microbiol 62, 1458-1460.
41. Tiedje, J. M. (1988). Ecology of denitrification and dissimilatory nitrate reduction to ammonium. In Biology of Anaerobic Microorganisms, pp. 179-244. Edited by A. J. B. Zehnder. New York: Wiley.
42. de Vries, W., Niekus, H. G. D., Boellaard, M. & Stouthamer, A. H. (1980). Growth yields and energy generation by Campylobacter sputorum subspecies bubulus during growth in continuous culture with different hydrogen acceptors. Arch Microbiol 124, 221-227.
43. Widdel, F. (1988). Microbiology and ecology of sulfate- and sulfur-reducing bacteria. In Biology of Anaerobic Micro-organisms, pp. 469-585. Edited by A. J. B. Zehnder. New York: Wiley.
44. Widdel, F. & Pfennig, N. (1981). Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. I. Isolation of new sulfate-reducing bacteria enriched with acetate from saline environments. Description of Desulfobacter postgatei gen. nov., sp. nov. Arch Microbiol 129, 395-400.
45. Widdel, F., Kohring, G. W. & Mayer, F. (1983). Studies of dissimilatory sulfate-reducing bacteria thai decompose fatty acids. III. Characterization of the filamentous gliding Desulfonema limicola gen. nov. and sp. nov. and Desulfonema magnum sp. nov. Arch Microbiol 134, 286-294.
46. Wood, P. M. (1988). Chemolithotrophy. In Bacterial Energy Transduction, pp. 183-230. Edited by C. Anthony. London: Academic Press.
47. Zeikus, J. G., Fuchs, G., Kenealy, W. & Thauer, R. K. (1977). Oxidoreductases involved in cell carbon synthesis of Methano-bacterium thermoautotrophicum. J Bacteriol 132, 604-613.
48. Zumft, W. G. (1992). The denitrifying bacteria. In The Prokaryotes, 2nd edn. pp. 554-582. Edited by A. Balows, H. G. Truper. M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.