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Volumn 64, Issue , 2014, Pages 3195-3201

Sulfurovum aggregans sp. nov., A hydrogenoxidizing, Thiosulfate-reducing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent chimney, And an emended description of the genus Sulfurovum

Author keywords

[No Author keywords available]

Indexed keywords

2 PROPANOL; ACETIC ACID; CARBON DIOXIDE; CASAMINO ACID; CELLULOSE; CHITIN; CITRIC ACID; CYSTEINE; FORMALDEHYDE; FORMIC ACID; GENOMIC DNA; GLUCOSE; HYDROGEN; LACTOSE; MALTOSE; METHANOL; NITRATE; NITROGEN; OXYGEN; PEPTONE; PHENYLALANINE; PROLINE; PROPIONIC ACID; PYRUVIC ACID; RNA 16S; STARCH; THIOSULFATE; BACTERIAL DNA; DRUG DERIVATIVE; FARNOQUINONE; FATTY ACID; PHOSPHOLIPID; SEA WATER;

EID: 84907053838     PISSN: 14665026     EISSN: 14665034     Source Type: Journal    
DOI: 10.1099/ijs.0.065094-0     Document Type: Article
Times cited : (95)

References (37)
  • 2
    • 0002634377 scopus 로고
    • Isolation, growth, and maintenance of hyperthermophiles
    • Edited by F. T. Robb & A. R. Place. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory
    • Baross, J. A. (1995). Isolation, growth, and maintenance of hyperthermophiles. In Archaea, a Laboratory Manual. Thermophiles, pp. 15-23. Edited by F. T. Robb & A. R. Place. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
    • (1995) Archaea, a Laboratory Manual. Thermophiles , pp. 15-23
    • Baross, J.A.1
  • 3
    • 33646827488 scopus 로고    scopus 로고
    • The versatile e-proteobacteria: Key players in sulphidic habitats
    • Campbell, B. J., Engel, A. S., Porter, M. L. & Takai, K. (2006). The versatile e-proteobacteria: key players in sulphidic habitats. Nat Rev Microbiol 4, 458-468.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 458-468
    • Campbell, B.J.1    Engel, A.S.2    Porter, M.L.3    Takai, K.4
  • 4
    • 0031034880 scopus 로고    scopus 로고
    • Molecular identification and localization of filamentous symbiotic bacteria associated with the hydrothermal vent annelid Alvinella pompejana
    • Cary, S. C., Cottrell, M. T., Stein, J. L., Camacho, F. & Desbruyeres, D. (1997). Molecular identification and localization of filamentous symbiotic bacteria associated with the hydrothermal vent annelid Alvinella pompejana. Appl Environ Microbiol 63, 1124-1130.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 1124-1130
    • Cary, S.C.1    Cottrell, M.T.2    Stein, J.L.3    Camacho, F.4    Desbruyeres, D.5
  • 5
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 6
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 8
    • 33747878658 scopus 로고    scopus 로고
    • Class V. Epsilonproteobacteria class. nov
    • 2nd edn, The Proteobacteria, The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer
    • Garrity, G., Bell, J. & Lilburn, T. (2005). Class V. Epsilonproteobacteria class. nov. In Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), p. 1145-1194. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
    • (2005) Bergey’s Manual of Systematic Bacteriology , vol.2 , pp. 1145-1194
    • Garrity, G.1    Bell, J.2    Lilburn, T.3
  • 9
    • 2442680697 scopus 로고    scopus 로고
    • Novel forms of structural integration between microbes and a hydrothermal vent gastropod from the Indian Ocean
    • Goffredi, S. K., Warén, A., Orphan, V. J., Van Dover, C. L. & Vrijenhoek, R. C. (2004). Novel forms of structural integration between microbes and a hydrothermal vent gastropod from the Indian Ocean. Appl Environ Microbiol 70, 3082-3090.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3082-3090
    • Goffredi, S.K.1    Warén, A.2    Orphan, V.J.3    Van Dover, C.L.4    Vrijenhoek, R.C.5
  • 10
    • 0029035937 scopus 로고
    • Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana
    • Haddad, A., Camacho, F., Durand, P. & Cary, S. C. (1995). Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete Alvinella pompejana. Appl Environ Microbiol 61, 1679-1687.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1679-1687
    • Haddad, A.1    Camacho, F.2    Durand, P.3    Cary, S.C.4
  • 11
    • 0345328152 scopus 로고    scopus 로고
    • Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfuroxidizing e-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough
    • Inagaki, F., Takai, K., Kobayashi, H., Nealson, K. H. & Horikoshi, K. (2003). Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfuroxidizing e-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int J Syst Evol Microbiol 53, 1801-1805.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1801-1805
    • Inagaki, F.1    Takai, K.2    Kobayashi, H.3    Nealson, K.H.4    Horikoshi, K.5
  • 12
    • 5444247841 scopus 로고    scopus 로고
    • Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the e-Proteobacteria isolated from Okinawa Trough hydrothermal sediments
    • Inagaki, F., Takai, K., Nealson, K. H. & Horikoshi, K. (2004). Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the e-Proteobacteria isolated from Okinawa Trough hydrothermal sediments. Int J Syst Evol Microbiol 54, 1477-1482.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1477-1482
    • Inagaki, F.1    Takai, K.2    Nealson, K.H.3    Horikoshi, K.4
  • 13
    • 84857917014 scopus 로고    scopus 로고
    • Thermotomaculum hydrothermale gen. nov., sp. nov., a novel heterotrophic thermophile within the phylum Acidobacteria from a deep-sea hydrothermal vent chimney in the Southern Okinawa Trough
    • Izumi, H., Nunoura, T., Miyazaki, M., Mino, S., Toki, T., Takai, K., Sako, Y., Sawabe, T. & Nakagawa, S. (2012). Thermotomaculum hydrothermale gen. nov., sp. nov., a novel heterotrophic thermophile within the phylum Acidobacteria from a deep-sea hydrothermal vent chimney in the Southern Okinawa Trough. Extremophiles 16, 245-253.
    • (2012) Extremophiles , vol.16 , pp. 245-253
    • Izumi, H.1    Nunoura, T.2    Miyazaki, M.3    Mino, S.4    Toki, T.5    Takai, K.6    Sako, Y.7    Sawabe, T.8    Nakagawa, S.9
  • 14
    • 0022189739 scopus 로고
    • Review lecture: The chemosynthetic support of life and the microbial diversity at deep-sea hydrothermal vents
    • Jannasch, H. W. (1985). Review lecture: the chemosynthetic support of life and the microbial diversity at deep-sea hydrothermal vents. Proc R Soc Lond B Biol Sci 225, 277-297.
    • (1985) Proc R Soc Lond B Biol Sci , vol.225 , pp. 277-297
    • Jannasch, H.W.1
  • 15
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 16
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley
    • Lane, D. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.1
  • 18
    • 84865975486 scopus 로고    scopus 로고
    • Thiofractor thiocaminus gen. nov., sp. nov., a novel hydrogen-oxidizing, sulfur-reducing epsilonproteobacterium isolated from a deep-sea hydrothermal vent chimney in the Nikko Seamount field of the northern Mariana Arc
    • Makita, H., Nakagawa, S., Miyazaki, M., Nakamura, K., Inagaki, F. & Takai, K. (2012). Thiofractor thiocaminus gen. nov., sp. nov., a novel hydrogen-oxidizing, sulfur-reducing epsilonproteobacterium isolated from a deep-sea hydrothermal vent chimney in the Nikko Seamount field of the northern Mariana Arc. Arch Microbiol 194, 785-794.
    • (2012) Arch Microbiol , vol.194 , pp. 785-794
    • Makita, H.1    Nakagawa, S.2    Miyazaki, M.3    Nakamura, K.4    Inagaki, F.5    Takai, K.6
  • 20
    • 16844381589 scopus 로고    scopus 로고
    • Thioreductor micantisoli gen. nov., sp. nov., a novel mesophilic, sulfur-reducing chemolithoautotroph within the e-Proteobacteria isolated from hydrothermal sediments in the Mid-Okinawa Trough
    • Nakagawa, S., Inagaki, F., Takai, K., Horikoshi, K. & Sako, Y. (2005a). Thioreductor micantisoli gen. nov., sp. nov., a novel mesophilic, sulfur-reducing chemolithoautotroph within the e-Proteobacteria isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int J Syst Evol Microbiol 55, 599-605.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 599-605
    • Nakagawa, S.1    Inagaki, F.2    Takai, K.3    Horikoshi, K.4    Sako, Y.5
  • 21
    • 16844387103 scopus 로고    scopus 로고
    • Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the e-Proteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough
    • Nakagawa, S., Takai, K., Inagaki, F., Horikoshi, K. & Sako, Y. (2005b). Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the e-Proteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough. Int J Syst Evol Microbiol 55, 925-933.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 925-933
    • Nakagawa, S.1    Takai, K.2    Inagaki, F.3    Horikoshi, K.4    Sako, Y.5
  • 24
    • 0029124948 scopus 로고
    • Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site
    • Polz, M. F. & Cavanaugh, C. M. (1995). Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site. Proc Natl Acad Sci U S A 92, 7232-7236.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , pp. 7232-7236
    • Polz, M.F.1    Cavanaugh, C.M.2
  • 25
    • 84986870589 scopus 로고
    • The use of DAPI for identifying and counting aquatic microflora
    • Porter, K. & Feig, Y. (1980). The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25, 943-948.
    • (1980) Limnol Oceanogr , vol.25 , pp. 943-948
    • Porter, K.1    Feig, Y.2
  • 26
    • 0029798568 scopus 로고    scopus 로고
    • Rhodothermus obamensis sp. nov., a modern lineage of extremely thermophilic marine bacteria
    • Sako, Y., Takai, K., Ishida, Y., Uchida, A. & Katayama, Y. (1996). Rhodothermus obamensis sp. nov., a modern lineage of extremely thermophilic marine bacteria. Int J Syst Bacteriol 46, 1099-1104.
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 1099-1104
    • Sako, Y.1    Takai, K.2    Ishida, Y.3    Uchida, A.4    Katayama, Y.5
  • 28
    • 84857297313 scopus 로고    scopus 로고
    • Chemoautotrophy at deep-sea vents
    • Sievert, S. & Vetriani, C. (2012). Chemoautotrophy at deep-sea vents. Oceanography 25, 218-233.
    • (2012) Oceanography , vol.25 , pp. 218-233
    • Sievert, S.1    Vetriani, C.2
  • 29
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 30
    • 22144473272 scopus 로고    scopus 로고
    • Molecular phylogenetic and isotopic evidence of two lineages of chemoautotrophic endosymbionts distinct at the subdivision level harbored in one host-animal type: The genus Alviniconcha (Gastropoda: Provannidae)
    • Suzuki, Y., Sasaki, T., Suzuki, M., Tsuchida, S., Nealson, K. H. & Horikoshi, K. (2005). Molecular phylogenetic and isotopic evidence of two lineages of chemoautotrophic endosymbionts distinct at the subdivision level harbored in one host-animal type: the genus Alviniconcha (Gastropoda: Provannidae). FEMS Microbiol Lett 249, 105-112.
    • (2005) FEMS Microbiol Lett , vol.249 , pp. 105-112
    • Suzuki, Y.1    Sasaki, T.2    Suzuki, M.3    Tsuchida, S.4    Nealson, K.H.5    Horikoshi, K.6
  • 31
    • 0037458176 scopus 로고    scopus 로고
    • Isolation and phylogenetic diversity of members of previously uncultivated e-Proteobacteria in deep-sea hydrothermal fields
    • Takai, K., Inagaki, F., Nakagawa, S., Hirayama, H., Nunoura, T., Sako, Y., Nealson, K. H. & Horikoshi, K. (2003). Isolation and phylogenetic diversity of members of previously uncultivated e-Proteobacteria in deep-sea hydrothermal fields. FEMS Microbiol Lett 218, 167-174.
    • (2003) FEMS Microbiol Lett , vol.218 , pp. 167-174
    • Takai, K.1    Inagaki, F.2    Nakagawa, S.3    Hirayama, H.4    Nunoura, T.5    Sako, Y.6    Nealson, K.H.7    Horikoshi, K.8
  • 32
    • 33747889276 scopus 로고    scopus 로고
    • Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen-and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas
    • Takai, K., Suzuki, M., Nakagawa, S., Miyazaki, M., Suzuki, Y., Inagaki, F. & Horikoshi, K. (2006). Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen-and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas. Int J Syst Evol Microbiol 56, 1725-1733.
    • (2006) Int J Syst Evol Microbiol , vol.56 , pp. 1725-1733
    • Takai, K.1    Suzuki, M.2    Nakagawa, S.3    Miyazaki, M.4    Suzuki, Y.5    Inagaki, F.6    Horikoshi, K.7
  • 33
    • 0021715576 scopus 로고
    • Determination of DNA base composition by reversed-phase high-performance liquid chromatography
    • Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 15-23.
    • (1984) FEMS Microbiol Lett , vol.25 , pp. 15-23
    • Tamaoka, J.1    Komagata, K.2
  • 34
    • 0020638681 scopus 로고
    • Analysis of bacterial menaquinone mixtures by high performance lipid chromatography
    • Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance lipid chromatography. J Appl Microbiol 54, 31-36.
    • (1983) J Appl Microbiol , vol.54 , pp. 31-36
    • Tamaoka, J.1    Katayama-Fujimura, Y.2    Kuraishi, H.3
  • 35
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 36
    • 17844383481 scopus 로고    scopus 로고
    • Hydrothermal vent gastropods from the same family (Provannidae) harbour e-and c-proteobacterial endosymbionts
    • Urakawa, H., Dubilier, N., Fujiwara, Y., Cunningham, D. E., Kojima, S. & Stahl, D. A. (2005). Hydrothermal vent gastropods from the same family (Provannidae) harbour e-and c-proteobacterial endosymbionts. Environ Microbiol 7, 750-754.
    • (2005) Environ Microbiol , vol.7 , pp. 750-754
    • Urakawa, H.1    Dubilier, N.2    Fujiwara, Y.3    Cunningham, D.E.4    Kojima, S.5    Stahl, D.A.6
  • 37
    • 78650068013 scopus 로고    scopus 로고
    • Diversity and function of epibiotic microbial communities on the galatheid crab, Shinkaia crosnieri
    • Watsuji, T. O., Nakagawa, S., Tsuchida, S., Toki, T., Hirota, A., Tsunogai, U. & Takai, K. (2010). Diversity and function of epibiotic microbial communities on the galatheid crab, Shinkaia crosnieri. Microbes Environ 25, 288-294.
    • (2010) Microbes Environ , vol.25 , pp. 288-294
    • Watsuji, T.O.1    Nakagawa, S.2    Tsuchida, S.3    Toki, T.4    Hirota, A.5    Tsunogai, U.6    Takai, K.7


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