Arcobacter molluscorum sp. nov., a new species isolated from shellfish

Systematic and Applied Microbiology

Volumn 34, Issue 2, 2011, Pages 105-109

  Figueras, Maria José ^a   Collado, Luis ^a,b   Levican, Arturo ^a   Perez, Jessica ^a   Solsona, Maria Josep ^c   Yustes, Clara ^c  

^a FACULTAT DE MEDICINA I CIÈNCIES DE LA SALUT   (Spain)

^b UNIVERSIDAD AUSTRAL DE CHILE   (Chile)

^c Serveis Territorials de Salut de Tarragona   (Spain)

Author keywords

16S rRNA; Arcobacter; DDH; GyrB; RpoB; Shellfish

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING) B; HEAT SHOCK PROTEIN 60; RIBOSOME DNA; RIBOSOME RNA; RNA POLYMERASE BETA SUBUNIT;

ARCOBACTER; ARCOBACTER BUTZLERI; ARCOBACTER CIBARIUS; ARCOBACTER CRYAEROPHILUS; ARCOBACTER DEFLUVII; ARCOBACTER HALOPHILUS; ARCOBACTER MARINUS; ARCOBACTER MOLLUSCORUM; ARCOBACTER MYTILI; ARCOBACTER NITROFIGILIS; ARCOBACTER SKIRROWII; ARCOBACTER THEREIUS; ARCOBACTER TROPHIARUM; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; DNA DNA HYBRIDIZATION; ENTEROBACTERIAL REPETITIVE INTERGENIC CONSENSUS POLYMERASE CHAIN REACTION; GENE CLUSTER; GENE SEQUENCE; GENETIC LINE; GRAM NEGATIVE BACTERIUM; HYDROLYSIS; MUSSEL; NONHUMAN; NUCLEOTIDE SEQUENCE; OYSTER; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SPECIES HABITAT;

ANIMALS; ANTI-BACTERIAL AGENTS; ARCOBACTER; BIVALVIA; CATALASE; CEFOPERAZONE; DRUG RESISTANCE, BACTERIAL; MOLECULAR SEQUENCE DATA; OSTREIDAE; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; UREASE;

ARCOBACTER; ARCOBACTER HALOPHILUS; OSTREIDAE;

EID: 79952532691     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2010.10.001     Document Type: Article

References (37)

1. Chun J., Lee J.H., Jung Y., Kim M., Kim S., Kim B.K., Lim Y.W. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 2007, 57:2259-2261.
2. Collado L., Cleenwerck I., Van Trappen S., De Vos P., Figueras M.J. Arcobacter mytili sp. nov., an indoxyl acetate-hydrolysis-negative bacterium isolated from mussels. Int. J. Syst. Evol. Microbiol. 2009, 59:1391-1396.
3. Collado L., Guarro J., Figueras M.J. Prevalence of Arcobacter in meat and shellfish. J. Food. Prot. 2009, 72:1102-1106.
4. Collado L., Inza I., Guarro J., Figueras M.J. Presence of Arcobacter spp. in environmental waters correlates with high levels of fecal pollution. Environ. Microbiol. 2008, 10:1635-1640.
5. Collado L., Kashmir G., Perez U., Bosch A., Pinto R., Saucedo G., Huguet J.M., Figueras M.J. Occurrence and diversity of Arcobacter spp. along the Llobregat River catchment, at sewage effluents and in a drinking water treatment plant. Water. Res. 2010, 44:3696-3702.
6. Collado, L., Levicán, A., Perez, J., Figueras, M.J. (in press) Arcobacter defluvii sp. nov., isolated from sewage samples. Int. J. Syst. Evol. Microbiol., doi:10.1099/ijs.0.025668-0.
7. De Smet, S., Vandamme, P., De Zutter, L., On, S., Douidah, L., Houf, K. (in press) Arcobacter trophiarum sp. nov. isolated from fattening pigs. Int. J. Syst. Evol. Microbiol., doi:10.1099/ijs.0.022665-0.
8. Debruyne L., Gevers D., Vandamme P. Taxonomy of the family campylobactereaceae. Campylobacter 2008, 3-25. ASM press, Washington, DC. Third Edition. I. Nachamkin, C. Szymanski, M. Blaser (Eds.).
9. Debruyne L., Houf K., Douidah L., De Smet S., Vandamme P. Reassessment of the taxonomy of Arcobacter cryaerophilus. Syst. Appl. Microbiol. 2010, 33:7-14.
10. Donachie S.P., Bowman J.P., On S.L., Alam M. Arcobacter halophilus sp. nov., the first obligate halophile in the genus Arcobacter. Int. J. Syst. Evol. Microbiol. 2005, 55:1271-1277.
11. Douidah L., De Zutter L., Vandamme P., Houf K. Identification of five human and mammal associated Arcobacter species by a novel multiplex-PCR assay. J. Microbiol. Methods 2010, 80:281-286.
12. Fera M.T., Maugeri T.L., Gugliandolo C., Beninati C., Giannone M., La Camera E., Carbone M. Detection of Arcobacter spp. in the coastal environment of the Mediterranean sea. Appl. Environ. Microbiol. 2004, 70:1271-1276.
13. Figueras M.J., Alperi A., Guarro J., Martínez-Murcia A.J. Genotyping of isolates included in the description of a novel species should be mandatory. Int. J. Syst. Evol. Microbiol. 2006, 56:1183-1184.
14. Figueras M.J., Collado L., Guarro J. A new 16S rDNA-RFLP method for the discrimination of the accepted species of Arcobacter. Diagn. Microbiol. Infect. Dis. 2008, 62:11-15.
15. Ho H.T., Lipman L.J., Gaastra W. Arcobacter, what is known and unknown about a potential foodborne zoonotic agent. Vet. Microbiol. 2006, 115:1-13.
16. Houf K., De Zutter L., Van Hoof J., Vandamme P. Assessment of the genetic diversity among arcobacters isolated from poultry products by using two PCR-based typing methods. Appl. Environ. Microbiol. 2002, 68:2172-2178.
17. Houf K., On S., Coenye T., Debruyne L., De Smet S., Vandamme P. Arcobacter thereius sp. nov., isolated from pigs and ducks. Int. J. Syst. Evol. Microbiol. 2009, 59:2599-2604.
18. Houf K., On S.L., Coenye T., Mast J., Van Hoof J., Vandamme P. Arcobacter cibarius sp. nov., isolated from broiler carcasses. Int. J. Syst. Evol. Microbiol. 2005, 55:713-717.
19. Houf K., Tutenel A., De Zutter L., Van Hoof J., Vandamme P. Development of a multiplex PCR assay for the simultaneous detection and identification of Arcobacter butzleri, Arcobacter cryaerophilus and Arcobacter skirrowii. FEMS Microbiol. Lett. 2000, 193:89-94.
20. ICMSF Microorganisms in Foods: Microbiological Testing in Food Safety Management 2002, International Commission on Microbiological Specifications for Foods, Kluwer/Plenum, New York, p. 171.
21. Kim H.M., Hwang C.Y., Cho B.C. Arcobacter marinus sp. nov. Int. J. Syst. Evol. Microbiol. 2009, 60:531-536.
22. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
23. On S.L., Holmes B., Sackin M.J. A probability matrix for the identification of campylobacters, helicobacters and allied taxa. J. Appl Bacteriol. 1996, 81:425-432.
24. On S.L.W., Holmes B. Classification and identification of campylobacters, helicobacters and allied taxa by numerical analysis of phenotypic characters. Syst. Appl. Microbiol. 1995, 18:374-390.
25. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
26. Schleifer K. Classification of bacteria and archaea: past, present and future. Syst. Appl. Microbiol. 2009, 32:533-542.
27. Stackebrandt E., Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol. Today 2006, 33:152-155.
28. Stackebrandt E., Goebel B. A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 1994, 44:846-849.
29. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
30. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
31. Urdiain M., Lopez-Lopez A., Gonzalo C., Busse H.J., Langer S., Kampfer P., Rosselló-Mora R. Reclassification of Rhodobium marinum and Rhodobium pfennigii as Afifella marina gen. nov. comb. nov. and Afifella pfennigii comb. nov., a new genus of photoheterotrophic Alphaproteobacteria and emended descriptions of Rhodobium, Rhodobium orientis and Rhodobium gokarnense. Syst. Appl. Microbiol. 2008, 31:339-351.
32. Ursing J., Lior H., Owen R. Proposal of minimal standards for describing new species of the family Campylobactereacea. Int. J. Syst. Evol. Microbiol. 1994, 44:842-845.
33. Van Driessche E., Houf K., Van Hoof J., De Zutter L., Vandamme P. Isolation of Arcobacter species from animal feces. FEMS Microbiol. Lett. 2003, 229:243-248.
34. VP. Bergey's Manual of Systematic Bacteriology 2005, 1161-1165. Springer, New York. Second Edition. D.J. Brenner, N.P. Kreig, J.T. Staley, G.M. Garrity (Eds.).
35. Vandamme P., Falsen E., Rossau R., Hoste B., Segers P., Tytgat R., De Ley J. Revision of Campylobacter, Helicobacter, and Wolinella taxonomy: emendation of generic descriptions and proposal of Arcobacter gen. nov. Int. J. Syst. Bacteriol. 1991, 41:88-103.
36. Vandamme P., Vancanneyt M., Pot B., Mels L., Hoste B., Dewettinck L., Vlaes L., Van den Borre C., Higgins R., Hommez J., Kersters K., Butzler J.P., Goossens H. Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens. Int. J. Syst. Bacteriol. 1992, 42:344-356.
37. Wirsen C.O., Sievert S.M., Cavanaugh C.M., Molyneaux S.J., Ahmad A., Taylor L.T., DeLong E.F., Taylor C.D. Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur. Appl. Environ. Microbiol. 2002, 68:316-325.