Arcobacter cloacae sp. nov. and Arcobacter suis sp. nov., two new species isolated from food and sewage

Systematic and Applied Microbiology

Volumn 36, Issue 1, 2013, Pages 22-27

  Levican, Arturo ^a   Collado, Luis ^b   Figueras, María José ^a  

^a FACULTAT DE MEDICINA I CIÈNCIES DE LA SALUT   (Spain)

^b UNIVERSIDAD AUSTRAL DE CHILE   (Chile)

Author keywords

Arcobacter; Food; GyrA atpA rpoB gyrB hsp60; MALDI TOF; MLPA; Sewage

Indexed keywords

RNA 16S;

ALGORITHM; ARCOBACTER; ARCOBACTER CLOACAE; ARCOBACTER SUIS; ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATE; DNA DNA HYBRIDIZATION; FLAGELLUM; GENE SEQUENCE; HOUSEKEEPING GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; SEWAGE; TYPE STRAIN;

ARCOBACTER; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; DNA-DIRECTED RNA POLYMERASES; FOOD MICROBIOLOGY; MEAT; MOLECULAR SEQUENCE DATA; MULTILOCUS SEQUENCE TYPING; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RNA, RIBOSOMAL, 16S; SEAFOOD; SEWAGE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

ARCOBACTER;

EID: 84874333028     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2012.11.003     Document Type: Article

References (31)

1. Chun J., Lee J.H., Jung Y., Kim M., Kim S., Kim B.K., Lim Y.W. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 2007, 57:2259-2261.
2. Collado L., Cleenwerck I., Van Trappen S., De Vos P., Figueras M.J. Arcobacter mytili sp. nov., an indoxyl acetate-hydrolysis-negative bacterium isolated from mussels. Int. J. Syst. Evol. Microbiol. 2009, 59:1391-1396.
3. Collado L., Figueras M.J. Taxonomy, epidemiology and clinical relevance of the genus Arcobacter. Clin. Microbiol. Rev. 2011, 24:174-192.
4. Collado L., Guarro J., Figueras M.J. Prevalence of Arcobacter in meat and shellfish. J. Food Prot. 2009, 72:1102-1106.
5. Collado L., Levican A., Perez J., Figueras M.J. Arcobacter defluvii sp. nov., isolated from sewage. Int. J. Syst. Evol. Microbiol. 2011, 61:1895-1901.
6. De Smet S., Vandamme P., De Zutter L., On S.L., Douidah L., Houf K. Arcobacter trophiarum sp. nov. isolated from fattening pigs. Int. J. Syst. Evol. Microbiol. 2011, 63:356-361.
7. Donachie S.P., Bowman J.P., On S.L., Alam M. Arcobacter halophilus sp. nov., the first obligate halophile in the genus Arcobacter. Int. J. Syst. Evol. Microbiol. 2005, 55:1271-1277.
8. Douidah L., De Zutter L., Vandamme P., Houf K. Identification of five human and mammal associated Arcobacter species by a novel multiplex-PCR assay. J. Microbiol. Methods 2010, 80:281-286.
9. Figueras M.J., Beaz-Hidalgo R., Collado L., Martínez-Murcia A. Recommendations for a new bacterial species description based on analyses of the unrelated genera Aeromonas and Arcobacter. Bull. BISMiS 2011, 2:1-16.
10. Figueras M.J., Collado L., Guarro J. A new 16S rDNA-RFLP method for the discrimination of the accepted species of Arcobacter. Diagn. Microbiol. Infect. Dis. 2008, 62:11-15.
11. Figueras M.J., Collado L., Levican A., Perez J., Solsona M.J., Yustes C. Arcobacter molluscorum sp. nov., new species isolated from shellfish. Syst. Appl. Microbiol. 2011, 34:105-109.
12. Figueras, M.J., Levican, A., Collado, L. Updated 16S rDNA-RFLP method for the identification of all currently characterized Arcobacter spp. BMC Microbiol., submitted for publication.
13. Figueras M.J., Levican A., Collado L., Inza M.I., Yustes C. Arcobacter ellisii sp. nov., isolated from mussels. Syst. Appl. Microbiol. 2011, 34:414-418.
14. Houf K., On S.L., Coenye T., Mast J., Van Hoof J., Vandamme P. Arcobacter cibarius sp. nov., isolated from broiler carcasses. Int. J. Syst. Evol. Microbiol. 2005, 55:713-717.
15. Houf K., On S.L., Coenye T., Debruyne L., De Smet S., Vandamme P. Arcobacter thereius sp. nov., isolated from pigs and ducks. Int. J. Syst. Evol. Microbiol. 2009, 59:2599-2604.
16. Houf K., Tutenel A., De Zutter L., Van Hoof J., Vandamme P. Development of a multiplex PCR assay for the simultaneous detection and identification of Arcobacter butzleri, Arcobacter cryaerophilus and Arcobacter skirrowii. FEMS Microbiol. Lett. 2000, 193:89-94.
17. Kiehlbauch J.A., Brenner D.J., Nicholson M.A., Baker C.N. Campylobacter butzleri sp. nov. Isolated from humans and animals with diarrheal illness. J. Clin. Microbiol. 1991, 29:376-385.
18. Kim H.M., Hwang C.Y., Cho B.C. Arcobacter marinus sp. nov. Int. J. Syst. Evol. Microbiol. 2010, 60:531-536.
19. Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
20. Levican A., Collado L., Aguilar C., Yustes C., Diéguez A.L., Romalde J.L., Figueras M.J. Arcobacter bivalviorum sp. nov. and Arcobacter venerupis sp. nov., new species isolated from shellfish. Syst. Appl. Microbiol. 2012, 35:133-138.
21. McClung C.R., Patriquin D.G., Davis R.E. Campylobacter nitrofigilis sp. nov., a nitrogen fixing bacterium associated with roots of Spartina alterniflora Loisel. Int. J. Syst. Bacteriol. 1983, 33:605-612.
22. Neill S.D., Campbell J.N., O'Brien J.J., Weatherup S.T., Ellis W.A. Taxonomic position of Campylobacter cryaerophila sp. nov. Int. J. Syst. Bacteriol. 1985, 35:342-356.
23. On S.L.W., Holmes B. Classification and identification of Campylobacters, Helicobacters and allied taxa by numerical analysis of phenotypic characters. Syst. Appl. Microbiol. 1995, 18:374-390.
24. Stackebrandt E., Frederiksen W., Garrity G.M., Grimont P.A.D., Kämpfer P., Maiden M.C.J., Nesme X., Rosselló-Mora R., Swings J., Trüper H.J., Vauterin L., Ward A.C., Whitman W.B. Report of the ad hoc committee for the reevaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 2002, 52:1043-1047.
25. Stackebrandt E., Goebel B. A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 1994, 44:846-849.
26. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
27. Ursing J., Lior H., Owen R. Proposal of minimal standards for describing new species of the family Campylobacteraceae. Int. J. Syst. Evol. Microbiol. 1994, 44:842-845.
28. VP. Bergey's Manual of Systematic Bacteriology 2005, 1161-1165. Springer, New York. 2nd ed. D.J. Brenner, N.P. Kreig, J.T. Staley, G.M. Garrity (Eds.).
29. Vandamme P., Falsen E., Rossau R., Hoste B., Segers P., Tytgat R., De Ley J. Revision of Campylobacter, Helicobacter, and Wolinella taxonomy: emendation of generic descriptions and proposal of Arcobacter gen. nov. Int. J. Syst. Bacteriol. 1991, 41:88-103.
30. Vandamme P., Vancanneyt M., Pot B., Mels L., Hoste B., Dewettinck L., Vlaes L., Van den Borre C., Higgins R., Hommez J., Kersters K., Butzler J.P., Goossens H. Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens. Int. J. Syst. Bacteriol. 1992, 42:344-356.
31. Wesley I.V., Miller G.W. Arcobacter: an opportunistic humanfood-borne pathogen?. Emerging infections 9 2010, 185-211. ASM Press, Washington, DC. W.M. Scheld, M.L. Grayson, J.M. Hughes (Eds.).