Characterization of a HoxEFUYH type of [NiFe] hydrogenase from Allochromatium vinosum and some EPR and IR properties of the hydrogenase module

Journal of Biological Inorganic Chemistry

Volumn 12, Issue 1, 2007, Pages 62-78

  Long, Minnan ^a   Liu, Jingjing ^a   Chen, Zhifeng ^a   Bleijlevens, Boris ^b   Roseboom, Winfried ^b   Albracht, Simon P J ^b  

^a XIAMEN UNIVERSITY   (China)

^b UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

Allochromatium vinosum; NADH:ubiquinone oxidoreductase; Purification; Sequence; Soluble NiFe hydrogenase

Indexed keywords

DNA FRAGMENT; HOX PROTEIN; HOXE PROTEIN; HOXF PROTEIN; HOXH PROTEIN; HOXU PROTEIN; HOXY PROTEIN; HYDROGENASE; IRON SULFUR PROTEIN; NICKEL; NICKEL IRON HYDROGENASE;

ALLOCHROMATIUM; ALLOCHROMATIUM VINOSUM; ARTICLE; BINDING SITE; CELL FREE SYSTEM; CLOSTRIDIUM PASTEURIANUM; DNA DETERMINATION; ELECTRON SPIN RESONANCE; ENZYME ANALYSIS; ENZYME PURIFICATION; ENZYME STRUCTURE; ENZYME SUBUNIT; HYDROPHILICITY; INFRARED SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROTEOBACTERIA; THERMUS THERMOPHILUS;

AMINO ACID SEQUENCE; CHROMATIACEAE; DNA; ELECTRON SPIN RESONANCE SPECTROSCOPY; ENZYME ACTIVATION; HYDROGENASE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; SENSITIVITY AND SPECIFICITY; SPECTROPHOTOMETRY, INFRARED; TIME FACTORS;

ALLOCHROMATIUM VINOSUM; CLOSTRIDIUM PASTEURIANUM; NIA; THERMUS THERMOPHILUS;

EID: 33845355867     PISSN: 09498257     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00775-006-0162-1     Document Type: Article

References (107)

1. Adams MW (1990) Biochim Biophys Acta 1020:115-145
2. Peters JW, Lanzilotta WN, Lemon BJ, Seefeldt LC (1998) Science 282:1853-1858
3. Nicolet Y, Piras C, Legrand P, Hatchikian EC, Fontecilla-Camps JC (1999) Struct Fold Des 7:13-23
4. Van der Spek TM, Arendsen AF, Happe RP, Yun S, Bagley KA, Stufkens DJ, Hagen WR, Albracht SPJ (1996) Eur J Biochem 237:629-634
5. Pierik AJ, Hulstein M, Hagen WR, Albracht SPJ (1998) Eur J Biochem 258:572-578
6. Albracht SPJ, Roseboom W, Hatchikian EC (2006) J Biol Inorg Chem 11:88-101
7. Roseboom W, De Lacey AL, Fernandez VM, Hatchikian EC, Albracht SPJ (2006) J Biol Inorg Chem 11:102-118
8. Albracht SPJ (1994) Biochim Biophys Acta 1188:167-204
9. Volbeda A, Charon MH, Piras C, Hatchikian EC, Frey M, Fontecilla-Camps JC (1995) Nature 373:580-587
10. Volbeda A, Garcia E, Piras C, De Lacey AL, Fernandez VM, Hatchikian EC, Frey M, Fontecilla-Camps JC (1996) J Am Chem Soc 118:12989-12996
11. Bagley KA, Van Garderen CJ, Chen M, Duin EC, Albracht SPJ, Woodruff WH (1994) Biochemistry 33:9229-9236
12. Bagley KA, Duin EC, Roseboom W, Albracht SPJ, Woodruff WH (1995) Biochemistry 34:5527-5535
13. Happe RP, Roseboom W, Pierik AJ, Albracht SPJ, Bagley KA (1997) Nature 385:126
14. Pierik AJ, Roseboom W, Happe RP, Bagley KA, Albracht SPJ (1999) J Biol Chem 274:3331-3337
15. Lyon EJ, Shima S, Böcher R, Thauer RK, Grevels FW, Bill E, Roseboom W, Albracht SPJ (2004) J Am Chem Soc 126:14239-14248
16. Shima S, Lyon EJ, Thauer RK, Mienert B, Bill E (2005) J Am Chem Soc 127:10430-10435
17. Cammack R, Frey M, Robson R (2001) Hydrogen as a fuel. Learning from nature. Taylor & Francis, London
18. Vignais PM, Colbeau A (2004) Curr Issues Mol Biol 6:159-188
19. De Lacey AL, Hatchikian EC, Volbeda A, Frey M, Fontecilla-Camps JC, Fernandez VM (1997) J Am Chem Soc 119:7181-7189
20. Rousset M, Montet Y, Guigliarelli B, Forget N, Asso M, Bertrand P, Fontecilla-Camps JC, Hatchikian EC (1998) Proc Natl Acad Sci USA 95:11625-11630
21. Garcin E, Vernède X, Hatchikian EC, Volbeda A, Frey M, Fontecilla-Camps JC (1999) Struct Fold Des 7:557-566
22. Matias PM, Soares CM, Saraiva LM, Coelho R, Morais J, Le Gall J, Carrondo MA (2001) J Biol Inorg Chem 6:63-81
23. Fernandez VM, Hatchikian EC, Cammack R (1985) Biochim Biophys Acta 832:69-79
24. Fernandez VM, Rao KK, Fernandez MA, Cammack R (1986) Biochimie 68:43-48
25. Kurkin S, George SJ, Thorneley RNF, Albracht SPJ (2004) Biochemistry 43:6820-6831
26. Lamle SE, Albracht SPJ, Armstrong FA (2004) J Am Chem Soc 126:14899-14909
27. Lamle SE, Albracht SPJ, Armstrong FA (2005) J Am Chem Soc 127:6595-6604
28. Bleijlevens B, Faber BW, Albracht SPJ (2001) J Biol Inorg Chem 6:763-769
29. Volbeda A, Martin L, Cavazza C, Matho M, Faber BW, Roseboom W, Albracht SPJ, Garcin E, Rousset M, Fontecilla-Camps JC (2005) J Biol Inorg Chem 10:239-249
30. Ogata H, Hirota S, Nakahara A, Komori H, Shibata N, Kato T, Kano K, Higuchi Y (2005) Structure 13:1635-1642
31. Ackrell BA, Asato RN, Mower HF (1966) J Bacteriol 92:828-838
32. Rossmann R, Sauter M, Lottspeich F, Böck A (1994) Eur J Biochem 220:377-384
33. Andrews SC, Berks BC, McClay J, Ambler A, Quail MA, Golby P, Guest JR (1997) Microbiology 143:3633-3647
34. Robson R (2001) In: Cammack R, Frey M, Robson R (eds) Hydrogen as a fuel. Learning from nature. Taylor & Francis, London, pp 9-32
35. Buchanan BB, Bachofen R, Arnon DI (1964) Biochemistry 52:839-847
36. Weaver P, Tinker K, Valentine RC (1965) Biochem Biophys Res Commun 21:195-201
37. Buchanan BB, Bachofen R (1968) Biochim Biophys Acta 162:607-610
38. Feigenblum E, Krasna AI (1970) Biochim Biophys Acta 198:157-164
39. Llama MJ, Serra JL, Rao KK, Hall DO (1981) Eur J Biochem 114:89-96
40. George SJ, Kurkin S, Thorneley RNF, Albracht SPJ (2004) Biochemistry 43:6808-6819
41. Surerus KK, Chen M, van der Zwaan JW, Rusnak FM, Kolk M, Duin EC, Albracht SPJ, Münck E (1994) Biochemistry 33:4980-4993
42. Gu ZJ, Dong J, Allan CB, Choudhury SB, Franco R, Moura JJG, LeGall J, Przybyla AE, Roseboom W, Albracht SPJ, Axley MJ, Scott RA, Maroney MJ (1996) J Am Chem Soc 118:11155-11165
43. Davidson G, Choudhury SB, Gu Z, Bose K, Roseboom W, Albracht SPJ, Maroney MJ (2000) Biochemistry 39:7468-7479
44. Schmitz O, Boison G, Hilscher R, Hundeshagen B, Zimmer W, Lottspeich F, Bothe H (1995) Eur J Biochem 233:266-276
45. Boison G, Bothe H, Hansel A, Lindblad P (1999) FEMS Microbiol Lett 174:159-165
46. Schmitz O, Boison G, Salzmann H, Bothe H, Schutz K, Wang SH, Happe T (2002) Biochim Biophys Acta 1554:66-74
47. Tamagnini P, Axelsson R, Lindberg P, Oxelfelt F, Wunschiers R, Lindblad P (2002) Microbiol Mol Biol Rev 66:1-20
48. Schutz K, Happe T, Troshina O, Lindblad P, Leitao E, Oliveira P, Tamagnini P (2004) Planta 218:350-359
49. Rákhely G, Kovács AT, Maróti G, Fodor BD, Csanádi G, Latinovics D, Kovács KL (2004) Appl Environ Microbiol 70:722-728
50. Hinchliffe P, Sazanov LA (2005) Science 309:771-774
51. Sazanov LA, Hinchliffe P (2006) Science 311:1430-1436
52. Hinchliffe P, Carroll J, Sazanov LA (2006) Biochemistry 45:4413-4420
53. Van Heerikhuizen H, Albracht SPJ, Slater EC, van Rheenen PS (1981) Biochim Biophys Acta 657:26-39
54. Hendley DD (1955) J Bacteriol 70:625-634
55. Albracht SPJ, Kalkman ML, Slater EC (1983) Biochim Biophys Acta 1983:309-316
56. Kovács KL, Tigyi G, Alfonz H (1985) Prep Biochem 15:321-334
57. Coremans JMCC, van der Zwaan JW, Albracht SPJ (1992) Biochim Biophys Acta 1119:157-168
58. Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) J Biol Chem 193:265-275
59. Coremans JMCC, Van der Zwaan JW, Albracht SPJ (1989) Biochim Biophys Acta 997:256-267
60. Studier FW (1973) J Mol Biol 79:237-248
61. Laemmli UK (1970) Nature 227:680-685
62. Jacobson FS, Daniels L, Fox JA, Walsh CT, Orme-Johnson WH (1982) J Biol Chem 257:3385-3388
63. Adams MW, Hall DO (1979) Arch Biochem Biophys 195:288-299
64. Matsudaira P (1987) J Biol Chem 262:10035-10038
65. Sambrook J, Maniatis T, Fritsch EF (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
66. Happe RP, Roseboom W, Albracht SPJ (1999) Eur J Biochem 259:602-608
67. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Nucleic Acids Res 25:3389-3402
68. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) Nucleic Acids Res 25:4876-4882
69. Ohnishi T, Blum H, Galante YM, Hatefi Y (1981) J Biol Chem 256:9216-9220
70. Ragan CI, Galante YM, Hatefi Y, Ohnishi T (1982) Biochemistry 21:590-594
71. Ohnishi T, Ragan CI, Hatefi Y (1985) J Biol Chem 260:2782-2788
72. Pilkington SJ, Skehel JM, Gennis RB, Walker JE (1991) Biochemistry 30:2166-2175
73. Bottoms CA, Smith PE, Tanner JJ (2002) Protein Sci 11:2125-2137
74. Albracht SPJ, De Jong AMP (1997) Biochim Biophys Acta 1318:92-106
75. Arizmendi JM, Runswick MJ, Skehel JM, Walker JE (1992) FEBS Lett 301:237-242
76. Fearnley IM, Walker JE (1992) Biochim Biophys Acta 1140:105-134
77. Albracht SPJ, Hedderich R (2000) FEBS Lett 485:1-6
78. Van der Linden E, Faber BW, Bleijlevens B, Burgdorf T, Bernhard M, Friedrich B, Albracht SPJ (2004) Eur J Biochem 271:801-808
79. Van der Linden E, Burgdorf T, De Lacey AL, Buhrke T, Scholte M, Fernandez VM, Friedrich B, Albracht SPJ (2006) J Biol Inorg Chem 11:247-260
80. Albracht SPJ, Van der Linden E, Faber BW (2003) Biochim Biophys Acta 1557:41-49
81. Van Belzen R, Albracht SPJ (1989) Biochim Biophys Acta 974:311-320
82. Burgdorf T, Van der Linden E, Bernhard M, Yin QY, Back JW, Hartog AF, Muijsers AO, de Koster CG, Albracht SPJ, Friedrich B (2005) J Bacteriol 187:3122-3132
83. Montet Y, Amara P, Volbeda A, Vernede X, Hatchikian EC, Field MJ, Frey M, Fontecilla-Camps JC (1997) Nat Struct Biol 4:523-526
84. Higuchi Y, Yagi T, Yasuoka N (1997) Structure 5:1671-1680
85. Higuchi Y, Ogata H, Miki K, Yasuoka N, Yagi T (1999) Struct Fold Des 7:549-556
86. Ogata H, Mizoguchi Y, Mizuno N, Miki K, Adachi S, Yasuoka N, Yagi T, Yamauchi O, Hirota S, Higuchi Y (2002) J Am Chem Soc 124:11628-11635
87. Volbeda A, Montet Y, Vernède X, Hatchikian EC, Fontecilla-Camps JC (2002) Int J Hydrogen Energy 27:1449-1461
88. Strekas T, Antanaitis BC, Krasna AI (1980) Biochim Biophys Acta 616:1-9
89. Vänngård T (1972) In: Swartz HM, Bolton JR, Borg DC (eds) Biological applications of electron spin resonance. Wiley, New York, pp 411-447
90. Coremans JMCC, van Garderen CJ, Albracht SPJ (1992) Biochim Biophys Acta 1119:148-156
91. Duin EC (1996) PhD thesis, University of Amsterdam
92. Schneider K, Cammack R, Schlegel HG (1984) Eur J Biochem 142:75-84
93. Schneider K, Schlegel HG, Jochim K (1984) Eur J Biochem 138:533-541
94. Serebryakova LT, Medina M, Zorin NA, Gogotov IN, Cammack R (1996) FEBS Lett 383:79-82
95. Galante YM, Hatefi Y (1979) Arch Biochem Biophys 192:559-568
96. Kunkel A, Vorholt JA, Thauer RK, Hedderich R (1998) Eur J Biochem 252:467-476
97. Meuer J, Kuettner HC, Zhang JK, Hedderich R, Metcalf WW (2002) Proc Natl Acad Sci USA 99:5632-5637
98. Kurkin S, Meuer J, Koch J, Hedderich R, Albracht SPJ (2002) Eur J Biochem 269:6101-6111
99. Forzi L, Koch J, Guss AM, Radosevich CG, Metcalf WW, Hedderich R (2005) FEBS J 272:4741-4753
100. Orme-Johnson NR, Hansen RE, Beinert H (1974) J Biol Chem 249:1922-1927
101. Kyritsis P, Hatzfeld OM, Link TA, Moulis JM (1998) J Biol Chem 273:15404-15411
102. Kirby TW, Lancaster JR Jr, Fridovich I (1981) Arch Biochem Biophys 210:140-148
103. Renault JP, Verchère-Béaur C, Morgenstern-Badarau I, Yamakura F, Gerloch M (2000) Inorg Chem 39:2666-2675
104. Gratepanche S, Ménage S, Touati D, Wintjens R, Delplace P, Fontecave M, Masset A, Camus D, Dive D (2002) Mol Biochem Parasitol 120:237-246
105. Kerfeld CA, Yoshida S, Tran KT, Yeates TO, Cascio D, Bottin H, Berthomieu C, Sugiura M, Boussac A (2003) J Biol Inorg Chem 8:707-714
106. Albracht SPJ (2001) In: Cammack R, Frey M, Robson R (eds) Hydrogen as a fuel. Learning from nature. Taylor & Francis, London, pp 110-158
107. Bleijlevens B, van Broekhuizen FA, De Lacey AL, Roseboom W, Fernandez VM, Albracht SPJ (2004) J Biol Inorg Chem 9:743-752