-
1
-
-
80855127557
-
OmpA-like protein influences cell shape and adhesive activity of Tannerella forsythia
-
Abe, T., Murakami, Y., Nagano, K., Hasegawa, Y., Moriguchi, K., Ohno, N., etal. (2011) OmpA-like protein influences cell shape and adhesive activity of Tannerella forsythia. Mol Oral Microbiol 26: 374-387.
-
(2011)
Mol Oral Microbiol
, vol.26
, pp. 374-387
-
-
Abe, T.1
Murakami, Y.2
Nagano, K.3
Hasegawa, Y.4
Moriguchi, K.5
Ohno, N.6
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
80052299371
-
Catabolic and anabolic energy for chemolithoautotrophs in deep-sea hydrothermal systems hosted in different rock types
-
Amend, J.P., McCollom, T.M., Hentscher, M., and Bach, W. (2011) Catabolic and anabolic energy for chemolithoautotrophs in deep-sea hydrothermal systems hosted in different rock types. Geochim Cosmochim Acta 75: 5736-5748.
-
(2011)
Geochim Cosmochim Acta
, vol.75
, pp. 5736-5748
-
-
Amend, J.P.1
McCollom, T.M.2
Hentscher, M.3
Bach, W.4
-
4
-
-
80755187812
-
CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation
-
Bhaya, D., Davison, M., and Barrangou, R. (2011) CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation. Annu Rev Genet 45: 273-297.
-
(2011)
Annu Rev Genet
, vol.45
, pp. 273-297
-
-
Bhaya, D.1
Davison, M.2
Barrangou, R.3
-
5
-
-
78651109050
-
Systematic analysis of cyclic di-GMP signalling enzymes and their role in biofilm formation and virulence in Yersinia pestis
-
Bobrov, A.G., Kirillina, O., Ryjenkov, D.A., Waters, C.M., Price, P.A., Fetherston, J.D., etal. (2011) Systematic analysis of cyclic di-GMP signalling enzymes and their role in biofilm formation and virulence in Yersinia pestis. Mol Microbiol 79: 533-551.
-
(2011)
Mol Microbiol
, vol.79
, pp. 533-551
-
-
Bobrov, A.G.1
Kirillina, O.2
Ryjenkov, D.A.3
Waters, C.M.4
Price, P.A.5
Fetherston, J.D.6
-
6
-
-
78049241240
-
Order VII. Methylococcales ord. nov
-
Brenner, D.J., Krieg, N.R., Staley, J.R., and Garrity, G.M. (eds). New York, NY, USA: Springer Verlag
-
Bowman, J.P. (2005) Order VII. Methylococcales ord. nov. In Bergey's Manual of Systematic Bacteriology. Brenner, D.J., Krieg, N.R., Staley, J.R., and Garrity, G.M. (eds). New York, NY, USA: Springer Verlag, pp. 248-270.
-
(2005)
Bergey's Manual of Systematic Bacteriology
, pp. 248-270
-
-
Bowman, J.P.1
-
7
-
-
72649088719
-
Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm
-
Brazelton, W.J., and Baross, J.A. (2009) Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm. ISME J 3: 1420-1424.
-
(2009)
ISME J
, vol.3
, pp. 1420-1424
-
-
Brazelton, W.J.1
Baross, J.A.2
-
8
-
-
0035489758
-
Growth and phylogenetic properties of novel bacteria belonging to the epsilon subdivision of the Proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents
-
Campbell, B.J., Jeanthon, C., Kostka, J.E., Luther, G.W., and Cary, S.C. (2001) Growth and phylogenetic properties of novel bacteria belonging to the epsilon subdivision of the Proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents. Appl Environ Microbiol 67: 4566-4572.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 4566-4572
-
-
Campbell, B.J.1
Jeanthon, C.2
Kostka, J.E.3
Luther, G.W.4
Cary, S.C.5
-
9
-
-
33646827488
-
The versatile ε-proteobacteria: key players in sulphidic habitats
-
Campbell, B.J., Engel, A.S., Porter, M.L., and Takai, K. (2006) The versatile ε-proteobacteria: key players in sulphidic habitats. Nat Rev Microbiol 4: 458-468.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 458-468
-
-
Campbell, B.J.1
Engel, A.S.2
Porter, M.L.3
Takai, K.4
-
10
-
-
55749101939
-
A collective mechanism for phase variation in biofilms
-
Chia, N., Woese, C.R., and Goldenfeld, N. (2008) A collective mechanism for phase variation in biofilms. Proc Natl Acad Sci USA 105: 14597-14602.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 14597-14602
-
-
Chia, N.1
Woese, C.R.2
Goldenfeld, N.3
-
11
-
-
0033870152
-
Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17
-
Friedrich, C.G., Quentmeier, A., Bardischewsky, F., Rother, D., Kraft, R., Kostka, S., and Prinz, H. (2000) Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17. J Bacteriol 182: 4677-4687.
-
(2000)
J Bacteriol
, vol.182
, pp. 4677-4687
-
-
Friedrich, C.G.1
Quentmeier, A.2
Bardischewsky, F.3
Rother, D.4
Kraft, R.5
Kostka, S.6
Prinz, H.7
-
12
-
-
58149194210
-
Order V. Thiotrichales ord. nov
-
Brenner, D.J., Krieg, N.R., Staley, J.R., and Garrity, G.M. (eds). New York, NY, USA: Springer Verlag
-
Garrity, G.M., Bell, J.A., and Lilburn, T. (2005) Order V. Thiotrichales ord. nov. In Bergey's Manual of Systematic Bacteriology. Brenner, D.J., Krieg, N.R., Staley, J.R., and Garrity, G.M. (eds). New York, NY, USA: Springer Verlag, pp. 131-210.
-
(2005)
Bergey's Manual of Systematic Bacteriology
, pp. 131-210
-
-
Garrity, G.M.1
Bell, J.A.2
Lilburn, T.3
-
13
-
-
70349653431
-
Biochemistry and molecular biology of lithotrophic sulfur oxidation by taxonomically and ecologically diverse bacteria and archaea
-
Ghosh, W., and Dam, B. (2009) Biochemistry and molecular biology of lithotrophic sulfur oxidation by taxonomically and ecologically diverse bacteria and archaea. FEMS Microbiol Rev 33: 999-1043.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 999-1043
-
-
Ghosh, W.1
Dam, B.2
-
14
-
-
33744941078
-
The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes
-
Godde, J.S., and Bickerton, A. (2006) The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes. J Mol Evol 62: 718-729.
-
(2006)
J Mol Evol
, vol.62
, pp. 718-729
-
-
Godde, J.S.1
Bickerton, A.2
-
15
-
-
0346422460
-
Characterization of the menaquinone reduction site in the diheme cytochrome b membrane anchor of Wolinella succinogenes NiFe-hydrogenase
-
Gross, R., Pisa, R., Sänger, M., Lancaster, C.R.D., and Simon, J. (2004) Characterization of the menaquinone reduction site in the diheme cytochrome b membrane anchor of Wolinella succinogenes NiFe-hydrogenase. J Biol Chem 279: 274-281.
-
(2004)
J Biol Chem
, vol.279
, pp. 274-281
-
-
Gross, R.1
Pisa, R.2
Sänger, M.3
Lancaster, C.R.D.4
Simon, J.5
-
16
-
-
84856009886
-
Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones
-
Grote, J., Schott, T., Bruckner, C.G., Glöckner, F.O., Jost, G., Teeling, H., etal. (2012) Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones. Proc Natl Acad Sci USA 109: 506-510.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 506-510
-
-
Grote, J.1
Schott, T.2
Bruckner, C.G.3
Glöckner, F.O.4
Jost, G.5
Teeling, H.6
-
17
-
-
34248400310
-
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
-
Haft, D.H., Selengut, J., Mongodin, E.F., and Nelson, K.E. (2005) A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 1: 474-483.
-
(2005)
PLoS Comput Biol
, vol.1
, pp. 474-483
-
-
Haft, D.H.1
Selengut, J.2
Mongodin, E.F.3
Nelson, K.E.4
-
18
-
-
65549147805
-
Microbial co-habitation and lateral gene transfer: what transposases can tell us
-
Hooper, S., Mavromatis, K., and Kyrpides, N. (2009) Microbial co-habitation and lateral gene transfer: what transposases can tell us. Genome Biol 10: R45.
-
(2009)
Genome Biol
, vol.10
-
-
Hooper, S.1
Mavromatis, K.2
Kyrpides, N.3
-
19
-
-
31544463555
-
Flagella-mediated motility is required for biofilm formation by Erwinia carotovora subsp. carotovora
-
Hossain, M.M., and Tsuyumu, S. (2006) Flagella-mediated motility is required for biofilm formation by Erwinia carotovora subsp. carotovora. J Gen Plant Pathol 72: 34-39.
-
(2006)
J Gen Plant Pathol
, vol.72
, pp. 34-39
-
-
Hossain, M.M.1
Tsuyumu, S.2
-
20
-
-
77950637747
-
Involvement of motility and flagella in Bacillus cereus biofilm formation
-
Houry, A., Briandet, R., Aymerich, S., and Gohar, M. (2010) Involvement of motility and flagella in Bacillus cereus biofilm formation. Microbiology 156: 1009-1018.
-
(2010)
Microbiology
, vol.156
, pp. 1009-1018
-
-
Houry, A.1
Briandet, R.2
Aymerich, S.3
Gohar, M.4
-
21
-
-
0037375056
-
Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption
-
Huber, J.A., Butterfield, D.A., and Baross, J.A. (2003) Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption. FEMS Microbiol Ecol 43: 393-409.
-
(2003)
FEMS Microbiol Ecol
, vol.43
, pp. 393-409
-
-
Huber, J.A.1
Butterfield, D.A.2
Baross, J.A.3
-
22
-
-
35148888609
-
Microbial population structures in the deep marine biosphere
-
Huber, J.A., Mark Welch, D., Morrison, H.G., Huse, S.M., Neal, P.R., Butterfield, D.A., and Sogin, M.L. (2007) Microbial population structures in the deep marine biosphere. Science 318: 97-100.
-
(2007)
Science
, vol.318
, pp. 97-100
-
-
Huber, J.A.1
Mark Welch, D.2
Morrison, H.G.3
Huse, S.M.4
Neal, P.R.5
Butterfield, D.A.6
Sogin, M.L.7
-
23
-
-
77955237112
-
Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts
-
Huber, J.A., Cantin, H.V., Huse, S.M., Mark Welch, D.B., Sogin, M.L., and Butterfield, D.A. (2010) Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts. FEMS Microbiol Ecol 73: 538-549.
-
(2010)
FEMS Microbiol Ecol
, vol.73
, pp. 538-549
-
-
Huber, J.A.1
Cantin, H.V.2
Huse, S.M.3
Mark Welch, D.B.4
Sogin, M.L.5
Butterfield, D.A.6
-
24
-
-
80052549504
-
Integrative analysis of environmental sequences using MEGAN4
-
Huson, D.H., Mitra, S., Ruscheweyh, H.-J., Weber, N., and Schuster, S.C. (2011) Integrative analysis of environmental sequences using MEGAN4. Genome Res 21: 1552-1560.
-
(2011)
Genome Res
, vol.21
, pp. 1552-1560
-
-
Huson, D.H.1
Mitra, S.2
Ruscheweyh, H.-J.3
Weber, N.4
Schuster, S.C.5
-
25
-
-
0345328152
-
Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing ε-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough
-
Inagaki, F., Takai, K., Kobayashi, H., Nealson, K.H., and Horikoshi, K. (2003) Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing ε-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough. Int J Syst Evol Microbiol 53: 1801-1805.
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1801-1805
-
-
Inagaki, F.1
Takai, K.2
Kobayashi, H.3
Nealson, K.H.4
Horikoshi, K.5
-
26
-
-
5444247841
-
Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the ε-Proteobacteria isolated from Okinawa Trough hydrothermal sediments
-
Inagaki, F., Takai, K., Nealson, K.H., and Horikoshi, K. (2004) Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the ε-Proteobacteria isolated from Okinawa Trough hydrothermal sediments. Int J Syst Evol Microbiol 54: 1477-1482.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 1477-1482
-
-
Inagaki, F.1
Takai, K.2
Nealson, K.H.3
Horikoshi, K.4
-
27
-
-
0036267740
-
Identification of genes that are associated with DNA repeats in prokaryotes
-
Jansen, R., van Embden, J.D.A., Gaastra, W., and Schouls, L.M. (2002) Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 43: 1565-1575.
-
(2002)
Mol Microbiol
, vol.43
, pp. 1565-1575
-
-
Jansen, R.1
van Embden, J.D.A.2
Gaastra, W.3
Schouls, L.M.4
-
28
-
-
33845403359
-
Mechanisms of cyclic-di-GMP signaling in bacteria
-
Jenal, U., and Malone, J. (2006) Mechanisms of cyclic-di-GMP signaling in bacteria. Annu Rev Genet 40: 385-407.
-
(2006)
Annu Rev Genet
, vol.40
, pp. 385-407
-
-
Jenal, U.1
Malone, J.2
-
29
-
-
0036207009
-
The ecology of Cytophaga-Flavobacteria in aquatic environments
-
Kirchman, D.L. (2002) The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39: 91-100.
-
(2002)
FEMS Microbiol Ecol
, vol.39
, pp. 91-100
-
-
Kirchman, D.L.1
-
30
-
-
79961166996
-
Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA
-
Lanzén, A., Jørgensen, S.L., Bengtsson, M.M., Jonassen, I., Øvreås, L., and Urich, T. (2011) Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA. FEMS Microbiol Ecol 77: 577-589.
-
(2011)
FEMS Microbiol Ecol
, vol.77
, pp. 577-589
-
-
Lanzén, A.1
Jørgensen, S.L.2
Bengtsson, M.M.3
Jonassen, I.4
Øvreås, L.5
Urich, T.6
-
31
-
-
44449112421
-
Specificity in two-component signal transduction pathways
-
Laub, M.T., and Goulian, M. (2007) Specificity in two-component signal transduction pathways. Annu Rev Genet 41: 121-145.
-
(2007)
Annu Rev Genet
, vol.41
, pp. 121-145
-
-
Laub, M.T.1
Goulian, M.2
-
32
-
-
34548303826
-
A cyclic-di-GMP receptor required for bacterial exopolysaccharide production
-
Lee, V.T., Matewish, J.M., Kessler, J.L., Hyodo, M., Hayakawa, Y., and Lory, S. (2007) A cyclic-di-GMP receptor required for bacterial exopolysaccharide production. Mol Microbiol 65: 1474-1484.
-
(2007)
Mol Microbiol
, vol.65
, pp. 1474-1484
-
-
Lee, V.T.1
Matewish, J.M.2
Kessler, J.L.3
Hyodo, M.4
Hayakawa, Y.5
Lory, S.6
-
33
-
-
34250348370
-
Flagellar motility is critical for Listeria monocytogenes biofilm formation
-
Lemon, K.P., Higgins, D.E., and Kolter, R. (2007) Flagellar motility is critical for Listeria monocytogenes biofilm formation. J Bacteriol 189: 4418-4424.
-
(2007)
J Bacteriol
, vol.189
, pp. 4418-4424
-
-
Lemon, K.P.1
Higgins, D.E.2
Kolter, R.3
-
34
-
-
53549118607
-
The metagenomics RAST server: a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer, F., Paarmann, D., D'Souza, M., Olson, R., Glass, E.M., Kubal, M., etal. (2008) The metagenomics RAST server: a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
Kubal, M.6
-
35
-
-
0038820050
-
Gene transfer occurs with enhanced efficiency in biofilms and induces enhanced stabilisation of the biofilm structure
-
Molin, S., and Tolker-Nielsen, T. (2003) Gene transfer occurs with enhanced efficiency in biofilms and induces enhanced stabilisation of the biofilm structure. Curr Opin Biotechnol 14: 255-261.
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 255-261
-
-
Molin, S.1
Tolker-Nielsen, T.2
-
36
-
-
84876690996
-
Nonpathogenic Epsilonproteobacteria
-
Chichester, UK: John Wiley & Sons Ltd, [doi: 10.1002/9780470015902.a0021895]
-
Nakagawa, S., and Takaki, Y. (2009) Nonpathogenic Epsilonproteobacteria. In eLS. Chichester, UK: John Wiley & Sons Ltd. http://www.els.net [doi: 10.1002/9780470015902.a0021895].
-
(2009)
eLS
-
-
Nakagawa, S.1
Takaki, Y.2
-
37
-
-
25144503993
-
Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field
-
Nakagawa, S., Takai, K., Inagaki, F., Hirayama, H., Nunoura, T., Horikoshi, K., and Sako, Y. (2005) Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field. Environ Microbiol 7: 1619-1632.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1619-1632
-
-
Nakagawa, S.1
Takai, K.2
Inagaki, F.3
Hirayama, H.4
Nunoura, T.5
Horikoshi, K.6
Sako, Y.7
-
38
-
-
34547549547
-
Deep-sea vent ε-proteobacterial genomes provide insights into emergence of pathogens
-
Nakagawa, S., Takaki, Y., Shimamura, S., Reysenbach, A.-L., Takai, K., and Horikoshi, K. (2007) Deep-sea vent ε-proteobacterial genomes provide insights into emergence of pathogens. Proc Natl Acad Sci USA 104: 12146-12150.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12146-12150
-
-
Nakagawa, S.1
Takaki, Y.2
Shimamura, S.3
Reysenbach, A.-L.4
Takai, K.5
Horikoshi, K.6
-
39
-
-
54049114299
-
OmpA is an adhesion factor of Aeromonas veronii, an optimistic pathogen that habituates in carp intestinal tract
-
Namba, A., Mano, N., Takano, H., Beppu, T., Ueda, K., and Hirose, H. (2008) OmpA is an adhesion factor of Aeromonas veronii, an optimistic pathogen that habituates in carp intestinal tract. J Appl Microbiol 105: 1441-1451.
-
(2008)
J Appl Microbiol
, vol.105
, pp. 1441-1451
-
-
Namba, A.1
Mano, N.2
Takano, H.3
Beppu, T.4
Ueda, K.5
Hirose, H.6
-
40
-
-
70449122374
-
Individual hydrothermal vents at Axial Seamount harbor distinct subseafloor microbial communities
-
Opatkiewicz, A.D., Butterfield, D.A., and Baross, J.A. (2009) Individual hydrothermal vents at Axial Seamount harbor distinct subseafloor microbial communities. FEMS Microbiol Ecol 70: 413-424.
-
(2009)
FEMS Microbiol Ecol
, vol.70
, pp. 413-424
-
-
Opatkiewicz, A.D.1
Butterfield, D.A.2
Baross, J.A.3
-
41
-
-
78650051812
-
Discovery of a black smoker vent field and vent fauna at the Arctic mid-ocean Ridge
-
Pedersen, R.B., Rapp, H.T., Thorseth, I.H., Lilley, M.D., Barriga, F.J.A.S., Baumberger, T., etal. (2010) Discovery of a black smoker vent field and vent fauna at the Arctic mid-ocean Ridge. Nat Commun 1: 1-6.
-
(2010)
Nat Commun
, vol.1
, pp. 1-6
-
-
Pedersen, R.B.1
Rapp, H.T.2
Thorseth, I.H.3
Lilley, M.D.4
Barriga, F.J.A.S.5
Baumberger, T.6
-
42
-
-
70350646816
-
CRISPR elements in the Thermococcales: evidence for associated horizontal gene transfer in Pyrococcus furiosus
-
Portillo, M.C., and Gonzalez, J.M. (2009) CRISPR elements in the Thermococcales: evidence for associated horizontal gene transfer in Pyrococcus furiosus. J Appl Genet 50: 421-430.
-
(2009)
J Appl Genet
, vol.50
, pp. 421-430
-
-
Portillo, M.C.1
Gonzalez, J.M.2
-
43
-
-
77956628107
-
Transcription, processing and function of CRISPR cassettes in Escherichia coli
-
Pougach, K., Semenova, E., Bogdanova, E., Datsenko, K.A., Djordjevic, M., Wanner, B.L., and Severinov, K. (2010) Transcription, processing and function of CRISPR cassettes in Escherichia coli. Mol Microbiol 77: 1367-1379.
-
(2010)
Mol Microbiol
, vol.77
, pp. 1367-1379
-
-
Pougach, K.1
Semenova, E.2
Bogdanova, E.3
Datsenko, K.A.4
Djordjevic, M.5
Wanner, B.L.6
Severinov, K.7
-
44
-
-
0031754332
-
Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili
-
Pratt, L.A., and Kolter, R. (1998) Genetic analysis of Escherichia coli biofilm formation: roles of flagella, motility, chemotaxis and type I pili. Mol Microbiol 30: 285-293.
-
(1998)
Mol Microbiol
, vol.30
, pp. 285-293
-
-
Pratt, L.A.1
Kolter, R.2
-
45
-
-
0029670068
-
A high-affinity cbb3-type cytochrome oxidase terminates the symbiosis-specific respiratory chain of Bradyrhizobium japonicum
-
Preisig, O., Zufferey, R., Thöny-Meyer, L., Appleby, C.A., and Hennecke, H. (1996) A high-affinity cbb3-type cytochrome oxidase terminates the symbiosis-specific respiratory chain of Bradyrhizobium japonicum. J Bacteriol 178: 1532-1538.
-
(1996)
J Bacteriol
, vol.178
, pp. 1532-1538
-
-
Preisig, O.1
Zufferey, R.2
Thöny-Meyer, L.3
Appleby, C.A.4
Hennecke, H.5
-
46
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse, E., Quast, C., Knittel, K., Fuchs, B.M., Ludwig, W., Peplies, J., and Glöckner, F.O. (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
47
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
Quince, C., Lanzen, A., Davenport, R., and Turnbaugh, P. (2011) Removing noise from pyrosequenced amplicons. BMC Bioinformatics 12: 38.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzen, A.2
Davenport, R.3
Turnbaugh, P.4
-
48
-
-
80053648187
-
Bacterial sulfur cycling shapes microbial communities in surface sediments of an ultramafic hydrothermal vent field
-
Schauer, R., Røy, H., Augustin, N., Gennerich, H.-H., Peters, M., Wenzhoefer, F., etal. (2011) Bacterial sulfur cycling shapes microbial communities in surface sediments of an ultramafic hydrothermal vent field. Environ Microbiol 13: 2633-2648.
-
(2011)
Environ Microbiol
, vol.13
, pp. 2633-2648
-
-
Schauer, R.1
Røy, H.2
Augustin, N.3
Gennerich, H.-H.4
Peters, M.5
Wenzhoefer, F.6
-
49
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., etal. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
-
50
-
-
34249801803
-
Identification of a new OmpA-like protein in Neisseria gonorrhoeae involved in the binding to human epithelial cells and in vivo colonization
-
Serino, L., Nesta, B., Leuzzi, R., Fontana, M.R., Monaci, E., Mocca, B.T., etal. (2007) Identification of a new OmpA-like protein in Neisseria gonorrhoeae involved in the binding to human epithelial cells and in vivo colonization. Mol Microbiol 64: 1391-1403.
-
(2007)
Mol Microbiol
, vol.64
, pp. 1391-1403
-
-
Serino, L.1
Nesta, B.2
Leuzzi, R.3
Fontana, M.R.4
Monaci, E.5
Mocca, B.T.6
-
51
-
-
39649088960
-
Genome of the Epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans
-
Sievert, S.M., Scott, K.M., Klotz, M.G., Chain, P.S.G., Hauser, L.J., Hemp, J., etal. (2008) Genome of the Epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans. Appl Environ Microbiol 74: 1145-1156.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 1145-1156
-
-
Sievert, S.M.1
Scott, K.M.2
Klotz, M.G.3
Chain, P.S.G.4
Hauser, L.J.5
Hemp, J.6
-
52
-
-
4344688129
-
GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility
-
Simm, R., Morr, M., Kader, A., Nimtz, M., and Römling, U. (2004) GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility. Mol Microbiol 53: 1123-1134.
-
(2004)
Mol Microbiol
, vol.53
, pp. 1123-1134
-
-
Simm, R.1
Morr, M.2
Kader, A.3
Nimtz, M.4
Römling, U.5
-
53
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored 'rare biosphere'
-
Sogin, M.L., Morrison, H.G., Huber, J.A., Welch, D.M., Huse, S.M., Neal, P.R., etal. (2006) Microbial diversity in the deep sea and the underexplored 'rare biosphere'. Proc Natl Acad Sci USA 103: 12115-12120.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
-
54
-
-
77953988576
-
Analysis of a Borrelia burgdorferi phosphodiesterase demonstrates a role for cyclic-di-guanosine monophosphate in motility and virulence
-
Sultan, S.Z., Pitzer, J.E., Miller, M.R., and Motaleb, M.A. (2010) Analysis of a Borrelia burgdorferi phosphodiesterase demonstrates a role for cyclic-di-guanosine monophosphate in motility and virulence. Mol Microbiol 77: 128-142.
-
(2010)
Mol Microbiol
, vol.77
, pp. 128-142
-
-
Sultan, S.Z.1
Pitzer, J.E.2
Miller, M.R.3
Motaleb, M.A.4
-
55
-
-
33747889276
-
Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas
-
Takai, K., Suzuki, M., Nakagawa, S., Miyazaki, M., Suzuki, Y., Inagaki, F., and Horikoshi, K. (2006) Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans as Sulfurimonas denitrificans comb. nov. and emended description of the genus Sulfurimonas. Int J Syst Evol Microbiol 56: 1725-1733.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 1725-1733
-
-
Takai, K.1
Suzuki, M.2
Nakagawa, S.3
Miyazaki, M.4
Suzuki, Y.5
Inagaki, F.6
Horikoshi, K.7
-
56
-
-
3843069972
-
Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation
-
Tischler, A.D., and Camilli, A. (2004) Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation. Mol Microbiol 53: 857-869.
-
(2004)
Mol Microbiol
, vol.53
, pp. 857-869
-
-
Tischler, A.D.1
Camilli, A.2
-
57
-
-
0028885407
-
The influence of hydrothermal fluid composition and advection rates on black smoker chimney mineralogy: insights from modeling transport and reaction
-
Tivey, M.K. (1995) The influence of hydrothermal fluid composition and advection rates on black smoker chimney mineralogy: insights from modeling transport and reaction. Geochim Cosmochim Acta 59: 1933-1949.
-
(1995)
Geochim Cosmochim Acta
, vol.59
, pp. 1933-1949
-
-
Tivey, M.K.1
-
58
-
-
0025638293
-
Mineral precipitation in the walls of black smoker chimneys: a quantitative model of transport and chemical reaction
-
Tivey, M.K., and McDuff, R.E. (1990) Mineral precipitation in the walls of black smoker chimneys: a quantitative model of transport and chemical reaction. J Geophys Res 95: 12617-12637.
-
(1990)
J Geophys Res
, vol.95
, pp. 12617-12637
-
-
Tivey, M.K.1
McDuff, R.E.2
-
59
-
-
35748974830
-
Occurrence, classification, and biological function of hydrogenases: an overview
-
Vignais, P.M., and Billoud, B. (2007) Occurrence, classification, and biological function of hydrogenases: an overview. Chem Rev 107: 4206-4272.
-
(2007)
Chem Rev
, vol.107
, pp. 4206-4272
-
-
Vignais, P.M.1
Billoud, B.2
-
60
-
-
0034886919
-
Classification and phylogeny of hydrogenases
-
Vignais, P.M., Billoud, B., and Meyer, J. (2001) Classification and phylogeny of hydrogenases. FEMS Microbiol Rev 25: 455-501.
-
(2001)
FEMS Microbiol Rev
, vol.25
, pp. 455-501
-
-
Vignais, P.M.1
Billoud, B.2
Meyer, J.3
-
61
-
-
33644899969
-
Periodic extinctions of transposable elements in bacterial lineages: evidence from intragenomic variation in multiple genomes
-
Wagner, A. (2006) Periodic extinctions of transposable elements in bacterial lineages: evidence from intragenomic variation in multiple genomes. Mol Biol Evol 23: 723-733.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 723-733
-
-
Wagner, A.1
-
62
-
-
77953571641
-
Molecular characterization of inorganic sulfur-compound metabolism in the deep-sea epsilonproteobacterium Sulfurovum sp. NBC37-1
-
Yamamoto, M., Nakagawa, S., Shimamura, S., Takai, K., and Horikoshi, K. (2010) Molecular characterization of inorganic sulfur-compound metabolism in the deep-sea epsilonproteobacterium Sulfurovum sp. NBC37-1. Environ Microbiol 12: 1144-1153.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1144-1153
-
-
Yamamoto, M.1
Nakagawa, S.2
Shimamura, S.3
Takai, K.4
Horikoshi, K.5
-
63
-
-
0030884102
-
PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox
-
Zhulin, I.B., Taylor, B.L., and Dixon, R. (1997) PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 22: 331-333.
-
(1997)
Trends Biochem Sci
, vol.22
, pp. 331-333
-
-
Zhulin, I.B.1
Taylor, B.L.2
Dixon, R.3
|