Arcobacter bivalviorum sp. nov. and Arcobacter venerupis sp. nov., new species isolated from shellfish

Systematic and Applied Microbiology

Volumn 35, Issue 3, 2012, Pages 133-138

  Levican, Arturo ^a   Collado, Luis ^a,b   Aguilar, Carmen ^c   Yustes, Clara ^c   Diéguez, Ana L ^d   Romalde, Jesús L ^d   Figueras, Maria José ^a  

^a FACULTAT DE MEDICINA I CIÈNCIES DE LA SALUT   (Spain)

^b UNIVERSIDAD AUSTRAL DE CHILE   (Chile)

^c Laboratori de Salut Pública de Tarragona   (Spain)

^d UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

Author keywords

16S rRNA; Arcobacter; Gyrb, rpoB, hsp60; MALDI TOF MS; Shellfish

Indexed keywords

BACTERIAL DNA; DNA TOPOISOMERASE (ATP HYDROLYSING) B; HEAT SHOCK PROTEIN 60; RNA POLYMERASE BETA SUBUNIT;

ARCOBACTER; ARCOBACTER BIVALVIORUM; ARCOBACTER DEFLUVII; ARCOBACTER VENERUPIS; ARTICLE; BACTERIAL GENETICS; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM; BACTERIUM EXAMINATION; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTROLLED STUDY; GENE SEQUENCE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MUSSEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RNA GENE; SHELLFISH;

ARCOBACTER; CHAPERONIN 60; CLUSTER ANALYSIS; DNA GYRASE; DNA, BACTERIAL; DNA, RIBOSOMAL; DNA-DIRECTED RNA POLYMERASES; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SHELLFISH; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

ARCOBACTER; BIVALVIA; NEGIBACTERIA; VENERUPIS;

EID: 84858706297     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2012.01.002     Document Type: Article

References (32)

1. Chun J., Lee J.H., Jung Y., Kim M., Kim S., Kim B.K., Lim Y.W. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 2007, 57:2259-2261.
2. Collado L., Cleenwerck I., Van Trappen S., De Vos P., Figueras M.J. Arcobacter mytili sp. nov., an indoxyl acetate-hydrolysis-negative bacterium isolated from mussels. Int. J. Syst. Evol. Microbiol. 2009, 59:1391-1396.
3. Collado L., Figueras M.J. Taxonomy, epidemiology and clinical relevance of the genus Arcobacter. Clin. Microbiol. Rev. 2011, 24:174-192.
4. Collado L., Guarro J., Figueras M.J. Prevalence of Arcobacter in meat and shellfish. J. Food Prot. 2009, 72:1102-1106.
5. Collado L., Levican A., Perez J., Figueras M.J. Arcobacter defluvii sp. nov., isolated from sewage. Int. J. Syst. Evol. Microbiol. 2011, 61:1895-1901.
6. De Smet S., Vandamme P., De Zutter L., On S., Douidah L., Houf K. Arcobacter trophiarum sp. nov. isolated from fattening pigs. Int. J. Syst. Evol. Microbiol. 2011, 63:356-361.
7. Donachie S.P., Bowman J.P., On S.L., Alam M. Arcobacter halophilus sp. nov., the first obligate halophile in the genus Arcobacter. Int. J. Syst. Evol. Microbiol. 2005, 55:1271-1277.
8. Douidah L., De Zutter L., Vandamme P., Houf K. Identification of five human and mammal associated Arcobacter species by a novel multiplex-PCR assay. J. Microbiol. Methods 2010, 80:281-286.
9. Figueras M.J., Beaz-Hidalgo R., Collado L., Martínez- Murcia A. Recommendations for a new bacterial species description based on analyses of the unrelated genera Aeromonas and Arcobacter. Bull. BISMiS 2011, 2:1-16.
10. Figueras M.J., Collado L., Guarro J. A new 16S rDNA-RFLP method for the discrimination of the accepted species of Arcobacter. Diagn. Microbiol. Infect. Dis. 2008, 62:11-15.
11. Figueras M.J., Collado L., Levican A., Perez J., Solsona M.J., Yustes C. Arcobacter molluscorum sp. nov., new species isolated from shellfish. Syst. Appl. Microbiol. 2011, 34:105-109.
12. Figueras M.J., Levican A., Collado L., Inza M.I., Yustes C. Arcobacter ellisii sp. nov., isolated from mussels. Syst. Appl. Microbiol. 2011, 34:414-418.
13. Heylen K., Vanparys B., Wittebolle L., Verstraete W., Boon N., De Vos P. Cultivation of denitrifying bacteria: optimization of isolation conditions and diversity study. Appl. Environ. Microbiol. 2006, 72:2637-2643.
14. Ho H.T., Lipman L.J., Gaastra W. Arcobacter, what is known and unknown about a potential foodborne zoonotic agent!. Vet. Microbiol. 2006, 115:1-13.
15. Houf K., De Zutter L., Van Hoof J., Vandamme P. Assessment of the genetic diversity among arcobacters isolated from poultry products by using two PCR-based typing methods. Appl. Environ. Microbiol. 2002, 68:2172-2178.
16. Houf K., On S.L., Coenye T., Mast J., Van Hoof J., Vandamme P. Arcobacter cibarius sp. nov., isolated from broiler carcasses. Int. J. Syst. Evol. Microbiol. 2005, 55:713-717.
17. Houf K., On S., Coenye T., Debruyne L., De Smet S., Vandamme P. Arcobacter thereius sp. nov., isolated from pigs and ducks. Int. J. Syst. Evol. Microbiol. 2009, 59:2599-2604.
18. Houf K., Tutenel A., De Zutter L., Van Hoof J., Vandamme P. Development of a multiplex PCR assay for the simultaneous detection and identification of Arcobacter butzleri, Arcobacter cryaerophilus and Arcobacter skirrowii. FEMS Microbiol. Lett. 2000, 193:89-94.
19. Kiehlbauch J.A., Brenner D.J., Nicholson M.A., Baker C.N. Campylobacter butzleri sp. nov. isolated from humans and animals with diarrheal illness. J. Clin. Microbiol. 1991, 29:376-385.
20. Kim H.M., Hwang C.Y., Cho B.C. Arcobacter marinus sp. nov. Int. J. Syst. Evol. Microbiol. 2010, 60:531-536.
21. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
22. Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
23. McClung C.R., Patriquin D.G., Davis R.E. Campylobacter nitrofigilis sp. nov., a nitrogen fixing bacterium associated with roots of Spartina alterniflora Loisel. Int. J. Syst. Bacteriol. 1983, 33:605-612.
24. Neill S.D., Campbell J.N., O'Brien J.J., Weatherup S.T., Ellis W.A. Taxonomic position of Campylobacter cryaerophila sp. nov. Int. J. Syst. Bacteriol. 1985, 35:342-356.
25. On S.L., Holmes B., Sackin M.J. A probability matrix for the identification of campylobacters, helicobacters and allied taxa. J. Appl. Bacteriol. 1996, 81:425-432.
26. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
27. Stackebrandt E., Goebel B.M. A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 1994, 44:846-849.
28. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood. Evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
29. Ursing J., Lior H., Owen R. Proposal of minimal standars for describing new species of the family Campylobactereaceae. Int. J. Syst. Evol. Microbiol. 1994, 44:842-845.
30. Vandamme P., Dewhirst F.E., Paster B.J., On S.L.W. Genus II. Arcobacter Vandamme, Falsen, Rossau, Segers, Tytgat and De Ley 1991a, 99VP. Bergey's Manual of Systematic Bacteriology 2005, 1161-1165. Springer, New York. second ed. D.J. Brenner, N.P. Kreig, J.T. Staley, G.M. Garrity (Eds.).
31. Vandamme P., Falsen E., Rossau R., Hoste B., Segers P., Tytgat R., De Ley J. Revision of Campylobacter, Helicobacter, and Wolinella taxonomy: emendation of generic descriptions and proposal of Arcobacter gen. nov. Int. J. Syst. Bacteriol. 1991, 41:88-103.
32. Vandamme P., Vancanneyt M., Pot B., other authors Polyphasic taxonomic study of the emended genus Arcobacter with Arcobacter butzleri comb. nov. and Arcobacter skirrowii sp. nov., an aerotolerant bacterium isolated from veterinary specimens. Int. J. Syst. Bacteriol. 1992, 42:344-356.