-
1
-
-
67349214645
-
The global stock of domesticated honey bees is growing slower than agricultural demand for pollination
-
Aizen, M.A., and Harder, L.D. (2009) The global stock of domesticated honey bees is growing slower than agricultural demand for pollination. Curr Biol 19: 915-918.
-
(2009)
Curr Biol
, vol.19
, pp. 915-918
-
-
Aizen, M.A.1
Harder, L.D.2
-
2
-
-
1342309210
-
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
-
Altekar, G., Dwarkadas, S., Huelsenbeck, J.P., and Ronquist, F. (2004) Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20: 407-415.
-
(2004)
Bioinformatics
, vol.20
, pp. 407-415
-
-
Altekar, G.1
Dwarkadas, S.2
Huelsenbeck, J.P.3
Ronquist, F.4
-
3
-
-
84859948582
-
The essentials of computational molecular evolution
-
Aris-Brosou, S., and Rodrigue, N. (2012) The essentials of computational molecular evolution. Methods Mol Biol 855: 111-152.
-
(2012)
Methods Mol Biol
, vol.855
, pp. 111-152
-
-
Aris-Brosou, S.1
Rodrigue, N.2
-
4
-
-
85004091898
-
Genome sequence of the microsporidian species Nematocida sp1 strain ERTm6 (ATCC PRA-372)
-
Bakowski, M.A., Priest, M., Young, S., Cuomo, C.A., and Troemel, E.R. (2014) Genome sequence of the microsporidian species Nematocida sp1 strain ERTm6 (ATCC PRA-372). Genome Announc 2: e00905-00914.
-
(2014)
Genome Announc
, vol.2
, pp. e00905-e00914
-
-
Bakowski, M.A.1
Priest, M.2
Young, S.3
Cuomo, C.A.4
Troemel, E.R.5
-
5
-
-
84860771820
-
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
-
Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., etal. (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19: 455-477.
-
(2012)
J Comput Biol
, vol.19
, pp. 455-477
-
-
Bankevich, A.1
Nurk, S.2
Antipov, D.3
Gurevich, A.A.4
Dvorkin, M.5
Kulikov, A.S.6
-
6
-
-
0024638817
-
Development of Edhazardia aedis (Kudo, 1930) n. g., n. comb. (Microsporida: Amblyosporidae) in the mosquito Aedes aegypti (L.) (Diptera: Culicidae)
-
Becnel, J.J., Sprague, V., Fukuda, T., and Hazard, E.I. (1989) Development of Edhazardia aedis (Kudo, 1930) n. g., n. comb. (Microsporida: Amblyosporidae) in the mosquito Aedes aegypti (L.) (Diptera: Culicidae). J Protozool 36: 119-130.
-
(1989)
J Protozool
, vol.36
, pp. 119-130
-
-
Becnel, J.J.1
Sprague, V.2
Fukuda, T.3
Hazard, E.I.4
-
7
-
-
84923510798
-
A case report of Nosema ceranae infection in honey bees in Minnesota, USA
-
Bekele, A.Z., Mor, S.K., Phelps, N.B., Goyal, S.M., and Armien, A.G. (2015) A case report of Nosema ceranae infection in honey bees in Minnesota, USA. Vet Q 35: 48-50.
-
(2015)
Vet Q
, vol.35
, pp. 48-50
-
-
Bekele, A.Z.1
Mor, S.K.2
Phelps, N.B.3
Goyal, S.M.4
Armien, A.G.5
-
8
-
-
0035139680
-
Genome ploidy in different stages of the Giardia lamblia life cycle
-
Bernander, R., Palm, J.E., and Svard, S.G. (2001) Genome ploidy in different stages of the Giardia lamblia life cycle. Cell Microbiol 3: 55-62.
-
(2001)
Cell Microbiol
, vol.3
, pp. 55-62
-
-
Bernander, R.1
Palm, J.E.2
Svard, S.G.3
-
9
-
-
84863400517
-
Further evidence of an oriental origin for Nosema ceranae (Microsporidia: Nosematidae)
-
Botias, C., Anderson, D.L., Meana, A., Garrido-Bailon, E., Martin-Hernandez, R., and Higes, M. (2012) Further evidence of an oriental origin for Nosema ceranae (Microsporidia: Nosematidae). J Invertebr Pathol 110: 108-113.
-
(2012)
J Invertebr Pathol
, vol.110
, pp. 108-113
-
-
Botias, C.1
Anderson, D.L.2
Meana, A.3
Garrido-Bailon, E.4
Martin-Hernandez, R.5
Higes, M.6
-
10
-
-
66649105285
-
Evolution of pathogenicity and sexual reproduction in eight Candida genomes
-
Butler, G., Rasmussen, M.D., Lin, M.F., Santos, M.A., Sakthikumar, S., Munro, C.A., etal. (2009) Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459: 657-662.
-
(2009)
Nature
, vol.459
, pp. 657-662
-
-
Butler, G.1
Rasmussen, M.D.2
Lin, M.F.3
Santos, M.A.4
Sakthikumar, S.5
Munro, C.A.6
-
11
-
-
0023808424
-
Nuclear division and chromosome cycle in microsporidia
-
Canning, E.U. (1988) Nuclear division and chromosome cycle in microsporidia. Biosystems 21: 333-340.
-
(1988)
Biosystems
, vol.21
, pp. 333-340
-
-
Canning, E.U.1
-
12
-
-
84907444515
-
Holistic screening of collapsing honey bee colonies in Spain: a case study
-
Cepero, A., Ravoet, J., Gomez-Moracho, T., Bernal, J.L., Del Nozal, M.J., Bartolome, C., etal. (2014) Holistic screening of collapsing honey bee colonies in Spain: a case study. BMC Res Notes 7: 649.
-
(2014)
BMC Res Notes
, vol.7
, pp. 649
-
-
Cepero, A.1
Ravoet, J.2
Gomez-Moracho, T.3
Bernal, J.L.4
Del Nozal, M.J.5
Bartolome, C.6
-
13
-
-
84879826379
-
Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions
-
Chen, Y., Pettis, J.S., Zhao, Y., Liu, X., Tallon, L.J., Sadzewicz, L.D., etal. (2013) Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions. BMC Genomics 14: 451.
-
(2013)
BMC Genomics
, vol.14
, pp. 451
-
-
Chen, Y.1
Pettis, J.S.2
Zhao, Y.3
Liu, X.4
Tallon, L.J.5
Sadzewicz, L.D.6
-
14
-
-
3042615882
-
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
-
Chevreux, B., Pfisterer, T., Drescher, B., Driesel, A.J., Muller, W.E., Wetter, T., and Suhai, S. (2004) Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res 14: 1147-1159.
-
(2004)
Genome Res
, vol.14
, pp. 1147-1159
-
-
Chevreux, B.1
Pfisterer, T.2
Drescher, B.3
Driesel, A.J.4
Muller, W.E.5
Wetter, T.6
Suhai, S.7
-
15
-
-
84891349005
-
Informed and automated k-mer size selection for genome assembly
-
Chikhi, R., and Medvedev, P. (2014) Informed and automated k-mer size selection for genome assembly. Bioinformatics 30: 31-37.
-
(2014)
Bioinformatics
, vol.30
, pp. 31-37
-
-
Chikhi, R.1
Medvedev, P.2
-
16
-
-
24644503098
-
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
-
Conesa, A., Gotz, S., Garcia-Gomez, J.M., Terol, J., Talon, M., and Robles, M. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
-
(2005)
Bioinformatics
, vol.21
, pp. 3674-3676
-
-
Conesa, A.1
Gotz, S.2
Garcia-Gomez, J.M.3
Terol, J.4
Talon, M.5
Robles, M.6
-
17
-
-
67650930861
-
Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees
-
Cornman, R.S., Chen, Y.P., Schatz, M.C., Street, C., Zhao, Y., Desany, B., etal. (2009) Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees. PLoS Pathog 5: e1000466.
-
(2009)
PLoS Pathog
, vol.5
, pp. e1000466
-
-
Cornman, R.S.1
Chen, Y.P.2
Schatz, M.C.3
Street, C.4
Zhao, Y.5
Desany, B.6
-
18
-
-
35348853758
-
A metagenomic survey of microbes in honey bee colony collapse disorder
-
Cox-Foster, D.L., Conlan, S., Holmes, E.C., Palacios, G., Evans, J.D., Moran, N.A., etal. (2007) A metagenomic survey of microbes in honey bee colony collapse disorder. Science 318: 283-287.
-
(2007)
Science
, vol.318
, pp. 283-287
-
-
Cox-Foster, D.L.1
Conlan, S.2
Holmes, E.C.3
Palacios, G.4
Evans, J.D.5
Moran, N.A.6
-
19
-
-
84869426527
-
Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth
-
Cuomo, C.A., Desjardins, C.A., Bakowski, M.A., Goldberg, J., Ma, A.T., Becnel, J.J., etal. (2012) Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth. Genome Res 22: 2478-2488.
-
(2012)
Genome Res
, vol.22
, pp. 2478-2488
-
-
Cuomo, C.A.1
Desjardins, C.A.2
Bakowski, M.A.3
Goldberg, J.4
Ma, A.T.5
Becnel, J.J.6
-
20
-
-
84863116531
-
Predictive markers of honey bee colony collapse
-
Dainat, B., Evans, J.D., Chen, Y.P., Gauthier, L., and Neumann, P. (2012) Predictive markers of honey bee colony collapse. PLoS ONE 7: e32151.
-
(2012)
PLoS ONE
, vol.7
, pp. e32151
-
-
Dainat, B.1
Evans, J.D.2
Chen, Y.P.3
Gauthier, L.4
Neumann, P.5
-
21
-
-
79960405019
-
The variant call format and VCFtools
-
Danecek, P., Auton, A., Abecasis, G., Albers, C.A., Banks, E., DePristo, M.A., etal. (2011) The variant call format and VCFtools. Bioinformatics 27: 2156-2158.
-
(2011)
Bioinformatics
, vol.27
, pp. 2156-2158
-
-
Danecek, P.1
Auton, A.2
Abecasis, G.3
Albers, C.A.4
Banks, E.5
DePristo, M.A.6
-
22
-
-
68149129593
-
Genetic characterization of commercial honey bee (Hymenoptera: Apidae) populations in the United States by using mitochondrial and microsatellite markers
-
Delaney, D.A., Meixner, M.D., Schiff, N.M., and Sheppard, W.S. (2009) Genetic characterization of commercial honey bee (Hymenoptera: Apidae) populations in the United States by using mitochondrial and microsatellite markers. Ann Entomol Soc Am 102: 666-673.
-
(2009)
Ann Entomol Soc Am
, vol.102
, pp. 666-673
-
-
Delaney, D.A.1
Meixner, M.D.2
Schiff, N.M.3
Sheppard, W.S.4
-
23
-
-
80052511877
-
Microsporidiosis: not just in AIDS patients
-
Didier, E.S., and Weiss, L.M. (2011) Microsporidiosis: not just in AIDS patients. Curr Opin Infect Dis 24: 490-495.
-
(2011)
Curr Opin Infect Dis
, vol.24
, pp. 490-495
-
-
Didier, E.S.1
Weiss, L.M.2
-
24
-
-
84884668080
-
Chromosomal copy number variation, selection and uneven rates of recombination reveal cryptic genome diversity linked to pathogenicity
-
Farrer, R.A., Henk, D.A., Garner, T.W., Balloux, F., Woodhams, D.C., and Fisher, M.C. (2013) Chromosomal copy number variation, selection and uneven rates of recombination reveal cryptic genome diversity linked to pathogenicity. PLoS Genet 9: e1003703.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003703
-
-
Farrer, R.A.1
Henk, D.A.2
Garner, T.W.3
Balloux, F.4
Woodhams, D.C.5
Fisher, M.C.6
-
25
-
-
84869059015
-
LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data
-
Feder, A.F., Petrov, D.A., and Bergland, A.O. (2012) LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data. PLoS ONE 7: e48588.
-
(2012)
PLoS ONE
, vol.7
, pp. e48588
-
-
Feder, A.F.1
Petrov, D.A.2
Bergland, A.O.3
-
26
-
-
84921846989
-
A comparison of next generation sequencing technologies for transcriptome assembly and utility for RNA-Seq in a non-model bird
-
Finseth, F.R., and Harrison, R.G. (2014) A comparison of next generation sequencing technologies for transcriptome assembly and utility for RNA-Seq in a non-model bird. PLoS ONE 9: e108550.
-
(2014)
PLoS ONE
, vol.9
, pp. e108550
-
-
Finseth, F.R.1
Harrison, R.G.2
-
27
-
-
0029822555
-
Nosema ceranae n sp (Microspora, Nosematidae), morphological and molecular characterization of a microsporidian parasite of the Asian honey bee Apis cerana (Hymenoptera, Apidae)
-
Fries, I., Feng, F., da Silva, A., Slemenda, S.B., and Pieniazek, N.J. (1996) Nosema ceranae n sp (Microspora, Nosematidae), morphological and molecular characterization of a microsporidian parasite of the Asian honey bee Apis cerana (Hymenoptera, Apidae). Eur J Protistol 32: 356-365.
-
(1996)
Eur J Protistol
, vol.32
, pp. 356-365
-
-
Fries, I.1
Feng, F.2
da Silva, A.3
Slemenda, S.B.4
Pieniazek, N.J.5
-
28
-
-
84926307100
-
Evidence for weak genetic recombination at the PTP2 locus of Nosema ceranae
-
Gomez-Moracho, T., Bartolome, C., Martin-Hernandez, R., Higes, M., and Maside, X. (2014a) Evidence for weak genetic recombination at the PTP2 locus of Nosema ceranae. Environ Microbiol 17: 1300-1309.
-
(2014)
Environ Microbiol
, vol.17
, pp. 1300-1309
-
-
Gomez-Moracho, T.1
Bartolome, C.2
Martin-Hernandez, R.3
Higes, M.4
Maside, X.5
-
29
-
-
84922350492
-
High levels of genetic diversity in Nosema ceranae within Apis mellifera colonies
-
Gomez-Moracho, T., Maside, X., Martin-Hernandez, R., Higes, M., and Bartolome, C. (2014b) High levels of genetic diversity in Nosema ceranae within Apis mellifera colonies. Parasitology 141: 475-481.
-
(2014)
Parasitology
, vol.141
, pp. 475-481
-
-
Gomez-Moracho, T.1
Maside, X.2
Martin-Hernandez, R.3
Higes, M.4
Bartolome, C.5
-
30
-
-
84922371091
-
Recent worldwide expansion of Nosema ceranae (Microsporidia) in Apis mellifera populations inferred from multilocus patterns of genetic variation
-
Gomez-Moracho, T., Bartolome, C., Bello, X., Martin-Hernandez, R., Higes, M., and Maside, X. (2015) Recent worldwide expansion of Nosema ceranae (Microsporidia) in Apis mellifera populations inferred from multilocus patterns of genetic variation. Infect Genet Evol 31: 87-94.
-
(2015)
Infect Genet Evol
, vol.31
, pp. 87-94
-
-
Gomez-Moracho, T.1
Bartolome, C.2
Bello, X.3
Martin-Hernandez, R.4
Higes, M.5
Maside, X.6
-
31
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W., and Gascuel, O. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
32
-
-
77249086587
-
Bayesian inference of species trees from multilocus data
-
Heled, J., and Drummond, A.J. (2010) Bayesian inference of species trees from multilocus data. Mol Biol Evol 27: 570-580.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 570-580
-
-
Heled, J.1
Drummond, A.J.2
-
33
-
-
33748664836
-
Nosema ceranae, a new microsporidian parasite in honeybees in Europe
-
Higes, M., Martin, R., and Meana, A. (2006) Nosema ceranae, a new microsporidian parasite in honeybees in Europe. J Invertebr Pathol 92: 93-95.
-
(2006)
J Invertebr Pathol
, vol.92
, pp. 93-95
-
-
Higes, M.1
Martin, R.2
Meana, A.3
-
34
-
-
33846931395
-
Experimental infection of Apis mellifera honeybees with Nosema ceranae (Microsporidia)
-
Higes, M., Garcia-Palencia, P., Martin-Hernandez, R., and Meana, A. (2007) Experimental infection of Apis mellifera honeybees with Nosema ceranae (Microsporidia). J Invertebr Pathol 94: 211-217.
-
(2007)
J Invertebr Pathol
, vol.94
, pp. 211-217
-
-
Higes, M.1
Garcia-Palencia, P.2
Martin-Hernandez, R.3
Meana, A.4
-
35
-
-
51649119280
-
How natural infection by Nosema ceranae causes honeybee colony collapse
-
Higes, M., Martín-Hernández, R., Botías, C., Bailón, E.G., González-Porto, A.V., Barrios, L., etal. (2008) How natural infection by Nosema ceranae causes honeybee colony collapse. Environ Microbiol 10: 2659-2669.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2659-2669
-
-
Higes, M.1
Martín-Hernández, R.2
Botías, C.3
Bailón, E.G.4
González-Porto, A.V.5
Barrios, L.6
-
36
-
-
84875980819
-
Nosema ceranae escapes fumagillin control in honey bees
-
Huang, W.F., Solter, L.F., Yau, P.M., and Imai, B.S. (2013) Nosema ceranae escapes fumagillin control in honey bees. PLoS Pathog 9: e1003185.
-
(2013)
PLoS Pathog
, vol.9
, pp. e1003185
-
-
Huang, W.F.1
Solter, L.F.2
Yau, P.M.3
Imai, B.S.4
-
37
-
-
84919923013
-
Infectivity and virulence of Nosema ceranae and Nosema apis in commercially available North American honey bees
-
Huang, W.F., Solter, L., Aronstein, K., and Huang, Z. (2015) Infectivity and virulence of Nosema ceranae and Nosema apis in commercially available North American honey bees. J Invertebr Pathol 124: 107-113.
-
(2015)
J Invertebr Pathol
, vol.124
, pp. 107-113
-
-
Huang, W.F.1
Solter, L.2
Aronstein, K.3
Huang, Z.4
-
38
-
-
34247355430
-
Multiple losses of sex within a single genus of Microsporidia
-
Ironside, J.E. (2007) Multiple losses of sex within a single genus of Microsporidia. BMC Evol Biol 7: 48.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 48
-
-
Ironside, J.E.1
-
39
-
-
84882621521
-
Shared signatures of parasitism and phylogenomics unite Cryptomycota and microsporidia
-
James, T.Y., Pelin, A., Bonen, L., Ahrendt, S., Sain, D., Corradi, N., and Stajich, J.E. (2013) Shared signatures of parasitism and phylogenomics unite Cryptomycota and microsporidia. Curr Biol 23: 1548-1553.
-
(2013)
Curr Biol
, vol.23
, pp. 1548-1553
-
-
James, T.Y.1
Pelin, A.2
Bonen, L.3
Ahrendt, S.4
Sain, D.5
Corradi, N.6
Stajich, J.E.7
-
40
-
-
0032436565
-
Endangered mutualisms: the conservation of plant-pollinator interactions
-
Kearns, C.A., Inouye, D.W., and Waser, N.M. (1998) Endangered mutualisms: the conservation of plant-pollinator interactions. Annu Rev Ecol Syst 29: 83-112.
-
(1998)
Annu Rev Ecol Syst
, vol.29
, pp. 83-112
-
-
Kearns, C.A.1
Inouye, D.W.2
Waser, N.M.3
-
41
-
-
34547872335
-
Widespread dispersal of the microsporidian Nosema ceranae, an emergent pathogen of the western honey bee, Apis mellifera
-
Klee, J., Besana, A.M., Genersch, E., Gisder, S., Nanetti, A., Tam, D.Q., etal. (2007) Widespread dispersal of the microsporidian Nosema ceranae, an emergent pathogen of the western honey bee, Apis mellifera. J Invertebr Pathol 96: 1-10.
-
(2007)
J Invertebr Pathol
, vol.96
, pp. 1-10
-
-
Klee, J.1
Besana, A.M.2
Genersch, E.3
Gisder, S.4
Nanetti, A.5
Tam, D.Q.6
-
42
-
-
79251557454
-
PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals
-
Kofler, R., Orozco-terWengel, P., De Maio, N., Pandey, R.V., Nolte, V., Futschik, A., etal. (2011) PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals. PLoS ONE 6: e15925.
-
(2011)
PLoS ONE
, vol.6
, pp. e15925
-
-
Kofler, R.1
Orozco-terWengel, P.2
De Maio, N.3
Pandey, R.V.4
Nolte, V.5
Futschik, A.6
-
43
-
-
63449132961
-
Mitotic recombination: why? when? how? where?
-
LaFave, M.C., and Sekelsky, J. (2009) Mitotic recombination: why? when? how? where? PLoS Genet 5: e1000411.
-
(2009)
PLoS Genet
, vol.5
, pp. e1000411
-
-
LaFave, M.C.1
Sekelsky, J.2
-
44
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H., and Durbin, R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
45
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., etal. (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
46
-
-
84861714827
-
Genetic diversity and genomic plasticity of Cryptococcus neoformans AD hybrid strains
-
Li, W., Averette, A.F., Desnos-Ollivier, M., Ni, M., Dromer, F., and Heitman, J. (2012) Genetic diversity and genomic plasticity of Cryptococcus neoformans AD hybrid strains. G3 (Bethesda) 2: 83-97.
-
(2012)
G3 (Bethesda)
, vol.2
, pp. 83-97
-
-
Li, W.1
Averette, A.F.2
Desnos-Ollivier, M.3
Ni, M.4
Dromer, F.5
Heitman, J.6
-
48
-
-
84872835269
-
Haplotype-based variant detection from short-read sequencing
-
Cornell University Library.
-
Marth, E.G.A.G. (2012) Haplotype-based variant detection from short-read sequencing. Cornell University Library.
-
(2012)
-
-
Marth, E.G.A.G.1
-
49
-
-
84880398401
-
Do the honeybee pathogens Nosema ceranae and deformed wing virus act synergistically?
-
Martin, S.J., Hardy, J., Villalobos, E., Martin-Hernandez, R., Nikaido, S., and Higes, M. (2013) Do the honeybee pathogens Nosema ceranae and deformed wing virus act synergistically? Environ Microbiol Rep 5: 506-510.
-
(2013)
Environ Microbiol Rep
, vol.5
, pp. 506-510
-
-
Martin, S.J.1
Hardy, J.2
Villalobos, E.3
Martin-Hernandez, R.4
Nikaido, S.5
Higes, M.6
-
50
-
-
35448993270
-
Outcome of colonization of Apis mellifera by Nosema ceranae
-
Martin-Hernandez, R., Meana, A., Prieto, L., Salvador, A.M., Garrido-Bailon, E., and Higes, M. (2007) Outcome of colonization of Apis mellifera by Nosema ceranae. Appl Environ Microbiol 73: 6331-6338.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 6331-6338
-
-
Martin-Hernandez, R.1
Meana, A.2
Prieto, L.3
Salvador, A.M.4
Garrido-Bailon, E.5
Higes, M.6
-
51
-
-
4544315553
-
Clonal reproduction and linkage disequilibrium in diploids: a simulation study
-
de Meeus, T., and Balloux, F. (2004) Clonal reproduction and linkage disequilibrium in diploids: a simulation study. Infect Genet Evol 4: 345-351.
-
(2004)
Infect Genet Evol
, vol.4
, pp. 345-351
-
-
de Meeus, T.1
Balloux, F.2
-
52
-
-
84920972482
-
Comparative virulence and competition between Nosema apis and Nosema ceranae in honey bees (Apis mellifera)
-
Milbrath, M.O., van Tran, T., Huang, W.-F., Solter, L.F., Tarpy, D.R., Lawrence, F., and Huang, Z.Y. (2015) Comparative virulence and competition between Nosema apis and Nosema ceranae in honey bees (Apis mellifera). J Invertebr Pathol 125: 9-15.
-
(2015)
J Invertebr Pathol
, vol.125
, pp. 9-15
-
-
Milbrath, M.O.1
van Tran, T.2
Huang, W.-F.3
Solter, L.F.4
Tarpy, D.R.5
Lawrence, F.6
Huang, Z.Y.7
-
53
-
-
80455126001
-
Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems
-
Minoche, A.E., Dohm, J.C., and Himmelbauer, H. (2011) Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems. Genome Biol 12: R112.
-
(2011)
Genome Biol
, vol.12
, pp. R112
-
-
Minoche, A.E.1
Dohm, J.C.2
Himmelbauer, H.3
-
54
-
-
84896129503
-
Presence of Nosema ceranae associated with honeybee queen introductions
-
Munoz, I., Cepero, A., Pinto, M.A., Martin-Hernandez, R., Higes, M., and De la Rua, P. (2014) Presence of Nosema ceranae associated with honeybee queen introductions. Infect Genet Evol 23: 161-168.
-
(2014)
Infect Genet Evol
, vol.23
, pp. 161-168
-
-
Munoz, I.1
Cepero, A.2
Pinto, M.A.3
Martin-Hernandez, R.4
Higes, M.5
De la Rua, P.6
-
55
-
-
79960254324
-
The spread of pathogens through trade in honey bees and their products (including queen bees and semen): overview and recent developments
-
Mutinelli, F. (2011) The spread of pathogens through trade in honey bees and their products (including queen bees and semen): overview and recent developments. Rev Sci Tech 30: 257-271.
-
(2011)
Rev Sci Tech
, vol.30
, pp. 257-271
-
-
Mutinelli, F.1
-
56
-
-
33644864858
-
Clonal population structure and genetic diversity of Candida albicans in AIDS patients from Abidjan (Cote d'Ivoire)
-
Nebavi, F., Ayala, F.J., Renaud, F., Bertout, S., Eholie, S., Moussa, K., etal. (2006) Clonal population structure and genetic diversity of Candida albicans in AIDS patients from Abidjan (Cote d'Ivoire). Proc Natl Acad Sci USA 103: 3663-3668.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 3663-3668
-
-
Nebavi, F.1
Ayala, F.J.2
Renaud, F.3
Bertout, S.4
Eholie, S.5
Moussa, K.6
-
57
-
-
13444256478
-
Inparanoid: a comprehensive database of eukaryotic orthologs
-
O'Brien, K.P., Remm, M., and Sonnhammer, E.L. (2005) Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res 33: D476-D480.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. D476-D480
-
-
O'Brien, K.P.1
Remm, M.2
Sonnhammer, E.L.3
-
58
-
-
84874937689
-
Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation
-
Pan, G., Xu, J., Li, T., Xia, Q., Liu, S.L., Zhang, G., etal. (2013) Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation. BMC Genomics 14: 186.
-
(2013)
BMC Genomics
, vol.14
, pp. 186
-
-
Pan, G.1
Xu, J.2
Li, T.3
Xia, Q.4
Liu, S.L.5
Zhang, G.6
-
59
-
-
77949527981
-
pegas: an R package for population genetics with an integrated-modular approach
-
Paradis, E. (2010) pegas: an R package for population genetics with an integrated-modular approach. Bioinformatics 26: 419-420.
-
(2010)
Bioinformatics
, vol.26
, pp. 419-420
-
-
Paradis, E.1
-
60
-
-
80053345905
-
SignalP 4.0: discriminating signal peptides from transmembrane regions
-
Petersen, T.N., Brunak, S., von Heijne, G., and Nielsen, H. (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8: 785-786.
-
(2011)
Nat Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
61
-
-
84862777932
-
Pesticide exposure in honey bees results in increased levels of the gut pathogen Nosema
-
Pettis, J.S., van Engelsdorp, D., Johnson, J., and Dively, G. (2012) Pesticide exposure in honey bees results in increased levels of the gut pathogen Nosema. Naturwissenschaften 99: 153-158.
-
(2012)
Naturwissenschaften
, vol.99
, pp. 153-158
-
-
Pettis, J.S.1
van Engelsdorp, D.2
Johnson, J.3
Dively, G.4
-
62
-
-
84869479736
-
Annotation of microsporidian genomes using transcriptional signals
-
Peyretaillade, E., Parisot, N., Polonais, V., Terrat, S., Denonfoux, J., Dugat-Bony, E., etal. (2012) Annotation of microsporidian genomes using transcriptional signals. Nat Commun 3: 1137.
-
(2012)
Nat Commun
, vol.3
, pp. 1137
-
-
Peyretaillade, E.1
Parisot, N.2
Polonais, V.3
Terrat, S.4
Denonfoux, J.5
Dugat-Bony, E.6
-
63
-
-
84869026948
-
Inference of population splits and mixtures from genome-wide allele frequency data
-
Pickrell, J.K., and Pritchard, J.K. (2012) Inference of population splits and mixtures from genome-wide allele frequency data. PLoS Genet 8: e1002967.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002967
-
-
Pickrell, J.K.1
Pritchard, J.K.2
-
64
-
-
84924172614
-
The Ordospora colligata genome: Evolution of extreme reduction in microsporidia and host-to-parasite horizontal gene transfer
-
Pombert, J.F., Haag, K.L., Beidas, S., Ebert, D., and Keeling, P.J. (2015) The Ordospora colligata genome: Evolution of extreme reduction in microsporidia and host-to-parasite horizontal gene transfer. MBio. 6: e02400-02414.
-
(2015)
MBio.
, vol.6
, pp. e02400-e02414
-
-
Pombert, J.F.1
Haag, K.L.2
Beidas, S.3
Ebert, D.4
Keeling, P.J.5
-
65
-
-
77954591874
-
Global pollinator declines: trends, impacts and drivers
-
Potts, S.G., Biesmeijer, J.C., Kremen, C., Neumann, P., Schweiger, O., and Kunin, W.E. (2010) Global pollinator declines: trends, impacts and drivers. Trends Ecol Evol 25: 345-353.
-
(2010)
Trends Ecol Evol
, vol.25
, pp. 345-353
-
-
Potts, S.G.1
Biesmeijer, J.C.2
Kremen, C.3
Neumann, P.4
Schweiger, O.5
Kunin, W.E.6
-
66
-
-
84902995870
-
Genome comparison of Candida orthopsilosis clinical strains reveals the existence of hybrids between two distinct subspecies
-
Pryszcz, L.P., Nemeth, T., Gacser, A., and Gabaldon, T. (2014) Genome comparison of Candida orthopsilosis clinical strains reveals the existence of hybrids between two distinct subspecies. Genome Biol Evol 6: 1069-1078.
-
(2014)
Genome Biol Evol
, vol.6
, pp. 1069-1078
-
-
Pryszcz, L.P.1
Nemeth, T.2
Gacser, A.3
Gabaldon, T.4
-
67
-
-
77951770756
-
BEDTools: a flexible suite of utilities for comparing genomic features
-
Quinlan, A.R., and Hall, I.M. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26: 841-842.
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
68
-
-
80052824121
-
MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons
-
Ranwez, V., Harispe, S., Delsuc, F., and Douzery, E.J. (2011) MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons. PLoS ONE 6: e22594.
-
(2011)
PLoS ONE
, vol.6
, pp. e22594
-
-
Ranwez, V.1
Harispe, S.2
Delsuc, F.3
Douzery, E.J.4
-
69
-
-
83055181962
-
Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania
-
Rogers, M.B., Hilley, J.D., Dickens, N.J., Wilkes, J., Bates, P.A., Depledge, D.P., etal. (2011) Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Genome Res 21: 2129-2142.
-
(2011)
Genome Res
, vol.21
, pp. 2129-2142
-
-
Rogers, M.B.1
Hilley, J.D.2
Dickens, N.J.3
Wilkes, J.4
Bates, P.A.5
Depledge, D.P.6
-
70
-
-
84896704898
-
Genomic confirmation of hybridisation and recent inbreeding in a vector-isolated Leishmania population
-
Rogers, M.B., Downing, T., Smith, B.A., Imamura, H., Sanders, M., Svobodova, M., etal. (2014) Genomic confirmation of hybridisation and recent inbreeding in a vector-isolated Leishmania population. PLoS Genet 10: e1004092.
-
(2014)
PLoS Genet
, vol.10
, pp. e1004092
-
-
Rogers, M.B.1
Downing, T.2
Smith, B.A.3
Imamura, H.4
Sanders, M.5
Svobodova, M.6
-
71
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist, F., and Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
72
-
-
84878680711
-
Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data
-
Rosenblum, E.B., James, T.Y., Zamudio, K.R., Poorten, T.J., Ilut, D., Rodriguez, D., etal. (2013) Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data. Proc Natl Acad Sci USA 110: 9385-9390.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 9385-9390
-
-
Rosenblum, E.B.1
James, T.Y.2
Zamudio, K.R.3
Poorten, T.J.4
Ilut, D.5
Rodriguez, D.6
-
73
-
-
84883096502
-
New insights on the genetic diversity of the honeybee parasite Nosema ceranae based on multilocus sequence analysis
-
Roudel, M., Aufauvre, J., Corbara, B., Delbac, F., and Blot, N. (2013) New insights on the genetic diversity of the honeybee parasite Nosema ceranae based on multilocus sequence analysis. Parasitology 140: 1346-1356.
-
(2013)
Parasitology
, vol.140
, pp. 1346-1356
-
-
Roudel, M.1
Aufauvre, J.2
Corbara, B.3
Delbac, F.4
Blot, N.5
-
74
-
-
78650773350
-
Polymorphism and recombination for rDNA in the putatively asexual microsporidian Nosema ceranae, a pathogen of honeybees
-
Sagastume, S., del Aguila, C., Martin-Hernandez, R., Higes, M., and Henriques-Gil, N. (2011) Polymorphism and recombination for rDNA in the putatively asexual microsporidian Nosema ceranae, a pathogen of honeybees. Environ Microbiol 13: 84-95.
-
(2011)
Environ Microbiol
, vol.13
, pp. 84-95
-
-
Sagastume, S.1
del Aguila, C.2
Martin-Hernandez, R.3
Higes, M.4
Henriques-Gil, N.5
-
75
-
-
84893678746
-
Ribosomal gene polymorphism in small genomes: analysis of different 16S rRNA sequences expressed in the honeybee parasite Nosema ceranae (Microsporidia)
-
Sagastume, S., Martin-Hernandez, R., Higes, M., and Henriques-Gil, N. (2014) Ribosomal gene polymorphism in small genomes: analysis of different 16S rRNA sequences expressed in the honeybee parasite Nosema ceranae (Microsporidia). J Eukaryot Microbiol 61: 42-50.
-
(2014)
J Eukaryot Microbiol
, vol.61
, pp. 42-50
-
-
Sagastume, S.1
Martin-Hernandez, R.2
Higes, M.3
Henriques-Gil, N.4
-
76
-
-
84875492810
-
Extremely reduced levels of heterozygosity in the vertebrate pathogen Encephalitozoon cuniculi
-
Selman, M., Sak, B., Kvac, M., Farinelli, L., Weiss, L.M., and Corradi, N. (2013) Extremely reduced levels of heterozygosity in the vertebrate pathogen Encephalitozoon cuniculi. Eukaryot Cell 12: 496-502.
-
(2013)
Eukaryot Cell
, vol.12
, pp. 496-502
-
-
Selman, M.1
Sak, B.2
Kvac, M.3
Farinelli, L.4
Weiss, L.M.5
Corradi, N.6
-
77
-
-
77954202497
-
DendroPy: a Python library for phylogenetic computing
-
Sukumaran, J., and Holder, M.T. (2010) DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571.
-
(2010)
Bioinformatics
, vol.26
, pp. 1569-1571
-
-
Sukumaran, J.1
Holder, M.T.2
-
78
-
-
84914179053
-
R: a language and environment for statistical computing
-
(ed. by Computing RFfS).
-
Team, R.C. (2013) R: a language and environment for statistical computing. (ed. by Computing RFfS).
-
(2013)
-
-
Team, R.C.1
-
79
-
-
84903554014
-
Virulence and polar tube protein genetic diversity of Nosema ceranae (Microsporidia) field isolates from Northern and Southern Europe in honeybees (Apis mellifera iberiensis)
-
Van der Zee, R., Gomez-Moracho, T., Pisa, L., Sagastume, S., Garcia-Palencia, P., Maside, X., etal. (2014) Virulence and polar tube protein genetic diversity of Nosema ceranae (Microsporidia) field isolates from Northern and Southern Europe in honeybees (Apis mellifera iberiensis). Environ Microbiol Rep 6: 401-413.
-
(2014)
Environ Microbiol Rep
, vol.6
, pp. 401-413
-
-
Van der Zee, R.1
Gomez-Moracho, T.2
Pisa, L.3
Sagastume, S.4
Garcia-Palencia, P.5
Maside, X.6
-
80
-
-
84884694842
-
Transmission of hypervirulence traits via sexual reproduction within and between lineages of the human fungal pathogen Cryptococcus gattii
-
Voelz, K., Ma, H., Phadke, S., Byrnes, E.J., Zhu, P., Mueller, O., etal. (2013) Transmission of hypervirulence traits via sexual reproduction within and between lineages of the human fungal pathogen Cryptococcus gattii. PLoS Genet 9: e1003771.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003771
-
-
Voelz, K.1
Ma, H.2
Phadke, S.3
Byrnes, E.J.4
Zhu, P.5
Mueller, O.6
-
82
-
-
77955928396
-
Colony losses in the Netherlands
-
Zee, R.V.D. (2010) Colony losses in the Netherlands. Journal of Apicultural Research 49: 121-123.
-
(2010)
Journal of Apicultural Research
, vol.49
, pp. 121-123
-
-
Zee, R.V.D.1
-
83
-
-
84889261375
-
High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus
-
Zheng, W., Huang, L., Huang, J., Wang, X., Chen, X., Zhao, J., etal. (2013) High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus. Nat Commun 4: 2673.
-
(2013)
Nat Commun
, vol.4
, pp. 2673
-
-
Zheng, W.1
Huang, L.2
Huang, J.3
Wang, X.4
Chen, X.5
Zhao, J.6
|