-
1
-
-
84863210484
-
Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi
-
Capella-Gutiérrez S, Marcet-Houben M, Gabaldón T. 2012. Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi. BMC Biol. 10:47. http://dx.doi.org/10.1186/1741-7007-10-47.
-
(2012)
BMC Biol
, vol.10
, pp. 47
-
-
Capella-Gutiérrez, S.1
Marcet-Houben, M.2
Gabaldón, T.3
-
2
-
-
84869426527
-
Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth
-
Cuomo CA, Desjardins CA, Bakowski MA, Goldberg J, Ma AT, Becnel JJ, Didier ES, Fan L, Heiman DI, Levin JZ, Young S, Zeng Q, Troemel ER. 2012. Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth. Genome Res. 22:2478-2488. http://dx.doi.org/10.1101/gr.142802.112.
-
(2012)
Genome Res
, vol.22
, pp. 2478-2488
-
-
Cuomo, C.A.1
Desjardins, C.A.2
Bakowski, M.A.3
Goldberg, J.4
Ma, A.T.5
Becnel, J.J.6
Didier, E.S.7
Fan, L.8
Heiman, D.I.9
Levin, J.Z.10
Young, S.11
Zeng, Q.12
Troemel, E.R.13
-
3
-
-
84882621521
-
Shared signatures of parasitism and phylogenomics unite cryptomycota and microsporidia
-
James TY, Pelin A, Bonen L, Ahrendt S, Sain D, Corradi N, Stajich JE. 2013 Shared signatures of parasitism and phylogenomics unite cryptomycota and microsporidia. Curr. Biol. CB 23:1548-1553. http://dx.doi.org/10.1016/j.cub.2013.06.057.
-
(2013)
Curr. Biol. CB
, vol.23
, pp. 1548-1553
-
-
James, T.Y.1
Pelin, A.2
Bonen, L.3
Ahrendt, S.4
Sain, D.5
Corradi, N.6
Stajich, J.E.7
-
4
-
-
84891692970
-
Microsporidia are natural intracellular parasites of the nematode Caenorhabditis elegans
-
Troemel ER, Félix MA, Whiteman NK, Barrière A, Ausubel FM. 2008. Microsporidia are natural intracellular parasites of the nematode Caenorhabditis elegans. PLoS Biol. 6:2736-2752. http://dx.doi.org/10.1371/journal.pbio.0060309.
-
(2008)
PLoS Biol
, vol.6
, pp. 2736-2752
-
-
Troemel, E.R.1
Félix, M.A.2
Whiteman, N.K.3
Barrière, A.4
Ausubel, F.M.5
-
5
-
-
84903478191
-
Ubiquitinmediated response to microsporidia and virus infection in C. elegans
-
Bakowski MA, Desjardins CA, Smelkinson MG, Dunbar TL, Lopez-Moyado IF, Rifkin SA, Cuomo CA, Troemel ER. 2014. Ubiquitinmediated response to microsporidia and virus infection in C. elegans. PLoS Pathog. 10:e1004200.
-
(2014)
PLoS Pathog
, vol.10
-
-
Bakowski, M.A.1
Desjardins, C.A.2
Smelkinson, M.G.3
Dunbar, T.L.4
Lopez-Moyado, I.F.5
Rifkin, S.A.6
Cuomo, C.A.7
Troemel, E.R.8
-
6
-
-
84927136160
-
Microsporidia infections in Caenorhabditis elegans and other nematodes
-
Weiss LM, Becnel JJ (ed). John Wiley & Sons, Chichester, UK, Chapter 13
-
Bakowski MA, Luallen RJ, Troemel ER. 2014. Chapter 13. Microsporidia infections in Caenorhabditis elegans and other nematodes. In Weiss LM, Becnel JJ (ed), Microsporidia: pathogens of opportunity. John Wiley & Sons, Chichester, UK. http://dx.doi.org/10.1002/9781118395264.ch13.
-
(2014)
Microsporidia: pathogens of opportunity
-
-
Bakowski, M.A.1
Luallen, R.J.2
Troemel, E.R.3
-
7
-
-
78650762588
-
A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries
-
Fisher S, Barry A, Abreu J, Minie B, Nolan J, Delorey TM, Young G, Fennell TJ, Allen A, Ambrogio L, Berlin AM, Blumenstiel B, Cibulskis K, Friedrich D, Johnson R, Juhn F, Reilly B, Shammas R, Stalker J, Sykes SM, Thompson J, Walsh J, Zimmer A, Zwirko Z, Gabriel S, Nicol R, Nusbaum C. 2011. A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries. Genome Biol. 12:R1. doi: http://dx.doi.org/10.1186/gb-2011-12-1-r1.
-
(2011)
Genome Biol
, vol.12
, pp. R1
-
-
Fisher, S.1
Barry, A.2
Abreu, J.3
Minie, B.4
Nolan, J.5
Delorey, T.M.6
Young, G.7
Fennell, T.J.8
Allen, A.9
Ambrogio, L.10
Berlin, A.M.11
Blumenstiel, B.12
Cibulskis, K.13
Friedrich, D.14
Johnson, R.15
Juhn, F.16
Reilly, B.17
Shammas, R.18
Stalker, J.19
Sykes, S.M.20
Thompson, J.21
Walsh, J.22
Zimmer, A.23
Zwirko, Z.24
Gabriel, S.25
Nicol, R.26
Nusbaum, C.27
more..
-
8
-
-
84857411659
-
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011 Proc
-
Grad YH, Lipsitch M, Feldgarden M, Arachchi HM, Cerqueira GC, Fitzgerald M, Godfrey P, Haas BJ, Murphy CI, Russ C, Sykes S, Walker BJ, Wortman JR, Young S, Zeng Q, Abouelleil A, Bochicchio J, Chauvin S, Desmet T, Gujja S, McCowan C, Montmayeur A, Steelman S, Frimodt-Møller J, Petersen AM, Struve C, Krogfelt KA, Bingen E, Weill FX, Lander ES, Nusbaum C, Birren BW, Hung DT, Hanage WP. 2012. Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011 Proc. Natl. Acad. Sci. U. S. A. 109:3065-3070. http://dx.doi.org/10.1073/pnas.1121491109.
-
(2012)
Natl. Acad. Sci. U. S. A
, vol.109
, pp. 3065-3070
-
-
Grad, Y.H.1
Lipsitch, M.2
Feldgarden, M.3
Arachchi, H.M.4
Cerqueira, G.C.5
Fitzgerald, M.6
Godfrey, P.7
Haas, B.J.8
Murphy, C.I.9
Russ, C.10
Sykes, S.11
Walker, B.J.12
Wortman, J.R.13
Young, S.14
Zeng, Q.15
Abouelleil, A.16
Bochicchio, J.17
Chauvin, S.18
Desmet, T.19
Gujja, S.20
McCowan, C.21
Montmayeur, A.22
Steelman, S.23
Frimodt-Møller, J.24
Petersen, A.M.25
Struve, C.26
Krogfelt, K.A.27
Bingen, E.28
Weill, F.X.29
Lander, E.S.30
Nusbaum, C.31
Birren, B.W.32
Hung, D.T.33
Hanage, W.P.34
more..
-
9
-
-
79952178131
-
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
-
Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, Nicol R, Gnirke A, Nusbaum C, Lander ES, Jaffe DB. 2011. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc. Natl. Acad. Sci. U. S. A. 108: 1513-1518. http://dx.doi.org/10.1073/pnas.1017351108.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A
, vol.108
, pp. 1513-1518
-
-
Gnerre, S.1
Maccallum, I.2
Przybylski, D.3
Ribeiro, F.J.4
Burton, J.N.5
Walker, B.J.6
Sharpe, T.7
Hall, G.8
Shea, T.P.9
Sykes, S.10
Berlin, A.M.11
Aird, D.12
Costello, M.13
Daza, R.14
Williams, L.15
Nicol, R.16
Gnirke, A.17
Nusbaum, C.18
Lander, E.S.19
Jaffe, D.B.20
more..
-
10
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760. http://dx.doi.org/10.1093/bioinformatics/btp324.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
11
-
-
77956295988
-
The Genome Analysis Toolkit: a MapReduce framework for analyzing nextgeneration DNA sequencing data
-
McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA. 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing nextgeneration DNA sequencing data. Genome Res. 20:1297-1303. http://dx.doi.org/10.1101/gr.107524.110.1.
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
Hanna, M.2
Banks, E.3
Sivachenko, A.4
Cibulskis, K.5
Kernytsky, A.6
Garimella, K.7
Altshuler, D.8
Gabriel, S.9
Daly, M.10
DePristo, M.A.11
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