메뉴 건너뛰기




Volumn 15, Issue 11, 2015, Pages 1441-1454

SRM/MRM targeted proteomics as a tool for biomarker validation and absolute quantification in human urine

Author keywords

absolute quantification; biomarker validation; multiple reaction monitoring; selected reaction monitoring; targeted proteomics; urine

Indexed keywords

BIOLOGICAL MARKER; PROTEOME;

EID: 84947127997     PISSN: 14737159     EISSN: 17448352     Source Type: Journal    
DOI: 10.1586/14737159.2015.1093937     Document Type: Review
Times cited : (46)

References (86)
  • 1
    • 84925014056 scopus 로고    scopus 로고
    • Historical perspectives in clinical pathology: A history of glucose measurement
    • Moodley N, Ngxamngxa U, Turzyniecka MJ, Pillay TS. Historical perspectives in clinical pathology: a history of glucose measurement. J Clin Pathol 2015; 68 (4): 258-64
    • (2015) J Clin Pathol , vol.68 , Issue.4 , pp. 258-264
    • Moodley, N.1    Ngxamngxa, U.2    Turzyniecka, M.J.3    Pillay, T.S.4
  • 2
    • 34548359247 scopus 로고    scopus 로고
    • Urine proteomics: The present and future of measuring urinary protein components in disease
    • Barratt J, Topham P. Urine proteomics: the present and future of measuring urinary protein components in disease. CMAJ 2007; 177 (4): 361-8
    • (2007) CMAJ , vol.177 , Issue.4 , pp. 361-368
    • Barratt, J.1    Topham, P.2
  • 3
    • 70350746686 scopus 로고    scopus 로고
    • Urine proteomics for profiling of human disease using high accuracy mass spectrometry
    • Kentsis A, Monigatti F, Dorff K, et al. Urine proteomics for profiling of human disease using high accuracy mass spectrometry. Proteom Clin App 2009; 3 (9): 1052-61
    • (2009) Proteom Clin App , vol.3 , Issue.9 , pp. 1052-1061
    • Kentsis, A.1    Monigatti, F.2    Dorff, K.3
  • 4
    • 33750364830 scopus 로고    scopus 로고
    • The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins
    • Adachi J, Kumar C, Zhang Y, et al. The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins. Genome Biol 2006; 7 (9): R80
    • (2006) Genome Biol , vol.7 , Issue.9 , pp. R80
    • Adachi, J.1    Kumar, C.2    Zhang, Y.3
  • 5
    • 84896989065 scopus 로고    scopus 로고
    • Effect of long-term storage of urine samples on measurement of kidney injury molecule 1 (KIM-1) and neutrophil gelatinase-associated lipocalin (NGAL)
    • Van De Vrie M, Deegens JK, Van Der Vlag J, Hilbrands LB. Effect of long-term storage of urine samples on measurement of kidney injury molecule 1 (KIM-1) and neutrophil gelatinase-associated lipocalin (NGAL). Am J Kidney Dis 2014; 63 (4): 573-6
    • (2014) Am J Kidney Dis , vol.63 , Issue.4 , pp. 573-576
    • Van De Vrie, M.1    Deegens, J.K.2    Van Der Vlag, J.3    Hilbrands, L.B.4
  • 6
    • 0346101481 scopus 로고    scopus 로고
    • Urine protein profiling with surface-enhanced laser-desorption/ionization time-of-flight mass spectrometry
    • Schaub S, Wilkins J, Weiler T, et al. Urine protein profiling with surface-enhanced laser-desorption/ionization time-of-flight mass spectrometry. Kidney Int 2004; 65 (1): 323-32
    • (2004) Kidney Int , vol.65 , Issue.1 , pp. 323-332
    • Schaub, S.1    Wilkins, J.2    Weiler, T.3
  • 7
    • 33344479181 scopus 로고    scopus 로고
    • Discovery and validation of new protein biomarkers for urothelial cancer: A prospective analysis
    • Theodorescu D, Wittke S, Ross MM, et al. Discovery and validation of new protein biomarkers for urothelial cancer: a prospective analysis. Lancet Oncol 2006; 7 (3): 230-40
    • (2006) Lancet Oncol , vol.7 , Issue.3 , pp. 230-240
    • Theodorescu, D.1    Wittke, S.2    Ross, M.M.3
  • 8
    • 77950818385 scopus 로고    scopus 로고
    • Urine collection and processing for protein biomarker discovery and quantification
    • Thomas CE, Sexton W, Benson K, et al. Urine collection and processing for protein biomarker discovery and quantification. Cancer Epidemiol Bio Preven 2010; 19 (4): 953-9
    • (2010) Cancer Epidemiol Bio Preven , vol.19 , Issue.4 , pp. 953-959
    • Thomas, C.E.1    Sexton, W.2    Benson, K.3
  • 9
    • 55049108997 scopus 로고    scopus 로고
    • Urine in clinical proteomics
    • Decramer S, Gonzalez De Peredo A, Breuil B, et al. Urine in clinical proteomics. MCP 2008; 7 (10): 1850-62
    • (2008) MCP , vol.7 , Issue.10 , pp. 1850-1862
    • Decramer, S.1    Gonzalez De Peredo, A.2    Breuil, B.3
  • 10
    • 76649109590 scopus 로고    scopus 로고
    • An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers
    • Whiteaker JR, Zhao L, Anderson L, Paulovich AG. An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers. MCP 2010; 9 (1): 184-96
    • (2010) MCP , vol.9 , Issue.1 , pp. 184-196
    • Whiteaker, J.R.1    Zhao, L.2    Anderson, L.3    Paulovich, A.G.4
  • 11
    • 84898013583 scopus 로고    scopus 로고
    • Simultaneous multi-analyte urinary protein assay for bladder cancer detection
    • Rosser CJ, Dai Y, Miyake M, et al. Simultaneous multi-analyte urinary protein assay for bladder cancer detection. BMC Biotechnol 2014; 14: 24
    • (2014) BMC Biotechnol , vol.14 , pp. 24
    • Rosser, C.J.1    Dai, Y.2    Miyake, M.3
  • 12
    • 84907164391 scopus 로고    scopus 로고
    • External validation of a multiplex urinary protein panel for the detection of bladder cancer in a multicenter cohort
    • Chen LM, Chang M, Dai Y, et al. External validation of a multiplex urinary protein panel for the detection of bladder cancer in a multicenter cohort. Cancer Epidemiol Bio Preven 2014; 23 (9): 1804-12
    • (2014) Cancer Epidemiol Bio Preven , vol.23 , Issue.9 , pp. 1804-1812
    • Chen, L.M.1    Chang, M.2    Dai, Y.3
  • 13
    • 84904011624 scopus 로고    scopus 로고
    • Urinary protein biomarker panel for the detection of recurrent bladder cancer
    • Rosser CJ, Chang M, Dai Y, et al. Urinary protein biomarker panel for the detection of recurrent bladder cancer. Cancer Epidemiol Bio Preven 2014; 23 (7): 1340-5
    • (2014) Cancer Epidemiol Bio Preven , vol.23 , Issue.7 , pp. 1340-1345
    • Rosser, C.J.1    Chang, M.2    Dai, Y.3
  • 14
    • 84861323704 scopus 로고    scopus 로고
    • CCL18 in a multiplex urine-based assay for the detection of bladder cancer
    • Urquidi V, Kim J, Chang M, et al. CCL18 in a multiplex urine-based assay for the detection of bladder cancer. PLoS ONE 2012; 7 (5): e37797
    • (2012) PLoS ONE , vol.7 , Issue.5 , pp. e37797
    • Urquidi, V.1    Kim, J.2    Chang, M.3
  • 15
    • 79958280471 scopus 로고    scopus 로고
    • Native antigen fractionation protein microarrays for biomarker discovery
    • Caiazzo RJ Jr, Orourke DJ, Barder TJ, et al. Native antigen fractionation protein microarrays for biomarker discovery. Methods Molec Biol 2011; 723: 129-48
    • (2011) Methods Molec Biol , vol.723 , pp. 129-148
    • Caiazzo, R.J.1    Orourke, D.J.2    Barder, T.J.3
  • 17
    • 84859808396 scopus 로고    scopus 로고
    • Profilin 1 is a potential biomarker for bladder cancer aggressiveness
    • Zoidakis J, Makridakis M, Zerefos PG, et al. Profilin 1 is a potential biomarker for bladder cancer aggressiveness. MCP 2012; 11 (4): M111 009449
    • (2012) MCP , vol.11 , Issue.4 , pp. M111009449
    • Zoidakis, J.1    Makridakis, M.2    Zerefos, P.G.3
  • 18
    • 84884368148 scopus 로고    scopus 로고
    • Western blots versus selected reaction monitoring assays: Time to turn the tables?
    • Aebersold R, Burlingame AL, Bradshaw RA. Western blots versus selected reaction monitoring assays: time to turn the tables? MCP 2013; 12 (9): 2381-2
    • (2013) MCP , vol.12 , Issue.9 , pp. 2381-2382
    • Aebersold, R.1    Burlingame, A.L.2    Bradshaw, R.A.3
  • 19
    • 84861990380 scopus 로고    scopus 로고
    • Selected reaction monitoring-based proteomics: Workflows, potential, pitfalls and future directions
    • Picotti P, Aebersold R. Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions. Nat Methods 2012; 9 (6): 555-66
    • (2012) Nat Methods , vol.9 , Issue.6 , pp. 555-566
    • Picotti, P.1    Aebersold, R.2
  • 20
    • 77956304093 scopus 로고    scopus 로고
    • Mass spectrometry in high-throughput proteomics: Ready for the big time
    • Nilsson T, Mann M, Aebersold R, et al. Mass spectrometry in high-throughput proteomics: ready for the big time. Nat Methods 2010; 7 (9): 681-5
    • (2010) Nat Methods , vol.7 , Issue.9 , pp. 681-685
    • Nilsson, T.1    Mann, M.2    Aebersold, R.3
  • 21
    • 33846133955 scopus 로고    scopus 로고
    • Computational prediction of proteotypic peptides for quantitative proteomics
    • Mallick P, Schirle M, Chen SS, et al. Computational prediction of proteotypic peptides for quantitative proteomics. Nat Biotechnol 2007; 25 (1): 125-31
    • (2007) Nat Biotechnol , vol.25 , Issue.1 , pp. 125-131
    • Mallick, P.1    Schirle, M.2    Chen, S.S.3
  • 22
    • 84878644042 scopus 로고    scopus 로고
    • Targeted quantitation of proteins by mass spectrometry
    • Liebler DC, Zimmerman LJ. Targeted quantitation of proteins by mass spectrometry. Biochemistry 2013; 52 (22): 3797-806
    • (2013) Biochemistry , vol.52 , Issue.22 , pp. 3797-3806
    • Liebler, D.C.1    Zimmerman, L.J.2
  • 23
    • 23944526367 scopus 로고    scopus 로고
    • PRIDE: The proteomics identifications database
    • Martens L, Hermjakob H, Jones P, et al. PRIDE: the proteomics identifications database. Proteomics 2005; 5 (13): 3537-45
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3537-3545
    • Martens, L.1    Hermjakob, H.2    Jones, P.3
  • 24
    • 11144320641 scopus 로고    scopus 로고
    • Open source system for analyzing, validating, and storing protein identification data
    • Craig R, Cortens JP, Beavis RC. Open source system for analyzing, validating, and storing protein identification data. J Proteome Res 2004; 3 (6): 1234-42
    • (2004) J Proteome Res , vol.3 , Issue.6 , pp. 1234-1242
    • Craig, R.1    Cortens, J.P.2    Beavis, R.C.3
  • 25
    • 43049127826 scopus 로고    scopus 로고
    • PeptideAtlas: A resource for target selection for emerging targeted proteomics workflows
    • Deutsch EW, Lam H, Aebersold R. PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows. EMBO Rep 2008; 9 (5): 429-34
    • (2008) EMBO Rep , vol.9 , Issue.5 , pp. 429-434
    • Deutsch, E.W.1    Lam, H.2    Aebersold, R.3
  • 26
    • 33947433568 scopus 로고    scopus 로고
    • Peptide Atlas. Available from: www.peptideatlas.org
    • Peptide Atlas
  • 27
    • 84921745922 scopus 로고    scopus 로고
    • Quantification of proteins in urine samples using targeted mass spectrometry methods
    • Khristenko N, Domon B. Quantification of proteins in urine samples using targeted mass spectrometry methods. Methods molec Biol 2015; 1243: 207-20
    • (2015) Methods Molec Biol , vol.1243 , pp. 207-220
    • Khristenko, N.1    Domon, B.2
  • 28
    • 38349068918 scopus 로고    scopus 로고
    • Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution
    • Keshishian H, Addona T, Burgess M, et al. Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution. MCP 2007; 6 (12): 2212-29
    • (2007) MCP , vol.6 , Issue.12 , pp. 2212-2229
    • Keshishian, H.1    Addona, T.2    Burgess, M.3
  • 29
    • 84863900597 scopus 로고    scopus 로고
    • A computational tool to detect and avoid redundancy in selected reaction monitoring
    • Rost H, Malmstrom L, Aebersold R. A computational tool to detect and avoid redundancy in selected reaction monitoring. MCP 2012; 11 (8): 540-9
    • (2012) MCP , vol.11 , Issue.8 , pp. 540-549
    • Rost, H.1    Malmstrom, L.2    Aebersold, R.3
  • 30
    • 41849144111 scopus 로고    scopus 로고
    • The UK Biobank sample handling and storage protocol for the collection, processing and archiving of human blood and urine
    • Elliott P, Peakman TC, Biobank UK. The UK Biobank sample handling and storage protocol for the collection, processing and archiving of human blood and urine. Int J Epidemiol 2008; 37 (2): 234-44
    • (2008) Int J Epidemiol , vol.37 , Issue.2 , pp. 234-244
    • Elliott, P.1    Peakman, T.C.2    Biobank, U.K.3
  • 31
    • 77953722868 scopus 로고    scopus 로고
    • Comprehensive human urine standards for comparability and standardization in clinical proteome analysis. Proteomics
    • Mischak H, Kolch W, Aivaliotis M, et al. Comprehensive human urine standards for comparability and standardization in clinical proteome analysis. Proteomics. Clin App 2010; 4 (4): 464-78
    • (2010) Clin App , vol.4 , Issue.4 , pp. 464-478
    • Mischak, H.1    Kolch, W.2    Aivaliotis, M.3
  • 32
    • 79952300137 scopus 로고    scopus 로고
    • Toward a standardized urine proteome analysis methodology
    • Court M, Selevsek N, Matondo M, et al. Toward a standardized urine proteome analysis methodology. Proteomics 2011; 11 (6): 1160-71
    • (2011) Proteomics , vol.11 , Issue.6 , pp. 1160-1171
    • Court, M.1    Selevsek, N.2    Matondo, M.3
  • 33
    • 84862832755 scopus 로고    scopus 로고
    • Multiplexed quantification of 63 proteins in human urine by multiple reaction monitoring-based mass spectrometry for discovery of potential bladder cancer biomarkers
    • Chen YT, Chen HW, Domanski D, et al. Multiplexed quantification of 63 proteins in human urine by multiple reaction monitoring-based mass spectrometry for discovery of potential bladder cancer biomarkers. J Proteomics 2012; 75 (12): 3529-45
    • (2012) J Proteomics , vol.75 , Issue.12 , pp. 3529-3545
    • Chen, Y.T.1    Chen, H.W.2    Domanski, D.3
  • 34
    • 79952308635 scopus 로고    scopus 로고
    • Systematic quantification of peptides/proteins in urine using selected reaction monitoring
    • Selevsek N, Matondo M, Sanchez Carbayo M, et al. Systematic quantification of peptides/proteins in urine using selected reaction monitoring. Proteomics 2011; 11 (6): 1135-47
    • (2011) Proteomics , vol.11 , Issue.6 , pp. 1135-1147
    • Selevsek, N.1    Matondo, M.2    Sanchez Carbayo, M.3
  • 35
    • 84983222611 scopus 로고    scopus 로고
    • Available from: www.hukpp.org
  • 36
    • 84983219539 scopus 로고    scopus 로고
    • Available from: www.eurokup.org
  • 37
    • 84983219538 scopus 로고    scopus 로고
    • Available from: https://brendanx-uw1.gs.washington.edu/labkey/project/home/software/Skyline
  • 38
    • 77951965920 scopus 로고    scopus 로고
    • Skyline: An open source document editor for creating and analyzing targeted proteomics experiments
    • Maclean B, Tomazela DM, Shulman N, et al. Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 2010; 26 (7): 966-8
    • (2010) Bioinformatics , vol.26 , Issue.7 , pp. 966-968
    • Maclean, B.1    Tomazela, D.M.2    Shulman, N.3
  • 39
    • 66149134917 scopus 로고    scopus 로고
    • MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions
    • Mead JA, Bianco L, Ottone V, et al. MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions. Mol Cell Proteom 2009; 8 (4): 696-705
    • (2009) Mol Cell Proteom , vol.8 , Issue.4 , pp. 696-705
    • Mead, J.A.1    Bianco, L.2    Ottone, V.3
  • 40
    • 79952703214 scopus 로고    scopus 로고
    • ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry
    • Brusniak MY, Kwok ST, Christiansen M, et al. ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry. BMC Bioinformatics 2011; 12: 78
    • (2011) BMC Bioinformatics , vol.12 , pp. 78
    • Brusniak, M.Y.1    Kwok, S.T.2    Christiansen, M.3
  • 41
    • 66749171697 scopus 로고    scopus 로고
    • Statistical design of quantitative mass spectrometry-based proteomic experiments
    • Oberg AL, Vitek O. Statistical design of quantitative mass spectrometry-based proteomic experiments. J Proteome Res 2009; 8 (5): 2144-56
    • (2009) J Proteome Res , vol.8 , Issue.5 , pp. 2144-2156
    • Oberg, A.L.1    Vitek, O.2
  • 42
    • 84855269263 scopus 로고    scopus 로고
    • Computational mass spectrometry-based proteomics
    • Kall L, Vitek O. Computational mass spectrometry-based proteomics. PLOS Comput Biol 2011; 7 (12): e1002277
    • (2011) PLOS Comput Biol , vol.7 , Issue.12 , pp. e1002277
    • Kall, L.1    Vitek, O.2
  • 44
    • 84907033616 scopus 로고    scopus 로고
    • MSstats: An R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments
    • Choi M, Chang CY, Clough T, et al. MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments. Bioinformatics 2014; 30 (17): 2524-6
    • (2014) Bioinformatics , vol.30 , Issue.17 , pp. 2524-2526
    • Choi, M.1    Chang, C.Y.2    Clough, T.3
  • 45
    • 84983214440 scopus 로고    scopus 로고
    • Available from: www.msstats.org
  • 46
    • 84870816675 scopus 로고    scopus 로고
    • Bioconductor. Available from: www.bioconductor.org
    • Bioconductor
  • 48
    • 84863923380 scopus 로고    scopus 로고
    • Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics
    • Huttenhain R, Soste M, Selevsek N, et al. Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics. Sci Transl Med 2012; 4 (142): 142ra194
    • (2012) Sci Transl Med , vol.4 , Issue.142 , pp. 142ra194
    • Huttenhain, R.1    Soste, M.2    Selevsek, N.3
  • 49
    • 85128759053 scopus 로고    scopus 로고
    • A list of candidate cancer biomarkers for targeted proteomics
    • Polanski M, Anderson NL. A list of candidate cancer biomarkers for targeted proteomics. Biomark Insights 2007; 1: 1-48
    • (2007) Biomark Insights , vol.1 , pp. 1-48
    • Polanski, M.1    Anderson, N.L.2
  • 50
    • 0842311696 scopus 로고    scopus 로고
    • Differential expression of CD44 variant isoforms by cell lines and tissue specimens of transitional cell carcinomas
    • C
    • Chuang CK, Liao SK. Differential expression of CD44 variant isoforms by cell lines and tissue specimens of transitional cell carcinomas. Anticancer Res 2003; 23 (6C): 4635-9
    • (2003) Anticancer Res , vol.23 , Issue.6 , pp. 4635-4639
    • Chuang, C.K.1    Liao, S.K.2
  • 51
    • 0036144277 scopus 로고    scopus 로고
    • Overexpression of clusterin in transitional cell carcinoma of the bladder is related to disease progression and recurrence
    • Miyake H, Gleave M, Kamidono S, Hara I. Overexpression of clusterin in transitional cell carcinoma of the bladder is related to disease progression and recurrence. Urology 2002; 59 (1): 150-4
    • (2002) Urology , vol.59 , Issue.1 , pp. 150-154
    • Miyake, H.1    Gleave, M.2    Kamidono, S.3    Hara, I.4
  • 52
    • 33745222255 scopus 로고    scopus 로고
    • Novel blood biomarkers of human urinary bladder cancer
    • Osman I, Bajorin DF, Sun TT, et al. Novel blood biomarkers of human urinary bladder cancer. Clin Can Res 2006; 12 (11 Pt 1): 3374-80
    • (2006) Clin Can Res , vol.12 , Issue.11 , pp. 3374-3380
    • Osman, I.1    Bajorin, D.F.2    Sun, T.T.3
  • 53
    • 65449129590 scopus 로고    scopus 로고
    • Urinary calreticulin in the diagnosis of bladder urothelial carcinoma
    • Kageyama S, Isono T, Matsuda S, et al. Urinary calreticulin in the diagnosis of bladder urothelial carcinoma. Inter J Urol 2009; 16 (5): 481-6
    • (2009) Inter J Urol , vol.16 , Issue.5 , pp. 481-486
    • Kageyama, S.1    Isono, T.2    Matsuda, S.3
  • 54
    • 84870936601 scopus 로고    scopus 로고
    • Comparative and targeted proteomic analyses of urinary microparticles from bladder cancer and hernia patients
    • Chen CL, Lai YF, Tang P, et al. Comparative and targeted proteomic analyses of urinary microparticles from bladder cancer and hernia patients. J Proteome Res 2012; 11 (12): 5611-29
    • (2012) J Proteome Res , vol.11 , Issue.12 , pp. 5611-5629
    • Chen, C.L.1    Lai, Y.F.2    Tang, P.3
  • 55
    • 84947208132 scopus 로고    scopus 로고
    • Identification and Validation of Potential New Biomarkers for Prostate Cancer Diagnosis and Prognosis Using 2D-DIGE and MS
    • Geisler C, Gaisa NT, Pfister D, et al. Identification and Validation of Potential New Biomarkers for Prostate Cancer Diagnosis and Prognosis Using 2D-DIGE and MS. BioMed Res Inter 2015; 2015: 454256
    • (2015) BioMed Res Inter , vol.2015 , pp. 454256
    • Geisler, C.1    Gaisa, N.T.2    Pfister, D.3
  • 56
    • 84871983882 scopus 로고    scopus 로고
    • A unique galectin signature in human prostate cancer progression suggests galectin-1 as a key target for treatment of advanced disease
    • Laderach DJ, Gentilini LD, Giribaldi L, et al. A unique galectin signature in human prostate cancer progression suggests galectin-1 as a key target for treatment of advanced disease. Cancer Res 2013; 73 (1): 86-96
    • (2013) Cancer Res , vol.73 , Issue.1 , pp. 86-96
    • Laderach, D.J.1    Gentilini, L.D.2    Giribaldi, L.3
  • 57
    • 84879436659 scopus 로고    scopus 로고
    • Molecular diagnosis of prostate cancer: Are we up to age?
    • Bhavsar T, Mccue P, Birbe R. Molecular diagnosis of prostate cancer: are we up to age? Semin Oncol 2013; 40 (3): 259-75
    • (2013) Semin Oncol , vol.40 , Issue.3 , pp. 259-275
    • Bhavsar, T.1    Mccue, P.2    Birbe, R.3
  • 58
    • 84893829147 scopus 로고    scopus 로고
    • A highly sensitive targeted mass spectrometric assay for quantification of AGR2 protein in human urine and serum
    • Shi T, Gao Y, Quek SI, et al. A highly sensitive targeted mass spectrometric assay for quantification of AGR2 protein in human urine and serum. J Proteome Res 2014; 13 (2): 875-82
    • (2014) J Proteome Res , vol.13 , Issue.2 , pp. 875-882
    • Shi, T.1    Gao, Y.2    Quek, S.I.3
  • 59
    • 84866538934 scopus 로고    scopus 로고
    • Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum
    • Shi T, Fillmore TL, Sun X, et al. Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum. Proc Nat Acad Sci USA 2012; 109 (38): 15395-400
    • (2012) Proc Nat Acad Sci USA , vol.109 , Issue.38 , pp. 15395-15400
    • Shi, T.1    Fillmore, T.L.2    Sun, X.3
  • 60
    • 67649444693 scopus 로고    scopus 로고
    • Prostate Cancer Specificity of PCA3 Gene Testing: Examples from Clinical Practice
    • Marks LS, Bostwick DG. Prostate Cancer Specificity of PCA3 Gene Testing: Examples from Clinical Practice. Rev Urol 2008; 10 (3): 175-81
    • (2008) Rev Urol , vol.10 , Issue.3 , pp. 175-181
    • Marks, L.S.1    Bostwick, D.G.2
  • 62
    • 77957557995 scopus 로고    scopus 로고
    • Comparison of three methods for isolation of urinary microvesicles to identify biomarkers of nephrotic syndrome
    • Rood IM, Deegens JK, Merchant ML, et al. Comparison of three methods for isolation of urinary microvesicles to identify biomarkers of nephrotic syndrome. Kidney Int 2010; 78 (8): 810-16
    • (2010) Kidney Int , vol.78 , Issue.8 , pp. 810-816
    • Rood, I.M.1    Deegens, J.K.2    Merchant, M.L.3
  • 63
    • 84888098593 scopus 로고    scopus 로고
    • Diabetic nephropathy induces changes in the proteome of human urinary exosomes as revealed by label-free comparative analysis
    • Zubiri I, Posada-Ayala M, Sanz-Maroto A, et al. Diabetic nephropathy induces changes in the proteome of human urinary exosomes as revealed by label-free comparative analysis. J Proteomics 2014; 96: 92-102
    • (2014) J Proteomics , vol.96 , pp. 92-102
    • Zubiri, I.1    Posada-Ayala, M.2    Sanz-Maroto, A.3
  • 64
    • 4444370685 scopus 로고    scopus 로고
    • Acute-phase proteins and microalbuminuria among patients with type 2 diabetes
    • Gomes MB, Nogueira VG. Acute-phase proteins and microalbuminuria among patients with type 2 diabetes. Diabetes Res Clin Pract 2004; 66 (1): 31-9
    • (2004) Diabetes Res Clin Pract , vol.66 , Issue.1 , pp. 31-39
    • Gomes, M.B.1    Nogueira, V.G.2
  • 65
    • 84859725410 scopus 로고    scopus 로고
    • Differential proteome profiling using iTRAQ in microalbuminuric and normoalbuminuric type 2 diabetic patients
    • Jin J, Ku YH, Kim Y, et al. Differential proteome profiling using iTRAQ in microalbuminuric and normoalbuminuric type 2 diabetic patients. Exp Diabetes Res 2012; 2012: 168602
    • (2012) Exp Diabetes Res , vol.2012 , pp. 168602
    • Jin, J.1    Ku, Y.H.2    Kim, Y.3
  • 66
    • 76149129381 scopus 로고    scopus 로고
    • Verification of biomarkers for diabetic retinopathy by multiple reaction monitoring
    • Kim K, Kim SJ, Yu HG, et al. Verification of biomarkers for diabetic retinopathy by multiple reaction monitoring. J Proteome Res 2010; 9 (2): 689-99
    • (2010) J Proteome Res , vol.9 , Issue.2 , pp. 689-699
    • Kim, K.1    Kim, S.J.2    Yu, H.G.3
  • 67
    • 84877113572 scopus 로고    scopus 로고
    • The identification of new biomarkers for identifying and monitoring kidney disease and their translation into a rapid mass spectrometry-based test: Evidence of presymptomatic kidney disease in pediatric Fabry and type-I diabetic patients
    • Manwaring V, Heywood WE, Clayton R, et al. The identification of new biomarkers for identifying and monitoring kidney disease and their translation into a rapid mass spectrometry-based test: evidence of presymptomatic kidney disease in pediatric Fabry and type-I diabetic patients. J Proteome Res 2013; 12 (5): 2013-21
    • (2013) J Proteome Res , vol.12 , Issue.5 , pp. 2013-2021
    • Manwaring, V.1    Heywood, W.E.2    Clayton, R.3
  • 68
    • 77955620601 scopus 로고    scopus 로고
    • Urine albumin-to-creatinine ratio: Whats in a number?
    • Kestenbaum B, De Boer IH. Urine albumin-to-creatinine ratio: whats in a number? JASN 2010; 21 (8): 1243-4
    • (2010) JASN , vol.21 , Issue.8 , pp. 1243-1244
    • Kestenbaum, B.1    De Boer, I.H.2
  • 70
    • 82055189935 scopus 로고    scopus 로고
    • Laboratory measurement of urine albumin and urine total protein in screening for proteinuria in chronic kidney disease
    • Martin H. Laboratory measurement of urine albumin and urine total protein in screening for proteinuria in chronic kidney disease. Clin Biochemist 2011; 32 (2): 97-102
    • (2011) Clin Biochemist , vol.32 , Issue.2 , pp. 97-102
    • Martin, H.1
  • 71
    • 58149239885 scopus 로고    scopus 로고
    • Current issues in measurement and reporting of urinary albumin excretion
    • Miller WG, Bruns DE, Hortin GL, et al. Current issues in measurement and reporting of urinary albumin excretion. Clin Chem 2009; 55 (1): 24-38
    • (2009) Clin Chem , vol.55 , Issue.1 , pp. 24-38
    • Miller, W.G.1    Bruns, D.E.2    Hortin, G.L.3
  • 72
    • 79955809067 scopus 로고    scopus 로고
    • Methods for peptide and protein quantitation by liquid chromatography-multiple reaction monitoring mass spectrometry
    • Zhang H, Liu Q, Zimmerman LJ, et al. Methods for peptide and protein quantitation by liquid chromatography-multiple reaction monitoring mass spectrometry. Molecular & cellular proteomics: MCP 2011; 10 (6): M110 006593
    • (2011) Molecular & Cellular Proteomics: MCP , vol.10 , Issue.6 , pp. M110006593
    • Zhang, H.1    Liu, Q.2    Zimmerman, L.J.3
  • 73
    • 42649091860 scopus 로고    scopus 로고
    • Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics
    • Mirzaei H, Mcbee JK, Watts J, Aebersold R. Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics. Molecular & cellular proteomics: MCP 2008; 7 (4): 813-23
    • (2008) Molecular & Cellular Proteomics: MCP , vol.7 , Issue.4 , pp. 813-823
    • Mirzaei, H.1    Mcbee, J.K.2    Watts, J.3    Aebersold, R.4
  • 74
    • 84861426386 scopus 로고    scopus 로고
    • The current status of clinical proteomics and the use of MRM and MRM(3) for biomarker validation
    • Lemoine J, Fortin T, Salvador A, et al. The current status of clinical proteomics and the use of MRM and MRM(3) for biomarker validation. Expert Rev Mol Diagn 2012; 12 (4): 333-42
    • (2012) Expert Rev Mol Diagn , vol.12 , Issue.4 , pp. 333-342
    • Lemoine, J.1    Fortin, T.2    Salvador, A.3
  • 75
    • 84879886283 scopus 로고    scopus 로고
    • Optimization of liquid chromatography-multiple reaction monitoring cubed mass spectrometry assay for protein quantification: Application to aquaporin-2 water channel in human urine
    • Jaffuel A, Lemoine J, Aubert C, et al. Optimization of liquid chromatography-multiple reaction monitoring cubed mass spectrometry assay for protein quantification: application to aquaporin-2 water channel in human urine. J Chromatog 2013; 1301: 122-30
    • (2013) J Chromatog , vol.1301 , pp. 122-130
    • Jaffuel, A.1    Lemoine, J.2    Aubert, C.3
  • 76
    • 84894109697 scopus 로고    scopus 로고
    • Absolute quantification of podocin, a potential biomarker of glomerular injury in human urine, by liquid chromatography-multiple reaction monitoring cubed mass spectrometry
    • Simon R, Lemoine J, Fonbonne C, et al. Absolute quantification of podocin, a potential biomarker of glomerular injury in human urine, by liquid chromatography-multiple reaction monitoring cubed mass spectrometry. J Pharm Biomed Anal 2014; 94: 84-91
    • (2014) J Pharm Biomed Anal , vol.94 , pp. 84-91
    • Simon, R.1    Lemoine, J.2    Fonbonne, C.3
  • 77
    • 84870909465 scopus 로고    scopus 로고
    • Urinary proteome analysis of irritable bowel syndrome (IBS) symptom subgroups
    • Goo YA, Cain K, Jarrett M, et al. Urinary proteome analysis of irritable bowel syndrome (IBS) symptom subgroups. J Proteome Res 2012; 11 (12): 5650-62
    • (2012) J Proteome Res , vol.11 , Issue.12 , pp. 5650-5662
    • Goo, Y.A.1    Cain, K.2    Jarrett, M.3
  • 78
    • 68049114653 scopus 로고    scopus 로고
    • Precursor acquisition independent from ion count: How to dive deeper into the proteomics ocean
    • Panchaud A, Scherl A, Shaffer SA, et al. Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean. Anal Chem 2009; 81 (15): 6481-8
    • (2009) Anal Chem , vol.81 , Issue.15 , pp. 6481-6488
    • Panchaud, A.1    Scherl, A.2    Shaffer, S.A.3
  • 79
    • 84898599851 scopus 로고    scopus 로고
    • Inconvenient truth: Cancer biomarker development by using proteomics
    • Kondo T. Inconvenient truth: cancer biomarker development by using proteomics. Biochim Biophys Acta 2014; 1844 (5): 861-5
    • (2014) Biochim Biophys Acta , vol.1844 , Issue.5 , pp. 861-865
    • Kondo, T.1
  • 80
    • 84886447263 scopus 로고    scopus 로고
    • A blood-based proteomic classifier for the molecular characterization of pulmonary nodules
    • Li XJ, Hayward C, Fong PY, et al. A blood-based proteomic classifier for the molecular characterization of pulmonary nodules. Sci Transl Med 2013; 5 (207): 207ra142
    • (2013) Sci Transl Med , vol.5 , Issue.207 , pp. 207ra142
    • Li, X.J.1    Hayward, C.2    Fong, P.Y.3
  • 81
    • 75749095246 scopus 로고    scopus 로고
    • The bottleneck in the cancer biomarker pipeline and protein quantification through mass spectrometry-based approaches: Current strategies for candidate verification
    • Makawita S, Diamandis EP. The bottleneck in the cancer biomarker pipeline and protein quantification through mass spectrometry-based approaches: current strategies for candidate verification. Clin Chem 2010; 56 (2): 212-22
    • (2010) Clin Chem , vol.56 , Issue.2 , pp. 212-222
    • Makawita, S.1    Diamandis, E.P.2
  • 82
    • 84911991922 scopus 로고    scopus 로고
    • Development of quantitative method for determination of gamma-glutamyl peptides by capillary electrophoresis tandem mass spectrometry: An efficient approach avoiding matrix effect
    • Hirayama A, Igarashi K, Tomita M, Soga T. Development of quantitative method for determination of gamma-glutamyl peptides by capillary electrophoresis tandem mass spectrometry: an efficient approach avoiding matrix effect. J chromatog 2014; 1369: 161-9
    • (2014) J Chromatog , vol.1369 , pp. 161-169
    • Hirayama, A.1    Igarashi, K.2    Tomita, M.3    Soga, T.4
  • 83
    • 84877678295 scopus 로고    scopus 로고
    • Capillary zone electrophoresis-multiple reaction monitoring from 100 pg of RAW 264.7 cell lysate digest
    • Sun L, Li Y, Champion MM, et al. Capillary zone electrophoresis-multiple reaction monitoring from 100 pg of RAW 264.7 cell lysate digest. The Analyst 2013; 138 (11): 3181-8
    • (2013) The Analyst , vol.138 , Issue.11 , pp. 3181-3188
    • Sun, L.1    Li, Y.2    Champion, M.M.3
  • 84
    • 84878666313 scopus 로고    scopus 로고
    • Recent advances in capillary electrophoresis coupled to mass spectrometry for clinical proteomic applications
    • Stalmach A, Albalat A, Mullen W, Mischak H. Recent advances in capillary electrophoresis coupled to mass spectrometry for clinical proteomic applications. Electrophoresis 2013; 34 (11): 1452-64
    • (2013) Electrophoresis , vol.34 , Issue.11 , pp. 1452-1464
    • Stalmach, A.1    Albalat, A.2    Mullen, W.3    Mischak, H.4
  • 85
    • 84928008315 scopus 로고    scopus 로고
    • CE-MS-based proteomics in biomarker discovery and clinical application. Proteomics
    • Pontillo C, Filip S, Borras DM, et al. CE-MS-based proteomics in biomarker discovery and clinical application. Proteomics. Clin Application 2015
    • (2015) Clin Application
    • Pontillo, C.1    Filip, S.2    Borras, D.M.3
  • 86
    • 84879598151 scopus 로고    scopus 로고
    • Constrained selected reaction monitoring: Quantification of selected post-translational modifications and protein isoforms
    • Liu X, Jin Z, Obrien R, et al. Constrained selected reaction monitoring: quantification of selected post-translational modifications and protein isoforms. Methods 2013; 61 (3): 304-12
    • (2013) Methods , vol.61 , Issue.3 , pp. 304-312
    • Liu, X.1    Jin, Z.2    Obrien, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.