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Volumn 3, Issue 9, 2009, Pages 1052-1061

Urine proteomics for profiling of human disease using high accuracy mass spectrometry

Author keywords

Bioinformatics; Biomarker; Proteome profilling

Indexed keywords

ALPHA2 GLYCOPROTEIN; CALGRANULIN A; OROSOMUCOID; PROTEOME;

EID: 70350746686     PISSN: 18628346     EISSN: None     Source Type: Journal    
DOI: 10.1002/prca.200900008     Document Type: Article
Times cited : (108)

References (43)
  • 1
    • 0001644020 scopus 로고    scopus 로고
    • The human plasma proteome: History, character, and diagnostic prospects
    • Anderson, N. L., Anderson, N. G., The human plasma proteome: history, character, and diagnostic prospects. Mol. Cell. Proteomics 2002, 1, 845-867.
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 845-867
    • Anderson, N.L.1    Anderson, N.G.2
  • 2
    • 0003206867 scopus 로고    scopus 로고
    • Toward a human blood serum proteome: Analysis by multidimensional separation coupled with mass spectrometry
    • Adkins, J. N., Varnum, S. M., Auberry, K. J., Moore, R. J. et al., Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry. Mol. Cell. Proteomics 2002, 1, 947-955.
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 947-955
    • Adkins, J.N.1    Varnum, S.M.2    Auberry, K.J.3    Moore, R.J.4
  • 3
    • 35348863892 scopus 로고    scopus 로고
    • High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites
    • Stahl-Zeng, J., Lange, V., Ossola, R., Eckhardt, K. et al., High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites. Mol. Cell. Proteomics 2007, 6, 1809-1817.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1809-1817
    • Stahl-Zeng, J.1    Lange, V.2    Ossola, R.3    Eckhardt, K.4
  • 4
    • 38349068918 scopus 로고    scopus 로고
    • Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution
    • Keshishian, H., Addona, T., Burgess, M., Kuhn, E., Carr, S. A., Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution. Mol. Cell. Proteomics 2007, 6, 2212-2229.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 2212-2229
    • Keshishian, H.1    Addona, T.2    Burgess, M.3    Kuhn, E.4    Carr, S.A.5
  • 5
    • 33746340251 scopus 로고    scopus 로고
    • Urinary proteome of steroid-sensitive and steroid-resistant idiopathic nephrotic syndrome of childhood
    • Woroniecki, R. P., Orlova, T. N., Mendelev, N., Shatat, I. F. et al., Urinary proteome of steroid-sensitive and steroid-resistant idiopathic nephrotic syndrome of childhood. Am. J. Nephrol. 2006, 26, 258-267.
    • (2006) Am. J. Nephrol , vol.26 , pp. 258-267
    • Woroniecki, R.P.1    Orlova, T.N.2    Mendelev, N.3    Shatat, I.F.4
  • 6
    • 33646025496 scopus 로고    scopus 로고
    • Urinary beta2-microglobulin is associated with acute renal allograft rejection
    • Oetting, W. S., Rogers, T. B., Krick, T. P., Matas, A. J., Ibrahim, H. N., Urinary beta2-microglobulin is associated with acute renal allograft rejection. Am. J. Kidney. Dis. 2006, 47, 898-904.
    • (2006) Am. J. Kidney. Dis , vol.47 , pp. 898-904
    • Oetting, W.S.1    Rogers, T.B.2    Krick, T.P.3    Matas, A.J.4    Ibrahim, H.N.5
  • 7
    • 33750825732 scopus 로고    scopus 로고
    • Urinary S100B concentrations are increased after brain injury in children: A preliminary study
    • Berger, R. P., Kochanek, P. M., Urinary S100B concentrations are increased after brain injury in children: a preliminary study. Pediatr. Crit. Care Med. 2006, 7, 557-561.
    • (2006) Pediatr. Crit. Care Med , vol.7 , pp. 557-561
    • Berger, R.P.1    Kochanek, P.M.2
  • 8
    • 0029585508 scopus 로고
    • Interleukin-1 receptor antagonist in differential diagnosis of inflammatory bowel diseases
    • Propst, A., Propst, T., Herold, M., Vogel, W., Judmaier, G., Interleukin-1 receptor antagonist in differential diagnosis of inflammatory bowel diseases. Eur. J. Gastroenterol. Hepatol. 1995, 7:1031-1036.
    • (1995) Eur. J. Gastroenterol. Hepatol , vol.7 , pp. 1031-1036
    • Propst, A.1    Propst, T.2    Herold, M.3    Vogel, W.4    Judmaier, G.5
  • 9
    • 0015276005 scopus 로고
    • Composition and variation of the gel electrophoretic fractions of plasma, cerebrosinal fluid and urine
    • Laurell, C. B., Composition and variation of the gel electrophoretic fractions of plasma, cerebrosinal fluid and urine. Scand. J. Clin. Lab. Invest. Suppl. 1972, 124, 71-82.
    • (1972) Scand. J. Clin. Lab. Invest. Suppl , vol.124 , pp. 71-82
    • Laurell, C.B.1
  • 10
    • 4444226979 scopus 로고    scopus 로고
    • Identification and proteomic profiling of exosomes in human urine
    • Pisitkun, T., Shen, R. F., Knepper, M. A., Identification and proteomic profiling of exosomes in human urine. Proc. Natl. Acad. Sci. USA 2004, 101, 13368-13373.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 13368-13373
    • Pisitkun, T.1    Shen, R.F.2    Knepper, M.A.3
  • 12
    • 29544433936 scopus 로고    scopus 로고
    • Human urine proteome analysis by three separation approaches
    • Sun, W., Li, F., Wu, S., Wang, X. et al., Human urine proteome analysis by three separation approaches. Proteomics 2005, 5, 4994-5001.
    • (2005) Proteomics , vol.5 , pp. 4994-5001
    • Sun, W.1    Li, F.2    Wu, S.3    Wang, X.4
  • 14
    • 33750364830 scopus 로고    scopus 로고
    • The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins
    • Adachi, J., Kumar, C., Zhang, Y., Olsen, J. V., Mann, M., The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins. Genome Biol. 2006, 7, R80.
    • (2006) Genome Biol , vol.7
    • Adachi, J.1    Kumar, C.2    Zhang, Y.3    Olsen, J.V.4    Mann, M.5
  • 15
    • 69849106821 scopus 로고    scopus 로고
    • Capillary electrophoresis-mass spectrometry as a powerful tool in biomarker discovery and clinical diagnosis: An update of recent developments
    • in press
    • Mischak, H., Coon, J. J., Novak, J., Weissinger, E. M. et al., Capillary electrophoresis-mass spectrometry as a powerful tool in biomarker discovery and clinical diagnosis: an update of recent developments. Mass Spectrom. Rev. 2008, in press
    • (2008) Mass Spectrom. Rev
    • Mischak, H.1    Coon, J.J.2    Novak, J.3    Weissinger, E.M.4
  • 16
    • 50849092540 scopus 로고    scopus 로고
    • CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics
    • Coon, J. J., Zurbig, P., Dakna, M., Dominiczak, A. et al., CE-MS analysis of the human urinary proteome for biomarker discovery and disease diagnostics. Proteomics Clin. Appl. 2008, 2, 964-973.
    • (2008) Proteomics Clin. Appl , vol.2 , pp. 964-973
    • Coon, J.J.1    Zurbig, P.2    Dakna, M.3    Dominiczak, A.4
  • 18
    • 70350757462 scopus 로고    scopus 로고
    • Discovery and validation of urine markers of acute pediatric appendicitis using high accuracy mass spectrometry
    • in press
    • Kentsis, A., Lin, Y. Y., Kurek, K., Colicchio, M. et al., Discovery and validation of urine markers of acute pediatric appendicitis using high accuracy mass spectrometry. Ann. Emerg. Med. 2009, in press.
    • (2009) Ann. Emerg. Med
    • Kentsis, A.1    Lin, Y.Y.2    Kurek, K.3    Colicchio, M.4
  • 19
    • 33645079130 scopus 로고    scopus 로고
    • SELDI-TOF MS of quadruplicate urine and serum samples to evaluate changes related to storage conditions
    • Traum, A. Z., Wells, M. P., Aivado, M., Libermann, T. A. et al., SELDI-TOF MS of quadruplicate urine and serum samples to evaluate changes related to storage conditions. Proteomics 2006, 6, 1676-1680.
    • (2006) Proteomics , vol.6 , pp. 1676-1680
    • Traum, A.Z.1    Wells, M.P.2    Aivado, M.3    Libermann, T.A.4
  • 20
    • 33646161950 scopus 로고    scopus 로고
    • Collection, storage, preservation, and normalization of human urinary exosomes for biomarker discovery
    • Zhou, H., Yuen, P. S., Pisitkun, T., Gonzales, P. A. et al., Collection, storage, preservation, and normalization of human urinary exosomes for biomarker discovery. Kidney Int. 2006, 69, 1471-1476.
    • (2006) Kidney Int , vol.69 , pp. 1471-1476
    • Zhou, H.1    Yuen, P.S.2    Pisitkun, T.3    Gonzales, P.A.4
  • 21
    • 55249088324 scopus 로고    scopus 로고
    • Optimizing sample handling for urinary proteomics
    • Lee, R. S., Monigatti, F., Briscoe, A. C., Waldon, Z. et al., Optimizing sample handling for urinary proteomics. J. Proteome Res. 2008, 7, 4022-4030.
    • (2008) J. Proteome Res , vol.7 , pp. 4022-4030
    • Lee, R.S.1    Monigatti, F.2    Briscoe, A.C.3    Waldon, Z.4
  • 22
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    • Elias, J. E., Gygi, S. P., Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 2007, 4, 207-214.
    • (2007) Nat. Methods , vol.4 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 25
    • 42149172286 scopus 로고    scopus 로고
    • Objective and automated protocols for the evaluation of biomedical search engines using No Title Evaluation protocols
    • Campagne, F., Objective and automated protocols for the evaluation of biomedical search engines using No Title Evaluation protocols. BMC Bioinformatics 2008, 9, 132.
    • (2008) BMC Bioinformatics , vol.9 , pp. 132
    • Campagne, F.1
  • 26
    • 0030838112 scopus 로고    scopus 로고
    • Recombinant advanced glycation end product receptor pharmacokinetics in normal and diabetic rats
    • Renard, C., Chappey, O., Wautier, M. P., Nagashima, M. et al., Recombinant advanced glycation end product receptor pharmacokinetics in normal and diabetic rats. Mol. Pharmacol. 1997, 52, 54-62.
    • (1997) Mol. Pharmacol , vol.52 , pp. 54-62
    • Renard, C.1    Chappey, O.2    Wautier, M.P.3    Nagashima, M.4
  • 27
    • 2442690211 scopus 로고    scopus 로고
    • Degradation of albumin by the renal proximal tubule cells and the subsequent fate of its fragments
    • Gudehithlu, K. P., Pegoraro, A. A., Dunea, G., Arruda, J. A., Singh, A. K., Degradation of albumin by the renal proximal tubule cells and the subsequent fate of its fragments. Kidney Int. 2004, 65, 2113-2122.
    • (2004) Kidney Int , vol.65 , pp. 2113-2122
    • Gudehithlu, K.P.1    Pegoraro, A.A.2    Dunea, G.3    Arruda, J.A.4    Singh, A.K.5
  • 28
    • 31544467615 scopus 로고    scopus 로고
    • Effect of obesity on inflammatory markers and renal functions
    • Cindik, N., Baskin, E., Agras, P. I., Kinik, S. T. et al., Effect of obesity on inflammatory markers and renal functions. Acta Paediatr. 2005, 94, 1732-1737.
    • (2005) Acta Paediatr , vol.94 , pp. 1732-1737
    • Cindik, N.1    Baskin, E.2    Agras, P.I.3    Kinik, S.T.4
  • 29
    • 0036339238 scopus 로고    scopus 로고
    • The measurement of insulin-like growth factor-I (IGF-I) concentration in random urine samples
    • De Palo, E. F., Gatti, R., Lancerin, F., Cappellin, E. et al., The measurement of insulin-like growth factor-I (IGF-I) concentration in random urine samples. Clin. Chem. Lab. Med. 2002, 40, 574-578.
    • (2002) Clin. Chem. Lab. Med , vol.40 , pp. 574-578
    • De Palo, E.F.1    Gatti, R.2    Lancerin, F.3    Cappellin, E.4
  • 30
    • 0027452030 scopus 로고
    • Variability in the urinary excretion of growth hormone in children: A comparison with other urinary proteins
    • Skinner, A. M., Clayton, P. E., Price, D. A., Addison, G. M., Mui, C. Y., Variability in the urinary excretion of growth hormone in children: a comparison with other urinary proteins. J. Endocrinol. 1993, 138, 337-343.
    • (1993) J. Endocrinol , vol.138 , pp. 337-343
    • Skinner, A.M.1    Clayton, P.E.2    Price, D.A.3    Addison, G.M.4    Mui, C.Y.5
  • 31
    • 10844258104 scopus 로고    scopus 로고
    • Hepcidin regulates cellular iron efflux by binding to ferroportin and inducing its internalization
    • Nemeth, E., Tuttle, M. S., Powelson, J., Vaughn, M. B. et al., Hepcidin regulates cellular iron efflux by binding to ferroportin and inducing its internalization. Science 2004, 306, 2090-2093.
    • (2004) Science , vol.306 , pp. 2090-2093
    • Nemeth, E.1    Tuttle, M.S.2    Powelson, J.3    Vaughn, M.B.4
  • 32
    • 38549120838 scopus 로고    scopus 로고
    • The endocrine role for chromogranin A: A prohormone for peptides with regulatory properties
    • Helle, K. B., Corti, A., Metz-Boutigue, M. H., Tota, B., The endocrine role for chromogranin A: a prohormone for peptides with regulatory properties. Cell. Mol. Life Sci. 2007, 64, 2863-2886.
    • (2007) Cell. Mol. Life Sci , vol.64 , pp. 2863-2886
    • Helle, K.B.1    Corti, A.2    Metz-Boutigue, M.H.3    Tota, B.4
  • 33
    • 0036838611 scopus 로고    scopus 로고
    • Ly-6 superfamily members Ly-6A/E, Ly-6C, and Ly-6I recognize two potential ligands expressed by B lymphocytes
    • Pflugh, D. L., Maher, S. E., Bothwell, A. L., Ly-6 superfamily members Ly-6A/E, Ly-6C, and Ly-6I recognize two potential ligands expressed by B lymphocytes. J. Immunol. 2002, 169, 5130-536.
    • (2002) J. Immunol , vol.169 , pp. 5130-5536
    • Pflugh, D.L.1    Maher, S.E.2    Bothwell, A.L.3
  • 35
    • 38149050613 scopus 로고    scopus 로고
    • The role of angiopoietin-like proteins in angiogenesis and metabolism
    • Hato, T., Tabata, M., Oike, Y., The role of angiopoietin-like proteins in angiogenesis and metabolism. Trends Cardiovasc. Med. 2008, 18, 6-14.
    • (2008) Trends Cardiovasc. Med , vol.18 , pp. 6-14
    • Hato, T.1    Tabata, M.2    Oike, Y.3
  • 36
    • 47949130351 scopus 로고    scopus 로고
    • Identifying differences in protein expression levels by spectral counting and feature selection
    • Carvalho, P. C., Hewel, J., Barbosa, V. C., Yates, J. R., III,, Identifying differences in protein expression levels by spectral counting and feature selection. Genet. Mol. Res. 2008, 7, 342-356.
    • (2008) Genet. Mol. Res , vol.7 , pp. 342-356
    • Carvalho, P.C.1    Hewel, J.2    Barbosa, V.C.3    Yates III, J.R.4
  • 37
    • 34547891114 scopus 로고    scopus 로고
    • Claudins and paracellular transport: An update
    • Angelow, S., Yu, A. S., Claudins and paracellular transport: an update. Curr. Opin. Nephrol. Hypertens. 2007, 16, 459-464.
    • (2007) Curr. Opin. Nephrol. Hypertens , vol.16 , pp. 459-464
    • Angelow, S.1    Yu, A.S.2
  • 38
    • 34548727320 scopus 로고    scopus 로고
    • Zhang, Y., Wada, J., Collectrin, a homologue of ACE2, its transcriptional control and functional perspectives. Biochem. Biophys. Res. Commun. 2007, 363, 1-5.
    • Zhang, Y., Wada, J., Collectrin, a homologue of ACE2, its transcriptional control and functional perspectives. Biochem. Biophys. Res. Commun. 2007, 363, 1-5.
  • 39
    • 0034997336 scopus 로고    scopus 로고
    • Wright, E. M., Renal Na(+)-glucose cotransporters. Am. J. Physiol. Renal Physiol. 2001, 280, F10-F18.
    • Wright, E. M., Renal Na(+)-glucose cotransporters. Am. J. Physiol. Renal Physiol. 2001, 280, F10-F18.
  • 40
    • 0033662117 scopus 로고    scopus 로고
    • Reference distributions for the positive acute phase serum proteins, alpha1-acid glycoprotein (orosomucoid), alpha1-antitrypsin, and haptoglobin: A practical, simple, and clinically relevant approach in a large cohort
    • Ritchie, R. F., Palomaki, G. E., Neveux, L. M., Navolotskaia, O. et al., Reference distributions for the positive acute phase serum proteins, alpha1-acid glycoprotein (orosomucoid), alpha1-antitrypsin, and haptoglobin: a practical, simple, and clinically relevant approach in a large cohort. J. Clin. Lab. Anal. 2000, 14, 284-292.
    • (2000) J. Clin. Lab. Anal , vol.14 , pp. 284-292
    • Ritchie, R.F.1    Palomaki, G.E.2    Neveux, L.M.3    Navolotskaia, O.4
  • 41
    • 38049062199 scopus 로고    scopus 로고
    • Platelet-activating factor, PAF acetylhydrolase, and severe anaphylaxis
    • Vadas, P., Gold, M., Perelman, B., Liss, G. M. et al., Platelet-activating factor, PAF acetylhydrolase, and severe anaphylaxis. N. Engl. J. Med. 2008, 358, 28-35.
    • (2008) N. Engl. J. Med , vol.358 , pp. 28-35
    • Vadas, P.1    Gold, M.2    Perelman, B.3    Liss, G.M.4
  • 43
    • 35248814255 scopus 로고    scopus 로고
    • The pathogenesis and treatment of acid sphingomyelinase-deficient Niemann-Pick disease
    • Schuchman, E. H., The pathogenesis and treatment of acid sphingomyelinase-deficient Niemann-Pick disease. J. Inherit. Metab. Dis. 2007, 30, 654-663.
    • (2007) J. Inherit. Metab. Dis , vol.30 , pp. 654-663
    • Schuchman, E.H.1


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